LOCUS       NZ_CP094767             4740 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6215 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP094767
VERSION     NZ_CP094767.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923340
            Assembly: GCF_025559325.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4740)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4740)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 966x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:24:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,952
            CDSs (total)                      :: 2,870
            Genes (coding)                    :: 2,745
            CDSs (with protein)               :: 2,745
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 62 of 125
            Pseudo Genes (incomplete)         :: 44 of 125
            Pseudo Genes (internal stop)      :: 41 of 125
            Pseudo Genes (multiple problems)  :: 18 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094767.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4740
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6215"
                     /isolation_source="nasal swab"
                     /host="Camel"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed3"
                     /geo_loc_name="Kenya:Isiolo"
                     /collection_date="2014"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            complement(join(4693..4740,1..102))
                     /locus_tag="MUA45_RS14735"
                     /old_locus_tag="MUA45_14730"
     CDS             complement(join(4693..4740,1..102))
                     /locus_tag="MUA45_RS14735"
                     /old_locus_tag="MUA45_14730"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_262633730.1"
                     /translation="MSKNLDKGLVISTVLNVILCMLLILTMRVESLTVVLANLLASWLD
                     LNWD"
                     /name="hypothetical protein"
     gene            complement(289..1530)
                     /gene="mobV"
                     /locus_tag="MUA45_RS14740"
                     /old_locus_tag="MUA45_14735"
     CDS             complement(289..1530)
                     /gene="mobV"
                     /locus_tag="MUA45_RS14740"
                     /old_locus_tag="MUA45_14735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            complement(1716..3095)
                     /gene="tet(K)"
                     /locus_tag="MUA45_RS14745"
                     /old_locus_tag="MUA45_14740"
     ARG             complement(1720..3095)
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            complement(3257..4201)
                     /locus_tag="MUA45_RS14750"
                     /old_locus_tag="MUA45_14745"
     CDS             complement(3257..4201)
                     /locus_tag="MUA45_RS14750"
                     /old_locus_tag="MUA45_14745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000042122.1"
                     /translation="MSKNNHTNHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            complement(4420..4599)
                     /locus_tag="MUA45_RS14755"
                     /old_locus_tag="MUA45_14750"
     CDS             complement(4420..4599)
                     /locus_tag="MUA45_RS14755"
                     /old_locus_tag="MUA45_14750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000042035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000042035.1"
                     /translation="MSKNLDKGLVISTVLNVILCMLLILTMRVESLTVSVILAIITGVN
                     AVYLVAKVLKQKKT"
                     /name="hypothetical protein"
     Typing          complement(3258..4196)
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.574"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(293..1530)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tacagttaaa ctttctactc gcatagttaa tattaaaagc atgcaaagaa taacgtttaa
       61 aactgttgat ataaccaatc ccttatctaa atttttactc atcttcttca actcctttta
      121 ttgctttatt ccaatttcct tattggtcgg aacctacagg gctttatgtg ttgttgagtt
      181 ggtactttct tgggattaat cccaattcaa gtccaaccaa ctcgctaaca agttagctaa
      241 cacatagccc attccaacca ataagttttc tcggcataaa tgcatgttct ataagtgcat
      301 acctctatct cgtttttgat tcttttgttg ttcttgttgc tgttcctgtt ctgaatataa
      361 ttctggattc atttttttat ctaagtttcc tgctaaacca tttagttttg gttcatcttc
      421 tgttaactta ttaactcttt ccgcaaaggt atttcttcct aaaactcgtt ctaactcttt
      481 tagtaagatt tttaaaagct ttaacgctat ttctatattc tctttaagtg gctttgcatt
      541 ttcgtaaagt tggttaaaat tatcgtctgc gttttcaata cgctcaactg ctttatttaa
      601 taaatcatct ttctctcgta tttccttatc tttatcatct aaggctctac cagactttat
      661 atactcgtaa tcttccgaaa tatcttgagc agcttttatc tgtttctgaa attcattgaa
      721 atctttttgg cttattacaa catttccagt ttcttgtatt tctttgctaa ataaaccacc
      781 tactttttca gtttcttgct catacggaac atttataggc tttttaagcg tatttaacga
      841 tttttggtac tcttgcatta atttatcgtt cttttgcttt atatggtctg ttttttggct
      901 ctcacgttca tattcttgct tatgatattc tgttttttgt ttatactgac ttatttgctc
      961 atgtttagca tttgttactt gtcttgattg cccacgttct aaatcatatc ctcgttgttt
     1021 aacatgctca ttaaatctat cttgaaacgc tgttaaagct tttttattac ctacaacttc
     1081 tttagcactt aaacgaccat catcagttat tggaacaacg ccataatgca tatgtggtgt
     1141 tttttcgtcc atgtgaactg ttgcatataa taaattatct ttaccgtatt cttgttctaa
     1201 aaactcttta gcatattcaa aaaactgctt tgtatcttct ggcgtttgat tatcaaagaa
     1261 atcattgtct gatgtaatta aaccatcaat gtgtttaatc gcgtctgttc taatttttct
     1321 tttgcctgta taattctgtt cgattttttc atcaatcaag ttattaaaat tctgtttatt
     1381 agcatttacc aaatcataat ttaagtaagt tttactatgg tctatatctt cattttcata
     1441 attattattt tctctttgaa catgtttttg tatgcccgtt gtatttgttc cagatttaac
     1501 ttttgaaact ctaacaatgg aataagacat ataaaaatca ctcctaagca caaaggtttc
     1561 atgtgtattt aatagtttaa gtctaaacac tagacttatt ttacaataag tcgttaatac
     1621 gtgtgctctg cgaggcttaa acctgttttt gctaacgcaa aaaatgagtg gcaaaatgct
     1681 agccactcat agttctaaac caaaatataa tataactatt caaactgctt ttcagaacgt
     1741 ttaaatacaa taatcgtcaa aagacaacat aaaataataa ggatagccat ggctacaaga
     1801 atattactat acactccaga agaataattt ataaattcca gaactagttt acgattaatc
     1861 aattgtagtg acaataaacc tcctacaatt gctatacctg ttccctctga taaaaaactt
     1921 gtgaaattta gcaaactcat tccagaagca acttcttctt cagaaagact acttgatact
     1981 atttttgata taactgtttt agtaaaagat aatccgccca taacaaatat aaacataaaa
     2041 gtagtcaacc acatactaaa ctcaacaaaa aatgcaatag ttaaaaaact tatagagata
     2101 gacaatgatc ctaaaataaa aacaaataat gatccttttc tatccactaa aaaaccacca
     2161 aaataaccaa aaacaataac actcatggtt ccaggaaaaa taacactatt acctattgtc
     2221 gctacattta catgataaat agttttcatc atataaggca ccattgatat aaaaccagct
     2281 actatagaaa atattagccc accagaaaac aaaccaagca taaacggaat gtttttccct
     2341 agtttaggat taataaaagg gttagaaact cttgaaatat gtttaataaa aatcacaaaa
     2401 aagattgtga agagtattaa aaaagtccaa ttataatttg tcgtaaataa cataaaacat
     2461 ataatactta tagacattaa aacaatacct acgatatcta atgtattttt tgttgattta
     2521 ccaggtacca ttactttaat aagaaaaggt atagttacta ttgtaatcat aggaagtata
     2581 agtaggtaag accaatgaat ataatgtgct attattcccc ctattgaagg acctaaccct
     2641 tcacctaaag ctacaattga tcctataaaa ccaaaggctt tgccttgttt ttttcttgta
     2701 atatttctag ctacaaccac cataatcagt gaagggaatg cagcagatcc tactccttgt
     2761 actaacctac caaaaatcaa aataaaaaag tgattgtgac caataaaagc aatcaatgaa
     2821 ccaagacagc tcaaactaat accaataatt aacaattttt ttatatttat ataatcagat
     2881 aattttccat atactgctgt tcctatcgaa aaagttaaca tatatgcagt gtttacccag
     2941 tttgtaattc caggagtagt attaaaatga tttgcaatat caggtaaaga aacatttaaa
     3001 accatttcat ttaatacact aaaaaatgaa agaatacaaa gccaaaataa aacgctataa
     3061 aacaaacctt taaatttttt atataaacta aacaatttta cctctttact tgaggtgact
     3121 aaagtttata ggggtaaatt attctttcac ctcatataaa ttccccaaat ttttaaatag
     3181 acacttcata aaaaaatcct cctaaattag aatagtttaa atatatcatt tttgttcagt
     3241 aatattaata tgtacactat ttccaaaatt taaattcatg ttgccaaaaa tcgatttgtt
     3301 tttgcaattg tttttcgttc gcttttaaag tcgatttcat taagtccgtt aaatcgactg
     3361 gcgaaatttc ttttatcaaa ttcttatatt ttgttctaga atttctgtga agctttcccc
     3421 attcttcttc atcactcaat aacataaaaa ctattgctct atccgcagtg cgttggatag
     3481 ttttccaatc tggttgcaag atatgtaaat cactaaagca atcattccag taatccacca
     3541 tatctctttt aagttcgatt tctacacgcc ataaatgttc agacataact tcagcatctg
     3601 cattatcttt acgttcttgc tttttattat aaattctaat aaatctatta ctatctctca
     3661 cgccaaaata ttttgtttct ggcttaccat tacgaccata aaaaatagtt ttcttaactg
     3721 ctttatcaga cattgcatag tagtcactca aatcatcttc aaaatcaaag gctaaatcta
     3781 atcttgtaaa accgtcatct tccatgtagc ttattatatt ttgttttaac caaatcattt
     3841 catctcgtgt aagtttgttt ggattaaatt caatacgcat attacgtcta tcccaactat
     3901 ctgctttcac tttgtcatat tcaatataaa ctttttcttg aagtgcttta gctttaaact
     3961 ttgtttgaag aatatcccaa agtcttattt ggggctctac actcataaat ttagaaaggg
     4021 cttgagcgtt gtctcggttg agatttccaa cgatcgtcat tgcatcaaaa cttaattttg
     4081 gatcagatat gcacacagta tgtgcgtcca accggctatt agagtagccg gttttagaaa
     4141 aattgtctaa atcgtgattt tctaagtgat ttgaatgatt tgtatgatta tttttactca
     4201 taaaaaatcg actccttaat ttaagaagtc gctcacccga atatatatct tgaagaataa
     4261 acttatatcg tttaatatct agatatacaa aatataaaaa aacaacttag tgttttttct
     4321 ttgggtaagt cgctatcaca aactttggtc agggagtgag cgacttcttt tttatttgtt
     4381 tattaatata acactatcaa aagacttggt ctaatcagat caggtctttt tctgttttaa
     4441 aaccttagca actaaatata ctgcatttac tccagtgatt attgctaata taactgatac
     4501 agttaaactt tctactcgca tagttaatat taaaagcatg caaagaataa cgtttaaaac
     4561 tgttgatata accaatccct tatctaaatt tttactcatc ttcttcaact ccttttattg
     4621 ctttattcca atttccttat tggtcggaac ctacagggct ttatgtgttg ttgagttggt
     4681 actttcttgg gattaatccc aattcaagtc caaccaactc gctaacaagt tagctaacac
//
