LOCUS       NZ_CP095251             5787 bp    DNA     circular CON 05-JUN-2024
DEFINITION  Klebsiella pneumoniae strain 21080534 plasmid p21080534_4, complete
            sequence.
ACCESSION   NZ_CP095251
VERSION     NZ_CP095251.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27363255
            Assembly: GCF_022982595.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5787)
  AUTHORS   He,Z.
  TITLE     Comparative Genomic Analyses of Klebsiella pneumoniae in Anhui,
            China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5787)
  AUTHORS   He,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2022) School of life science, University of
            Science and Technology of China, 1129 Huizhou Ave, Hefei, Anhui
            23005, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Unicycler v. 0.4.9b; SPAdes v. 3.13.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022982595.1-RS_2024_06_05
            Annotation Date                   :: 06/05/2024 03:17:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,799
            CDSs (total)                      :: 5,677
            Genes (coding)                    :: 5,504
            CDSs (with protein)               :: 5,504
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 173
            CDSs (without protein)            :: 173
            Pseudo Genes (ambiguous residues) :: 0 of 173
            Pseudo Genes (frameshifted)       :: 66 of 173
            Pseudo Genes (incomplete)         :: 113 of 173
            Pseudo Genes (internal stop)      :: 20 of 173
            Pseudo Genes (multiple problems)  :: 25 of 173
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095251.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5787
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="21080534"
                     /isolation_source="Diversion fluid"
                     /host="Homo"
                     /db_xref="taxon:573"
                     /plasmid="p21080534_4"
                     /geo_loc_name="China: Anhui"
                     /lat_lon="31.85777 N 117.291451 E"
                     /collection_date="2021-08"
                     /collected_by="Zhien He"
     gene            join(5653..5787,1..846)
                     /locus_tag="MU311_RS28800"
                     /old_locus_tag="MU311_28800"
     CDS             join(5653..5787,1..846)
                     /locus_tag="MU311_RS28800"
                     /old_locus_tag="MU311_28800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000019445.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS5-like element ISKpn26 family transposase"
                     /protein_id="WP_000019473.1"
                     /translation="MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMVEVIEPFY
                     PKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTT
                     IMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPE
                     MHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAG
                     YQGAPQREELAEVDVDWLIAERPGKVKTLKQHPRKNKTAINIEYMKASIRARVEHPFRI
                     IKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ"
                     /name="IS5-like element ISKpn26 family transposase"
     gene            828..1046
                     /locus_tag="MU311_RS29055"
     CDS             828..1046
                     /locus_tag="MU311_RS29055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001340454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_343262928.1"
                     /translation="MGEISVKTGNNARNGGKNSLNRLIRCVCGKKIGPDPRNFNQRVSL
                     GRNDLLIRTFPKRIVFCESIYLIRILK"
                     /name="hypothetical protein"
     gene            1315..1947
                     /gene="rmpA"
                     /locus_tag="MU311_RS28805"
                     /old_locus_tag="MU311_28805"
     ARG             1316..1944
                     /name="rmpA"
                     /gene="rmpA"
                     /gene_name="mucoid phenotype regulator RmpA"
                     /tool="amrfinderplus"
                     /drug_class="nan"
                     /identity="100.0"
                     /coverage="100.0"
     gene            2003..2125
                     /gene="rmpD"
                     /locus_tag="MU311_RS28810"
                     /old_locus_tag="MU311_28810"
     ARG             2004..2122
                     /name="rmpD"
                     /gene="rmpD"
                     /gene_name="mucoid phenotype synthesis protein RmpD"
                     /tool="amrfinderplus"
                     /drug_class="nan"
                     /identity="100.0"
                     /coverage="100.0"
     gene            2478..2879
                     /gene="rmpC"
                     /locus_tag="MU311_RS28815"
                     /old_locus_tag="MU311_28815"
     CDS             2478..2879
                     /gene="rmpC"
                     /locus_tag="MU311_RS28815"
                     /old_locus_tag="MU311_28815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_213034832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LuxR C-terminal-related transcriptional
                     regulator"
                     /protein_id="WP_214588034.1"
                     /translation="MNHKVSIKEYSYLKKIGLPVFFILNTNCNVNSTLIGINIINAREA
                     ITILKDRMISLFNGGGQLDYKPINLTKKESFILRLYIDGLSLTQISEKTAIRKKTLITH
                     TRNILNKTGVKHHNHLNILKNILGIHLAH"
                     /name="rmpC"
     gene            2952..3854
                     /gene="peg-344"
                     /locus_tag="MU311_RS28820"
                     /old_locus_tag="MU311_28820"
     ARG             2953..3851
                     /name="peg-344"
                     /gene="peg-344"
                     /gene_name="DMT family inner membrane transporter PEG344"
                     /tool="amrfinderplus"
                     /drug_class="nan"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(3997..4218)
                     /locus_tag="MU311_RS28825"
                     /old_locus_tag="MU311_28825"
     CDS             complement(3997..4218)
                     /locus_tag="MU311_RS28825"
                     /old_locus_tag="MU311_28825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004144043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004213615.1"
                     /translation="MDKKLFQYPEDDFFILLYNESLLEFNIQKANAFLIESCNCFLEGK
                     DNGFRPLAFSNSRDELLEIKKYLNRARG"
                     /name="hypothetical protein"
     gene            complement(4280..>5587)
                     /locus_tag="MU311_RS28830"
                     /old_locus_tag="MU311_28830"
                     /pseudo=""
     CDS             complement(4280..>5587)
                     /locus_tag="MU311_RS28830"
                     /old_locus_tag="MU311_28830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004902397.1"
                     /GO_function="GO:0015344 - siderophore uptake transmembrane
                     transporter activity [Evidence IEA]"
                     /GO_process="GO:0015891 - siderophore transport [Evidence
                     IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="FepA family TonB-dependent siderophore receptor"
                     /name="FepA family TonB-dependent siderophore receptor"
ORIGIN
        1 cccaaggcgg gcaatggccg acggccctat ccgctggaga ccatgctgcg tattcactgc
       61 atgcagcatt ggtacaacct gagcgacggt gccatggaag atgccctgta cgaaatcgcc
      121 tccatgcgcc tgtttgcccg attatccctg gatagcgccc tgccggatcg caccaccatc
      181 atgaatttcc gccacctgct cgagcagcat caactggccc gtcaattgtt caagaccatc
      241 aatcgctggc tggccgaagc aggcgtcatg atgacccaag gcactttggt ggatgccacc
      301 atcattgagg cacccagctc taccaagaac aaagagcagc aacgcgatcc ggagatgcat
      361 cagaccaaga aaggcaatca gtggcacttt ggcatgaagg cccacattgg tgtcgatgcc
      421 aagagtggcc tgacccacag cctagtcacc accgcggcca acgagcatga cctcaatcag
      481 ctgggtaatc tgcttcatgg agaggagcaa tttgtctcag ccgatgccgg ctaccaagga
      541 gcgccacagc gcgaggagct ggccgaggtg gatgtggact ggctgatcgc cgagcgtccc
      601 ggcaaggtaa aaaccttgaa gcagcatccg cgcaagaaca aaacggccat caacatcgaa
      661 tacatgaaag ccagcatccg tgccagggtg gagcacccgt ttcgcatcat caagcggcag
      721 ttcggcttcg tgaaagccag atacaaaggg ctgctgaaaa acgataacca actggcgatg
      781 ttattcaccc tggccaacct gtttcgggtg gaccaaatga tacgtcagtg ggagagatct
      841 cagtaaaaac cggaaataac gccagaaatg gtggaaaaaa tagcctaaat aggctgattc
      901 gatgtgtttg cgggaaaaaa atcggcccag atccgcgaaa ttttaatcag cgagtcagct
      961 tgggaagaaa tgacctgctt attcgcacct tccctaagcg aattgttttt tgcgaaagta
     1021 tttatttgat aaggatttta aaataagtcc taaactcgcc cctccccaca catctttaat
     1081 cgtgaattat taagcaaact gacaaaataa aggggggcgg gttaaaaaaa aagatcaatt
     1141 aattgcaaac acgcaaagac aaaaaaaatg actattgacc gtgattgatt gaatttttat
     1201 tcattaaaaa ttgtaaccaa cgactttcaa gagaaatgat tctctgttgt tttttttttt
     1261 aatgcttata aaatattttt ggatgaatat tgatggatca aagttactgt ttctatggaa
     1321 aaatatattt actttatatg taacaaggat gtaaacatag tgttgactga tgattatttt
     1381 ttttattatg gcctaaagca gttaactgga ctacctctgt ttcatattac atatgaagga
     1441 gtagttaata aatcaatagc aattaagcac aaaagaaaca taagagtatt ggttgacagc
     1501 aggatttttt attcagggaa atggggaggg tacaaaatgt taaggggatc attaaatatg
     1561 ataagccaat ggatgtggct tgacgtttcg gggggggggc ggttttatcc taaagggtgt
     1621 gattatgaca tctatgttaa catgcaagga aatgtaaaaa ataatattga aaaactatat
     1681 tttgcattct taaagaaaaa tgttagccga attgtaaacc attatccacg gctaacaaaa
     1741 aaggaacaag cagtgctgca atgcctactg aaaaatgggg gcattaatga aataaaaagt
     1801 caactaaaaa ttgaagaaaa aacgctatca tgctaccaaa gcaaaataac aagaaaattt
     1861 ggctgcaaaa ggtacataag gtttatgtat ctttacagcc ttaataaaga aatggttgat
     1921 gaaagatggc tcatgccaag tatttaggta aaaaagggga ggggatgtga aggaactctt
     1981 ttatttattt attgcttttt ttttgttttt tttgtcagtt tataattcat attcttatat
     2041 ttcagacaga agaaaaataa aaagaatctt ccgctcgcgc agaaaagcga tgaatagacg
     2101 caaaaaaaaa ttcaaactat tatagaacta tactcacgtt caataaatga tatcagcgcg
     2161 atatataact catgccaatt tcagttggca gataagtacg catactgcat gcaccattta
     2221 tgtataaaac atctatcaaa tatgtcaaag catagtgtca ctatacatta taatgcatct
     2281 ccagcaaatg agaacatata aagaaagaag gatcaaggta agaaataatg aaattgtgtg
     2341 tcgttacaaa taataattat ttctttgccg gcatggaaca tattttctca gaggttcaat
     2401 gctgtctttg tagaatatcg agttatgatg tatatgcatg cactcctaat tcaaacgtaa
     2461 tcattttatt ggatggtgtg aatcacaaag tttcgataaa agagtatagc tatctaaaaa
     2521 aaataggttt acctgttttt tttattctga acacaaactg taatgttaat tccaccctca
     2581 tcggaattaa catcattaac gcacgcgagg ctatcactat tttaaaagat agaatgattt
     2641 ctctctttaa tggggggggg cagcttgatt ataaaccaat aaatttgaca aagaaggagt
     2701 cttttattct tagattatat atagatggat tatcattaac acagataagt gaaaaaacag
     2761 ccattagaaa aaaaacactt ataactcaca cacgaaatat tcttaataag accggtgtaa
     2821 aacaccataa tcaccttaat attttaaaaa acatccttgg catacatttg gctcattaag
     2881 gatggtatag ctttttgttt ccaaagattt gtgcgtttaa aattacatac tttattaatg
     2941 aaggggaatg aatgcgtaga attactatat ttatattatt cctgttagtt gctgtaactt
     3001 ggggaaccac gtggttagct atgaagattg ctcttgaaac tatccctcca gtctttgcta
     3061 ccgggatgag atttttattt tccgctccat tattaatcat tatcgcatgg gtaaaaaaaa
     3121 taccaatttt atttcctgtt ggccagcgtc tatttcaact tgcaattagt atgttttatt
     3181 ttgccattcc tttctctcta atgatttatg gtgaggttta tgtaaaccca ggacttgccg
     3241 ctattatatt tgcaaatatg ccggtggcta ttttaatagc atcattttta tttttgaatg
     3301 aaaaaacaaa ctcaatacag attactggac taattatcgc attagcttca ctttcgttca
     3361 tcctcatcac ggaggcgcgg gaaaggacag aaagccagtg gacgggagtt attgcccttt
     3421 cttctgcagt aataattcat gccatagtat atactcaatg taaaaaaaga tgctgtaaag
     3481 tctctgttat atcgtttaat gcgttaccgt gttttatagc tggggttatt ctttcgctgg
     3541 tggggagtat ctttgagagg ccacaattat cagctttatc tttacactct acattagcaa
     3601 caatgtattt aggctgtttt gctggagttt ttgggatact gtgctatttt tctctgcaga
     3661 aaagggctag cgctttccag gcttcgctcg tatttctcat cttccctcta attgcagtaa
     3721 gcttggaaag ttatatatat gggaaaacca tatcaacata ctcaatctta ctgattatcc
     3781 ccctcgtcat tggaatactt atcacactta tccccaaaaa aactgtcgtt gataaaaaca
     3841 aaatgaatag ctgaaaatat agtgtagata acaattttat gaagtaaaat aatgttcttt
     3901 taaatttatt tgttatctgc taatttgctt ccctgcgctg aaactagcgc agaggaaaat
     3961 taagttatat ttaacttgcg gatgcgatga ggtttattaa cctctagcac ggttcaaata
     4021 tttttttatc tcaagtaact catctcgcga gtttgaaaat gccagcggcc taaacccatt
     4081 atcctttcct tcaagaaaac aattgcaact ttcgattaaa aacgcattgg ctttctgtat
     4141 attgaattcc aacaaagatt cattataaag aagaataaaa aaatcatcct cagggtattg
     4201 aaaaagcttt ttatccataa tcgatcctca agattttata taacatcagt tatatcttgc
     4261 ttagtcctaa taattacgat cagaatgaaa ctaccgcccc cacataataa gcccgccctg
     4321 gctcattata ggtactagca ccttctgaag ttcggtagat ctgcttatcg aggatattac
     4381 tgacaccgat gttaagacga agatttttat taatatcgta attgaagttc gttcccacca
     4441 gagaataagc ccccaagact ttacctgaca tgccgcgagt atcttcactt cgactttccg
     4501 catgggtacg cggtttttgt ctgccgtata acgtccagtt gacgctggcg gaaaacgcct
     4561 gggtgatggt ccagtcaagc gagttattaa ttgtatattt cgggatgatc gacagtgggt
     4621 taccggtgtc tttttgctcc gaggtgatca tccaggtggc attggtattc cagttcagac
     4681 gatctttcac cagcgggaac gccatgctgg cttcgatacc gtcaaccagc gctttccctc
     4741 cattctgcca ctggaggata tatgcgcctg aagcggtttg cccgatagca ttatccccgg
     4801 ccacgatctt attctggtag tcattgcgga agtaggtcac gctggcgtag taatcttccc
     4861 aggcgaactc cagcccaatt tctttattga tactgatttc cggatcgaga tctttatttc
     4921 ctttcaggta gcagccgccc gatgtaatat cttttggaca accgttgcct ttcgagtaga
     4981 gcagataacc tttgctggat tgatacaagt ttggtgcttt gaaggttcgg gcaatccccg
     5041 ctttgacttt gaagtaatcg cccaattcct gcgataggtt caggctgggg ctgaagttac
     5101 cgccggactc gttgagataa tcaaagcgca agccggaaat gatattcgtg ccgggaaccg
     5161 gctcaatatt atcatcaata tacagcgcac tgatttggga atggttttta ctgctgcgat
     5221 ccgcagcaga gccagaaatg ccgcctatat cactgtcatt caccgtaagg ctggtagagg
     5281 aaggggcgtc gagtttatct cgactccact ccacaccaac tgttagcgtt tgatcgaccg
     5341 gttcattcag cggaatatta atctcaccgc tggttcgcca agagctcagg cgattggtcg
     5401 tgaatttttc atccgccaaa atacgccctt cactgccgcc ggataatcct tcattcatgc
     5461 ggttgttatt ggttttctcg taataaacac caaaacgact ttgtccccag tcccaaatac
     5521 cattatgcgc aatgccataa ttctgccggt aaaggcggtt cgtctctttg cgggatttcg
     5581 ctagggaagg tgcgaacaag ttcctgatat gagatcatca tattcatccg gagcgcatcc
     5641 cagagggaca tcatgagcca tcaactcacc ttcgccgata gtgaattcag cactaagcgc
     5701 cgtcagaccc gaaaagagat tttcctctcc cgcatggagc agattctgcc atggcaaaac
     5761 atggtggaag tcatcgagcc gttttat
//
