LOCUS       NZ_CP094777             3587 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6191 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP094777
VERSION     NZ_CP094777.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923335
            Assembly: GCF_025559585.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3587)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3587)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 671x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:17:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,780
            CDSs (total)                      :: 2,698
            Genes (coding)                    :: 2,584
            CDSs (with protein)               :: 2,584
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 114
            CDSs (without protein)            :: 114
            Pseudo Genes (ambiguous residues) :: 0 of 114
            Pseudo Genes (frameshifted)       :: 61 of 114
            Pseudo Genes (incomplete)         :: 39 of 114
            Pseudo Genes (internal stop)      :: 33 of 114
            Pseudo Genes (multiple problems)  :: 15 of 114
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094777.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3587
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6191"
                     /isolation_source="milk"
                     /host="Cattle"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya"
                     /collection_date="2009"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            complement(join(3579..3587,1..204))
                     /locus_tag="MUA69_RS13885"
                     /old_locus_tag="MUA69_13860"
     CDS             complement(join(3579..3587,1..204))
                     /locus_tag="MUA69_RS13885"
                     /old_locus_tag="MUA69_13860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_262634553.1"
                     /translation="MLGRNIKLLRISENLSQDDLAKKIKVSKQSIYVWEKGEVLPDCEN
                     LMILSKYFDISIDSLVNTKLSISKI"
                     /name="helix-turn-helix transcriptional regulator"
     gene            319..723
                     /locus_tag="MUA69_RS13890"
                     /old_locus_tag="MUA69_13865"
     CDS             319..723
                     /locus_tag="MUA69_RS13890"
                     /old_locus_tag="MUA69_13865"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050964469.1"
                     /translation="MGKVVKFLVALILVISFSFPFGNGNAHAVSAPKGCKTVSKLSSAQ
                     VKKTFNNIDKHSTSRNAGYIITGAIASKIPYIGPPIAGVTTMAGFLDGMKYGMWANAAA
                     NNKKAILYHCKPKNPSETNGPIDHSGVKFY"
                     /name="hypothetical protein"
     gene            1549..2544
                     /locus_tag="MUA69_RS13895"
                     /old_locus_tag="MUA69_13870"
     CDS             1549..2544
                     /locus_tag="MUA69_RS13895"
                     /old_locus_tag="MUA69_13870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_078370242.1"
                     /translation="MQYNTTRYIDENQDNKTLKDMMKNGKQRPWREKKIDNVSYAEILE
                     ILKIKKSFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGETLEKSLKHLTESFRRLFKYKKVSKNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVESAYFKKQGQYIKQSEWVDLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDDDEKNQEIVSDLEKGLYRKRMLSYGGMLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            3131..3310
                     /locus_tag="MUA69_RS13900"
                     /old_locus_tag="MUA69_13875"
     CDS             3131..3310
                     /locus_tag="MUA69_RS13900"
                     /old_locus_tag="MUA69_13875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002500874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053861068.1"
                     /translation="MKIFFYFVYFFVSFFILYSLLNLLFLKEFAIYRSLIATMLFSVFM
                     TLYVFVLKGDKKKK"
                     /name="hypothetical protein"
     Typing          1550..2536
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.081"
                     /coverage="98.0"
                     /evalue="0.0"
ORIGIN
        1 ggatattgaa agttttgtgt ttacgagtga atctatgctt atatcgaagt attttgaaag
       61 aatcattaaa ttttcacaat ctggtaaaac ttctcctttt tcccatacgt atatactttg
      121 tttacttact tttatttttt tagctaaatc gtcttgagat aggttttctg atattcttaa
      181 taattttata tttcttccta acatgcttat ccccctttgt tttgactaaa aaactttata
      241 taaaataaaa taaacctttt atttttgatg tttgtttttg tattaaaatt ataccaaata
      301 tccgaaaggg tgatgtttat gggaaaagtt gttaaatttt tagttgcatt gattttggtt
      361 atttcgttta gttttccatt tggaaatggt aatgctcatg ctgtttctgc gcctaaaggt
      421 tgtaagacgg ttagtaagct ttcaagtgct caagttaaga aaacatttaa taatattgat
      481 aaacactcta caagtaggaa tgctggatat attatcactg gagctattgc ttctaaaata
      541 ccttatatag gtcctccaat tgctggagtt acaactatgg ctggttttct ggatggaatg
      601 aaatacggaa tgtgggctaa tgctgcagct aataataaga aggcaattct atatcattgc
      661 aaaccaaaaa atcctagtga aacaaatggc cctattgatc attctggagt taaattttat
      721 tagaaaagaa aaagaagaag gtttaaacct tcttcttttc ttttcttttt ttatcaaatg
      781 atatagataa aaaaaggagc acaccaaaaa ttataaatac agtagttatt tgaaatttaa
      841 atacatatag acaaagcaag ggtatgctta ttaagatgat tatggatata aaatctatta
      901 aatcgaattt tgtttttttc atttttttac ccctttacct taataataac aaaatttagg
      961 attaagtcat ttgttgttta atgttttgag tttatgttga aaagagttcc taaaggtcag
     1021 taaagtaatt gaaactttta ctcattttca attagacaaa caagttaata ggtttttaaa
     1081 gaatgatatt cgtgtattag aaattcaaag acacagtaat tggttatata tttcagctat
     1141 tgttttctat gaggatattt aaggagataa atataaaaaa aatattttac ttttcagctt
     1201 tttcattaac tgtatttata gcatttaatt ttgttaatac aattttattt gataaccctt
     1261 ttgacttttt agaaagtctc atttattcgt tagtttttac attaattttt ttaggtttag
     1321 agggatataa aaagagaaag aaatagattg tttttgaaac gagtgtgaac gagtttcttc
     1381 ttgtcttgat actatataga aataacgttc ttttctaaaa tccttttgaa gcgttgatat
     1441 gacggcgttt tatactgttt tccgtgggga aaataaaatt tgacataaaa aaactccagt
     1501 aatatgatta aggtgtctaa tctaaatcaa tactggaggt ctttttatat gcaatacaat
     1561 actactagat atatagacga aaatcaagat aataaaacat taaaagatat gatgaaaaat
     1621 gggaaacagc gcccatggag agaaaagaaa atagataatg tgagttatgc agagatacta
     1681 gaaattttaa aaattaaaaa gtcttttaac gtaaaacaat gtggtaacat tttagagttc
     1741 aagccgactg atgaaggtta tttgaaatta cataagactt ggttttgtaa atcgaaatta
     1801 tgtccagttt gtaattggcg gcgtgcgatg aaaaatagtt atcaagctca aagagtgatt
     1861 gaagaagtcg ttaaagaaaa gcctaaagcg cgttggttgt ttcttacatt atcaacacgg
     1921 aatgcgatag atggggagac tttagaaaaa agtcttaaac atttaaccga gtcatttaga
     1981 agactattta aatataaaaa agttagtaaa aatttaattg gttttatgcg ttcaactgaa
     2041 gtaacagtta ataaaaatga tggtagttac aatcaacata tgcatgtttt gttatgtgtt
     2101 gaaagtgctt attttaaaaa gcaaggtcag tatataaaac aaagtgaatg ggtcgattta
     2161 tggcaaaaag cattacaagt tgattatcga cctgtcgcaa atattaaagc gatcaaacca
     2221 aaccaaaaag gcgataaaga cattgaatcg gcaatcaaag aaacctcaaa atattcggtt
     2281 aaatcatctg attttttaac tgatgatgat gaaaaaaatc aagaaattgt aagtgattta
     2341 gaaaaaggtt tgtatcgaaa acgtatgttg agttatggtg gaatgcttaa acagaagcat
     2401 aaaattttaa atttagacga tgccgaagac ggcaatttaa ttaatacaag tgatgaagat
     2461 aaaacaacag atgaagaaga aaaggcacat tcgattacgg caatttggaa tttcgaaaag
     2521 caaaattatt atttaagaca ttagtgataa ctgatgtctt tttttattga ttttttgtaa
     2581 aaaagtactg tcttattttt gtgacaaatg ctgtatgtag tgtcacaaaa ctgtgacaaa
     2641 cgcaatatat tgtgtcacaa aagtgtgaca tttcgtcttt ttatgccccc atgcaaaaag
     2701 accgacgaag tcttgaaata tctggctttg ccagatacct catctataga tgggggcata
     2761 tttcccttat gctcttacgg agattttaga gttaaattaa aatttctaag tttttgataa
     2821 gaaaagtcct gcaggaattt agaaaaacat ggggaagttt taaagtattt tatgctaatt
     2881 tttaatttgc atgtaaatgg gcagtgtccg aaaaatcgac actgggtttg atcgaatttt
     2941 ttattataaa atcagaatat atttatttgg ctcatatttg cgttttaaga gattatgtaa
     3001 gttttagata taaaactata tgatttatcc ctaaatcttt aaaatacccc cttaaaattc
     3061 aaaataaagg tatttataat ttaaataagt cttttgataa agtttgttga atttggaagg
     3121 aggatttgtt ttgaaaatct ttttttattt tgtctatttt ttcgtttctt tttttattct
     3181 gtattctttg cttaatttat tatttttaaa agaatttgct atatatcgaa gtttaattgc
     3241 tactatgctt ttttcagtat ttatgacgct atatgtattt gtattaaaag gggataaaaa
     3301 gaaaaagtag aacacgcatt tatgccgaga aaatttattg atgttgagaa gaacccttaa
     3361 ctaaacttgg agacgaatgt cggcatagcg tgagctatta agccgaccat tcgacaagtt
     3421 tagggattgt taagggttcc gaggctcaac gtcaataaag caattggaat aaagcaatat
     3481 ttattatttt tcactagtct tagtattagt tttggatatt gaaagttttg tgtttacgag
     3541 tgaatctatg cttatatcga agtattttga aagaatcatt aaatttt
//
