LOCUS       NZ_CP094854             2402 bp    DNA     circular CON 31-MAY-2024
DEFINITION  Staphylococcus aureus strain NY2010 plasmid pNY2010, complete
            sequence.
ACCESSION   NZ_CP094854
VERSION     NZ_CP094854.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN27065448
            Assembly: GCF_022832835.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Zhou,D.
  TITLE     Complete sequence of strain NY2010
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-MAR-2022) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology, No.
            20, Dongdajie, Fengtai, Beijing, Beijng 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. v3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022832835.1-RS_2024_05_31
            Annotation Date                   :: 05/31/2024 03:47:22
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,991
            CDSs (total)                      :: 2,912
            Genes (coding)                    :: 2,788
            CDSs (with protein)               :: 2,788
            Genes (RNA)                       :: 79
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 75 of 124
            Pseudo Genes (incomplete)         :: 41 of 124
            Pseudo Genes (internal stop)      :: 26 of 124
            Pseudo Genes (multiple problems)  :: 17 of 124
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094854.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="NY2010"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pNY2010"
                     /geo_loc_name="China: Beijing"
                     /lat_lon="40 N 116 E"
                     /collection_date="2014"
     gene            225..701
                     /locus_tag="MTX62_RS14915"
                     /old_locus_tag="MTX62_14915"
     CDS             225..701
                     /locus_tag="MTX62_RS14915"
                     /old_locus_tag="MTX62_14915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     gene            1445..2179
                     /gene="erm(C)"
                     /locus_tag="MTX62_RS14920"
                     /old_locus_tag="MTX62_14920"
     ARG             1446..2176
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             1446..2179
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          226..711
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcatttacgt tagataaccc cctgatatgc tccgacgctt tatatagaaa agaagattca
       61 actaggtaaa atcttaatat aggttgagat gataaggttt ataaggaatt tgtttgttct
      121 aatttttcac tcattttgtt ctaatttctt ttaacaaatg ttcttttttt tttagaacag
      181 ttatgatata gttagaatag tttaaaataa ggagtgagaa aaagatgaaa gaaagatatg
      241 gaacagtcta taaaggctct cagaggctca tagacgaaga aagtggagaa gtcatagagg
      301 tagacaagtt ataccgtaaa caaacgtctg gtaacttcgt aaaggcatat atagtgcaat
      361 taataagtat gttagatatg attggcggaa aaaaacttaa aatcgttaac tatatcctag
      421 ataatgtcca cttaagtaac aatacaatga tagctacaac aagagaaata gcaaaagcta
      481 caggaacaag tctacaaaca gtaataacaa cacttaaaat cttagaagaa ggaaatatta
      541 taaaaagaaa aactggagta ttaatgttaa accctgaact actaatgaga ggcgacgacc
      601 aaaaacaaaa atacctctta ctcgaatttg ggaactttga gcaagaggca aatgaaaaac
      661 aagaaaatgc attatctgat tattattctt tcaaggacta gtataacata aaatcgtcta
      721 caaatagaca aaaaacctgc acgcttaatg tagatcaaaa gcttaacgca aatgaaatag
      781 attgacctcc caataacacc acgtagttat tgggaggtca atctatgaaa tgcgattaag
      841 ctttttctaa ttcacataag cgtgcaggtt taaagtacat aaaaaatata atgaaaaaaa
      901 gcatcattat actaacgtta taccaacatt atactctcat tatactaatt gcttattcca
      961 atttcctatt ggttggaacc aacaggcgtt agtgtgttgt tgagttggta ctttcatggg
     1021 attaatccca tgaaaccccc aaccaactcg ccaaagcttt ggctaacaca cacgccattc
     1081 caaccaatag ttttctcggc ataaagccat gctctgacgc ttaaatgcac taatgcctta
     1141 aaaaaacatt aaagtctaac acactagact tatttacttc gtaattaagt cgttaaaccg
     1201 tgtgctctac gaccaaaagt ataaaacctt taagaacttt cttttttctt gtaaaaaaag
     1261 aaactagata aatctctcat atcttttatt caataatcgc atcagattgc agtataaatt
     1321 taacgatcac tcatcatgtt catatttatc agagctcgtg ctataattat actaatttta
     1381 ttaagtggtt ataatgaatc gttaataagc aaaattcatt ataaccaaat taaagagggt
     1441 tataatgaac gagaaaaata taaaacacag tcaaaacttt attacttcaa aacataatat
     1501 agataaaata atgacaaata taagattaaa tgaacatgat aatatctttg aaatcggctc
     1561 aggaaaaggg cattttaccc ttgaattagt acagaggtgt aatttcgtaa ctgccattga
     1621 aatagaccat aaattatgca aaactacaga aaataaactt gttgatcacg ataatttcca
     1681 agttttaaac aaggatatat tgcagtttaa atttcctaaa aaccaatcct ataaaatatt
     1741 tggtaatata ccttataaca taagtacgga tataatacgc aaaattgttt ttgatagtat
     1801 agctgatgag atttatttaa tcgtggaata cgggtttgct aaaagattat taaatacaaa
     1861 acgctcattg gcattatttt taatggcaga agttgatatt tctatattaa gtatggttcc
     1921 aagagaatat tttcatccta aacctaaagt gaatagctca cttatcagat taaatagaaa
     1981 aaaatcaaga atatcacaca aagataaaca gaagtataat tatttcgtta tgaaatgggt
     2041 taacaaagaa tacaagaaaa tatttacaaa aaatcaattt aacaattcct taaaacatgc
     2101 aggaattgac gatttaaaca atattagctt tgaacaattc ttatctcttt tcaatagcta
     2161 taaattattt aataagtaag ttaagggatg cagtttatgc atcccttaac ttgtttttcg
     2221 tgtacctatt ttttgtgaat cgattatgtc ttttgcgcat tcacttcttt tctatataaa
     2281 tatgagcgaa gcgaataagc gtcggaaaag cagcaaaaag tttccttttt gctgttggag
     2341 catgggggtt cagggggtgc agtatctgac gtcaatgccg agcgaaagcg agccgaaggg
     2401 ta
//
