LOCUS       NZ_CP094771             3783 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6201 plasmid unnamed, complete
            sequence.
ACCESSION   NZ_CP094771
VERSION     NZ_CP094771.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923338
            Assembly: GCF_025559465.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 966x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:05:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,797
            CDSs (total)                      :: 2,716
            Genes (coding)                    :: 2,600
            CDSs (with protein)               :: 2,600
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 63 of 116
            Pseudo Genes (incomplete)         :: 37 of 116
            Pseudo Genes (internal stop)      :: 35 of 116
            Pseudo Genes (multiple problems)  :: 15 of 116
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094771.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6201"
                     /isolation_source="milk"
                     /host="Cattle"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed"
                     /geo_loc_name="Kenya:Goroukessa"
                     /collection_date="2009"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            complement(join(3280..3783,1..762))
                     /locus_tag="MUA35_RS13975"
                     /old_locus_tag="MUA35_13935"
     CDS             complement(join(3280..3783,1..762))
                     /locus_tag="MUA35_RS13975"
                     /old_locus_tag="MUA35_13935"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_262608071.1"
                     /translation="MQYNTTRYIDENQDNKTLKDMMKNGKQRPWREKKIDNVSYAEILE
                     ILKIKKSFNVKQCGNILEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGETLEKSLKHLTESFRRLFKYKKVSKNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVESAYFKKQGQYIKQSEWVDLWQKALQVDYRPVANIKAI
                     KPNQKGDKDIESAIKETSKYSVKSSDFLTDDDVTVNKNDGSYNQHMHVLLCVESAYFKK
                     QGQYIKQSEWVDLWQKALQVDYRPVANIKAIKPNQKGDKDIESAIKETSKYSVKSSDFL
                     TDDDEKNQEIVSDLEKGLYRKRMLSYGGMLKQKHKILNLDDAEDGNLINTSDEDKTTDE
                     EEKAHSITAIWNFEKQNYYLRH"
                     /name="protein rep"
     gene            complement(1588..1992)
                     /locus_tag="MUA35_RS13980"
                     /old_locus_tag="MUA35_13940"
     CDS             complement(1588..1992)
                     /locus_tag="MUA35_RS13980"
                     /old_locus_tag="MUA35_13940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_050964469.1"
                     /translation="MGKVVKFLVALILVISFSFPFGNGNAHAVSAPKGCKTVSKLSSAQ
                     VKKTFNNIDKHSTSRNAGYIITGAIASKIPYIGPPIAGVTTMAGFLDGMKYGMWANAAA
                     NNKKAILYHCKPKNPSETNGPIDHSGVKFY"
                     /name="hypothetical protein"
     gene            2107..2340
                     /locus_tag="MUA35_RS13985"
                     /old_locus_tag="MUA35_13945"
     CDS             2107..2340
                     /locus_tag="MUA35_RS13985"
                     /old_locus_tag="MUA35_13945"
                     /inference="COORDINATES: protein motif:HMM:NF024252.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="WP_070021051.1"
                     /translation="MLGRNIKLLRISENLSQDDLAKKIKVSKQSIYVWEKGEVLPDCEN
                     LMILSKYFDISIDSLVNTKLSISKTNTKTSEK"
                     /name="helix-turn-helix transcriptional regulator"
     gene            complement(2514..2693)
                     /locus_tag="MUA35_RS13990"
                     /old_locus_tag="MUA35_13950"
     CDS             complement(2514..2693)
                     /locus_tag="MUA35_RS13990"
                     /old_locus_tag="MUA35_13950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002500874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053861068.1"
                     /translation="MKIFFYFVYFFVSFFILYSLLNLLFLKEFAIYRSLIATMLFSVFM
                     TLYVFVLKGDKKKK"
                     /name="hypothetical protein"
     Typing          complement(2..762)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.646"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3281..3777)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.169"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atcatcatca gttaaaaaat cagatgattt aaccgaatat tttgaggttt ctttgattgc
       61 cgattcaatg tctttatcgc ctttttggtt tggtttgatc gctttaatat ttgcgacagg
      121 tcgataatca acttgtaatg ctttttgcca taaatcgacc cattcacttt gttttatata
      181 ctgaccttgc tttttaaaat aagcactttc aacacataac aaaacatgca tatgttgatt
      241 gtaactacca tcatttttat taactgttac ttcagttgaa cgcataaaac caattaaatt
      301 tttactaact tttttatatt taaatagtct tctaaatgac tcggttaaat gtttaagact
      361 tttttctaaa gtctccccat ctatcgcatt ccgtgttgat aatgtaagaa acaaccaacg
      421 cgctttaggc ttttctttaa cgacttcttc aatcactctt tgagcttgat aactattttt
      481 catcgcacgc cgccaattac aaactggaca taatttcgat ttacaaaacc aagtcttatg
      541 taatttcaaa taaccttcat cagtcggctt gaactctaaa atgttaccac attgttttac
      601 gttaaaagac tttttaattt ttaaaatttc tagtatctct gcataactca cattatctat
      661 tttcttttct ctccatgggc gctgtttccc atttttcatc atatctttta atgttttatt
      721 atcttgattt tcgtctatat atctagtagt attgtattgc atataaaaag acctccagta
      781 ttgatttaga ttagacacct taatcatatt actggagttt ttttatgtca aattttattt
      841 tccccacgga aaacagtata aaacgccgtc atatcaacgc ttcaaaagga ttttagaaaa
      901 gaacgttatt tctatatagt atcaagacaa gaagaaactc gttcacactc gtttcaaaaa
      961 caatctattt ctttctcttt ttatatccct ctaaacctaa aaaaattaat gtaaaaacta
     1021 acgaataaat gagactttct aaaaagtcaa aagggttatc aaataaaatt gtattaacaa
     1081 aattaaatgc tataaataca gttaatgaaa aagctgaaaa gtaaaatatt ttttttatat
     1141 ttatctcctt aaatatcctc atagaaaaca atagctgaaa tatataacca attactgtgt
     1201 ctttgaattt ctaatacacg aatatcattc tttaaaaacc tattaacttg tttgtctaat
     1261 tgaaaatgag taaaagtttc aattacttta ctgaccttta ggaactcttt tcaacataaa
     1321 ctcaaaacat taaacaacaa atgacttaat cctaaatttt gttattatta aggtaaaggg
     1381 gtaaaaaaat gaaaaaaaca aaattcgatt taatagattt tatatccata atcatcttaa
     1441 taagcatacc cttgctttgt ctatatgtat ttaaatttca aataactact gtatttataa
     1501 tttttggtgt gctccttttt ttatctatat catttgataa aaaaagaaaa gaaaagaaga
     1561 aggtttaaac cttcttcttt ttcttttcta ataaaattta actccagaat gatcaatagg
     1621 gccatttgtt tcactaggat tttttggttt gcaatgatat agaattgcct tcttattatt
     1681 agctgcagca ttagcccaca ttccgtattt cattccatcc agaaaaccag ccatagttgt
     1741 aactccagca attggaggac ctatataagg tattttagaa gcaatagctc cagtgataat
     1801 atatccagca ttcctacttg tagagtgttt atcaatatta ttaaatgttt tcttaacttg
     1861 agcacttgaa agcttactaa ccgtcttaca acctttaggc gcagaaacag catgagcatt
     1921 accatttcca aatggaaaac taaacgaaat aaccaaaatc aatgcaacta aaaatttaac
     1981 aacttttccc ataaacatca ccctttcgga tatttggtat aattttaata caaaaacaaa
     2041 catcaaaaat aaaaggttta ttttatttta tataaagttt tttagtcaaa acaaaggggg
     2101 ataagcatgt taggaagaaa tataaaatta ttaagaatat cagaaaacct atctcaagac
     2161 gatttagcta aaaaaataaa agtaagtaaa caaagtatat acgtatggga aaaaggagaa
     2221 gttttaccag attgtgaaaa tttaatgatt ctttcaaaat acttcgatat aagcatagat
     2281 tcactcgtaa acacaaaact ttcaatatcc aaaactaata ctaagactag tgaaaaataa
     2341 taaatattgc tttattccaa ttgctttatt gacgttgagc ctcggaaccc ttaacaatcc
     2401 ctaaacttgt cgaatggtcg gcttaatagc tcacgctatg ccgacattcg tctccaagtt
     2461 tagttaaggg ttcttctcaa catcaataaa ttttctcggc ataaatgcgt gttctacttt
     2521 ttctttttat ccccttttaa tacaaataca tatagcgtca taaatactga aaaaagcata
     2581 gtagcaatta aacttcgata tatagcaaat tcttttaaaa ataataaatt aagcaaagaa
     2641 tacagaataa aaaaagaaac gaaaaaatag acaaaataaa aaaagatttt caaaacaaat
     2701 cctccttcca aattcaacaa actttatcaa aagacttatt taaattataa atacctttat
     2761 tttgaatttt aagggggtat tttaaagatt tagggataaa tcatatagtt ttatatctaa
     2821 aacttacata atctcttaaa acgcaaatat gagccaaata aatatattct gattttataa
     2881 taaaaaattc gatcaaaccc agtgtcgatt tttcggacac tgcccattta catgcaaatt
     2941 aaaaattagc ataaaatact ttaaaacttc cccatgtttt tctaaattcc tgcaggactt
     3001 ttcttatcaa aaacttagaa attttaattt aactctaaaa tctccgtaag agcataaggg
     3061 aaatatgccc ccatctatag atgaggtatc tggcaaagcc agatatttca agacttcgtc
     3121 ggtctttttg catgggggca taaaaagacg aaatgtcaca cttttgtgac acaatatatt
     3181 gcgtttgtca cagttttgtg acactacata cagcatttgt cacaaaaata agacagtact
     3241 tttttacaaa aaatcaataa aaaaagacat cagttatcac taatgtctta aataataatt
     3301 ttgcttttcg aaattccaaa ttgccgtaat cgaatgtgcc ttttcttctt catctgttgt
     3361 tttatcttca tcacttgtat taattaaatt gccgtcttcg gcatcgtcta aatttaaaat
     3421 tttatgcttc tgtttaagca ttccaccata actcaacata cgttttcgat acaaaccttt
     3481 ttctaaatca cttacaattt cttgattttt ttcatcatca tcagttaaaa aatcagatga
     3541 tttaaccgaa tattttgagg tttctttgat tgccgattca atgtctttat cgcctttttg
     3601 gtttggtttg atcgctttaa tatttgcgac aggtcgataa tcaacttgta atgctttttg
     3661 ccataaatcg acccattcac tttgttttat atactgacct tgctttttaa aataagcact
     3721 ttcaacacat aacaaaacat gcatatgttg attgtaacta ccatcatttt tattaactgt
     3781 tac
//
