LOCUS       NZ_CP095114             4468 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6157 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP095114
VERSION     NZ_CP095114.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923320
            Assembly: GCF_025561605.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4468)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4468)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 286x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 08:28:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,875
            CDSs (total)                      :: 2,794
            Genes (coding)                    :: 2,675
            CDSs (with protein)               :: 2,675
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 119
            CDSs (without protein)            :: 119
            Pseudo Genes (ambiguous residues) :: 0 of 119
            Pseudo Genes (frameshifted)       :: 62 of 119
            Pseudo Genes (incomplete)         :: 41 of 119
            Pseudo Genes (internal stop)      :: 37 of 119
            Pseudo Genes (multiple problems)  :: 17 of 119
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP095114.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4468
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6157"
                     /host="Camel"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya"
                     /collection_date="2002"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            join(3912..4468,1..714)
                     /gene="mobV"
                     /locus_tag="MUA55_RS14185"
                     /old_locus_tag="MUA55_14190"
                     /pseudo=""
     CDS             join(3912..4468,1..714)
                     /gene="mobV"
                     /locus_tag="MUA55_RS14185"
                     /old_locus_tag="MUA55_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /name="mobV"
     gene            1241..2185
                     /locus_tag="MUA55_RS14190"
                     /old_locus_tag="MUA55_14195"
     CDS             1241..2185
                     /locus_tag="MUA55_RS14190"
                     /old_locus_tag="MUA55_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            2347..3726
                     /gene="tet(K)"
                     /locus_tag="MUA55_RS14195"
                     /old_locus_tag="MUA55_14200"
     ARG             2348..3723
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          1242..2185
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.894"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2..711
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.89e-115"
     Typing          3913..4466
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.11e-119"
ORIGIN
        1 ttagaacgtg ggcaatcaag acaagtaaca aatgctaaac atgagcaaat aagtcagtat
       61 aaacaaaaaa cagaatatca taagcaagaa tatgaacgtg agagccaaaa aacagaccat
      121 ataaagcaaa agaacgataa attaatgcaa gagtaccaaa aatcgttaaa tacgcttaaa
      181 aagcctataa atgttccgta tgagcaagaa actgaaaaag taggtggttt atttagcaaa
      241 gaaatacaag aaactggaaa tgttgtaata agccaaaaag atttcaatga atttcagaaa
      301 cagataaaag ctgctcaaga tatttcggaa gattacgagt atataaagtc tggtagagcc
      361 ttagatgata aagataagga aatacgagag aaagatgatt tattaaataa agcagttgag
      421 cgtattgaaa acgcagacga taattttaac caactttacg aaaatgcaaa gccacttaaa
      481 gagaatatag aaatagcgtt aaagctttta aaaatcttac taaaagagtt agaacgagtt
      541 ttaggaagaa atacctttgc ggaaagagtt aataagttaa cagaagatga accaaaacta
      601 aatggtttag caggaaactt agataaaaaa atgaatccag aattatattc agaacaggaa
      661 cagcaacaag aacaacaaaa gaatcaaaaa cgagatagag gtatgcactt atagaacatg
      721 catttatgcc gagaaaactt attggttgga atgggctatg tgttagctaa cttgttagcg
      781 agttggttgg acttgaattg ggattaatcc caagaaagta ccaactcaac aacacataaa
      841 gccctgtagg ttccgaccaa taaggaaatt ggaataaagc aataaaagga gttgaagaaa
      901 tgaaattcag agaagccttt gagaatttta taacaagtaa gtatgtactt ggtgttttag
      961 tagttttaac tgtttaccag ataatacaaa tgcttaaata aaaaaagact tgatctgatt
     1021 agaccaagtc ttttgatagt gttatattaa taacaaaata aaaaggagtc gctcacgccc
     1081 tgaccaaagt ttgtgaacga catcattcaa agaaaaaaac actgagttat ttttataatc
     1141 ttgtatattt agatattaaa cgatatttaa atatacatca agatatatat ttgggtgagc
     1201 gattccttaa acgaaattga gattaaggag tcgatttttt atgtataaaa acaatcatgc
     1261 aaatcattca aatcatttgg aaaatcacga tttagacaat ttttctaaaa ccggctactc
     1321 taatagccgg ttggacgcac atactgtgtg catatctgat ccaaaattaa gttttgatgc
     1381 aatgacgatc gttggaaatc tcaaccgaga caacgctcaa gccctttcta aatttatgag
     1441 tgtagagccc caaataagac tttgggatat tcttcaaaca aagtttaaag ctaaagcact
     1501 tcaagaaaaa gtttatattg aatatgacaa agtgaaagca gatagttggg atagacgtaa
     1561 tatgcgtatt gaatttaatc caaacaaact tacacgagat gaaatgattt ggttaaaaca
     1621 aaatataata agctacatgg aagatgacgg ttttacaaga ttagatttag cctttgattt
     1681 tgaagatgat ttgagtgact actatgcaat gtctgataaa gcagttaaga aaactatttt
     1741 ttatggtcgt aatggtaagc cagaaacaaa atattttggc gtgagagata gtaatagatt
     1801 tattagaatt tataataaaa agcaagaacg taaagataat gcagatgctg aagttatgtc
     1861 tgaacattta tggcgtgtag aaatcgaact taaaagagat atggtggatt actggaatga
     1921 ttgctttagt gatttacata tcttgcaacc agattggaaa actatccaac gcactgcgga
     1981 tagagcaata gtttttatgt tattgagtga tgaagaagaa tggggaaagc tccacagaaa
     2041 ttctagaaca aaatataaga atttgataaa agaaatttcg ccagtcgatt taacggactt
     2101 aatgaaatcg actttaaaag cgaacgaaaa acaattgcaa aaacaaatcg atttttggca
     2161 acatgaattt aaattttgga aatagtgtac atattaatat tactgaacaa aaatgatata
     2221 tttaaactat tctaatttag gaggattttt ttatgaagtg tctatttaaa aatttgggga
     2281 atttatatga ggtgaaagaa taatttaccc ctataaactt tagtcacctc aagtaaagag
     2341 gtaaaattgt ttagtttata taaaaaattt aaaggtttgt tttatagcgt tttattttgg
     2401 ctttgtattc tttcattttt tagtgtatta aatgaaatgg ttttaaatgt ttctttacct
     2461 gatattgcaa atcattttaa tactactcct ggaattacaa actgggtaaa cactgcatat
     2521 atgttaactt tttcgatagg aacagcagta tatggaaaat tatctgatta tataaatata
     2581 aaaaaattgt taattattgg tattagtttg agctgtcttg gttcattgat tgcttttatt
     2641 ggtcacaatc acttttttat tttgattttt ggtaggttag tacaaggagt aggatctgct
     2701 gcattccctt cactgattat ggtggttgta gctagaaata ttacaagaaa aaaacaaggc
     2761 aaagcctttg gttttatagg atcaattgta gctttaggtg aagggttagg tccttcaata
     2821 gggggaataa tagcacatta tattcattgg tcttacctac ttatacttcc tatgattaca
     2881 atagtaacta taccttttct tattaaagta atggtacctg gtaaatcaac aaaaaataca
     2941 ttagatatcg taggtattgt tttaatgtct ataagtatta tatgttttat gttatttacg
     3001 acaaattata attggacttt tttaatactc ttcacaatct tttttgtgat ttttattaaa
     3061 catatttcaa gagtttctaa cccttttatt aatcctaaac tagggaaaaa cattccgttt
     3121 atgcttggtt tgttttctgg tgggctaata ttttctatag tagctggttt tatatcaatg
     3181 gtgccttata tgatgaaaac tatttatcat gtaaatgtag cgacaatagg taatagtgtt
     3241 atttttcctg gaaccatgag tgttattgtt tttggttatt ttggtggttt tttagtggat
     3301 agaaaaggat cattatttgt ttttatttta ggatcattgt ctatctctat aagtttttta
     3361 actattgcat tttttgttga gtttagtatg tggttgacta cttttatgtt tatatttgtt
     3421 atgggcggat tatcttttac taaaacagtt atatcaaaaa tagtatcaag tagtctttct
     3481 gaagaagaag ttgcttctgg aatgagtttg ctaaatttca caagtttttt atcagaggga
     3541 acaggtatag caattgtagg aggtttattg tcactacaat tgattaatcg taaactagtt
     3601 ctggaattta taaattattc ttctggagtg tatagtaata ttcttgtagc catggctatc
     3661 cttattattt tatgttgtct tttgacgatt attgtattta aacgttctga aaagcagttt
     3721 gaatagttat attatatttt ggtttagaac tatgagtggc tagcattttg ccactcattt
     3781 tttgcgttag caaaaacagg tttaagcctc gcagagcaca cgtattaacg acttattaaa
     3841 aataagtcta gtgtgttaga cttaaactat taaatacaca tgaaaccttt gtgcttagga
     3901 gtgattttta tatgtcttat tccattgtta gagtttcaaa agttaaatct ggaacaaata
     3961 caacgggcat acaaaaacat gttcaaagag aaaataataa ttatgaaaat gaagatatag
     4021 accatagtaa aacttactta aattatgatt tggtaaatgc taataaacag aattttaata
     4081 acttgattga tgaaaaaatc gaacagaatt atacaggcaa aagaaaaatt agaacagacg
     4141 cgattaaaca cattgatggt ttaattacat cagacaatga tttctttgat aatcaaacgc
     4201 cagaagatac aaagcagttt tttgaatatg ctaaagagtt tttagaacaa gaatacggta
     4261 aagataattt attatatgca acagttcaca tggacgaaaa aacaccacat atgcattatg
     4321 gcgttgttcc aataactgat gatggtcgtt taagtgctaa agaagttgta ggtaataaaa
     4381 aagctttaac agcgtttcaa gatagattta atgagcatgt taaacaacga ggatatgatt
     4441 tagaacgtgg gcaatcaaga caagtaac
//
