LOCUS       NZ_CP094756             4729 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6242 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP094756
VERSION     NZ_CP094756.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923344
            Assembly: GCF_025559125.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4729)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4729)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 544x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:22:35
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,842
            CDSs (total)                      :: 2,760
            Genes (coding)                    :: 2,664
            CDSs (with protein)               :: 2,664
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 55 of 96
            Pseudo Genes (incomplete)         :: 30 of 96
            Pseudo Genes (internal stop)      :: 28 of 96
            Pseudo Genes (multiple problems)  :: 15 of 96
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094756.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4729
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6242"
                     /isolation_source="nasal swab"
                     /host="Camel"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed2"
                     /geo_loc_name="Kenya:Marsabit"
                     /collection_date="2014"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            complement(join(4690..4729,1..140))
                     /locus_tag="MUA32_RS14005"
                     /old_locus_tag="MUA32_14000"
     CDS             complement(join(4690..4729,1..140))
                     /locus_tag="MUA32_RS14005"
                     /old_locus_tag="MUA32_14000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000042035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_262544966.1"
                     /translation="MSKNLDKGLVISTVLNVILCMLLILTMRVESLTVSVILAIITGVN
                     AVQESTNSTTHKAL"
                     /name="hypothetical protein"
     gene            complement(327..1568)
                     /gene="mobV"
                     /locus_tag="MUA32_RS14010"
                     /old_locus_tag="MUA32_14005"
     CDS             complement(327..1568)
                     /gene="mobV"
                     /locus_tag="MUA32_RS14010"
                     /old_locus_tag="MUA32_14005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            complement(1755..3134)
                     /gene="tet(K)"
                     /locus_tag="MUA32_RS14015"
                     /old_locus_tag="MUA32_14010"
     ARG             complement(1759..3134)
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="99.78"
                     /coverage="100.0"
     gene            complement(3296..4240)
                     /locus_tag="MUA32_RS14020"
                     /old_locus_tag="MUA32_14015"
     CDS             complement(3296..4240)
                     /locus_tag="MUA32_RS14020"
                     /old_locus_tag="MUA32_14015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000042121.1"
                     /translation="MSKNNHTNHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            complement(4459..4638)
                     /locus_tag="MUA32_RS14025"
                     /old_locus_tag="MUA32_14020"
     CDS             complement(4459..4638)
                     /locus_tag="MUA32_RS14025"
                     /old_locus_tag="MUA32_14020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000042035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000042035.1"
                     /translation="MSKNLDKGLVISTVLNVILCMLLILTMRVESLTVSVILAIITGVN
                     AVYLVAKVLKQKKT"
                     /name="hypothetical protein"
     Typing          complement(3297..4240)
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          complement(331..1568)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 actgcattta ctccagtgat tattgctaat ataactgata cagttaaact ttctactcgc
       61 atagttaata ttaaaagcat gcaaagaata acgtttaaaa ctgttgatat aaccaatccc
      121 ttatctaaat ttttactcat cttcttcaac tccttttatt gctttattcc aatttcctta
      181 ttggtcggaa cctacagggc tttatgtgtt gttgagttgg tactttcttg ggattaatcc
      241 caattcaagt ccaaccaact cgctaacaag ttagctaaca catagcccat tccaaccaat
      301 aagttttctc ggcataaatg catgttctat aagtgcatac ctctatctcg tttttgattc
      361 ttttgttgtt cttgttgctg ttcctgttct gaatataatt ctggattcat ttttttatct
      421 aagtttcctg ctaaaccatt tagttttggt tcatcttctg ttaacttatt aactctttcc
      481 gcaaaggtat ttcttcctaa aactcgttct aactctttta gtaagatttt taaaagcttt
      541 aacgctattt ctatattctc tttaagtggc tttgcatttt cgtaaagttg gttaaaatta
      601 tcgtctgcgt tttcaatacg ctcaactgct ttatttaata aatcatcttt ctctcgtatt
      661 tccttatctt tatcatctaa ggctctacca gactttatat actcgtaatc ttccgaaata
      721 tcttgagcag cttttatctg tttctgaaat tcattgaaat ctttttggct tattacaaca
      781 tttccagttt cttgtatttc tttgctaaat aaaccaccta ctttttcagt ttcttgctca
      841 tacggaacat ttataggctt tttaagcgta tttaacgatt tttggtactc ttgcattaat
      901 ttatcgttct tttgctttat atggtctgtt ttttggctct cacgttcata ttcttgctta
      961 tgatattctg ttttttgttt atactgactt atttgctcat gtttagcatt tgttacttgt
     1021 cttgattgcc cacgttctaa atcatatcct cgttgtttaa catgctcatt aaatctatct
     1081 tgaaacgctg ttaaagcttt tttattacct acaacttctt tagcacttaa acgaccatca
     1141 tcagttattg gaacaacgcc ataatgcata tgtggtgttt tttcgtccat gtgaactgtt
     1201 gcatataata aattatcttt accgtattct tgttctaaaa actctttagc atattcaaaa
     1261 aactgctttg tatcttctgg cgtttgatta tcaaagaaat cattgtctga tgtaattaaa
     1321 ccatcaatgt gtttaatcgc gtctgttcta atttttcttt tgcctgtata attctgttcg
     1381 attttttcat caatcaagtt attaaaattc tgtttattag catttaccaa atcataattt
     1441 aagtaagttt tactatggtc tatatcttca ttttcataat tattattttc tctttgaaca
     1501 tgtttttgta tgcccgttgt atttgttcca gatttaactt ttgaaactct aacaatggaa
     1561 taagacatat aaaaatcact cctaagcaca aaggtttcat gtgtatttaa tagtttaagt
     1621 ctaatacact agacttattt tacaataagt cgttaatacg tgtgctctgc gaggcttaaa
     1681 cctgtttttg ctaacgcaaa aaatgagtgg caaaatgcta gccactcata gttctaaacc
     1741 aaaatataat ataactattc aaactgcttt tcagaacgtt taaatacaat aatcgtcaaa
     1801 agacaacata aaataataag gatagccatg gctacaagaa tattactata cactccagaa
     1861 gaataattta taaattccag aactagttta cgattaatca attgtagtga caataaacct
     1921 cctacaattg ctatacctgt tccctctgat aaaaaacttg tgaaatttag caaactcatt
     1981 ccagaagcaa cttcttcttc agaaagacta cttgatacta tttttgatat aactgtttta
     2041 gtaaaagata atccgcccat aacaaatata aacataaaag tagtcaacca catactaaac
     2101 tcaacaaaaa atgcaatagt taaaaaactt atagagatag acaatgatcc taaaataaaa
     2161 acaaataatg atccttttct atccactaaa aaaccaccaa aataaccaaa aacaataaca
     2221 ctcatggttc caggaaaaat aacactatta cctattgtcg ctacatttac atgataaata
     2281 gttttcatca tataaggcac cattgatata aaaccagcta ctatagaaaa tattagccca
     2341 ccagaaaaaa aaccaagcat aaacggaatg tttttcccta gtttaggatt aataaaaggg
     2401 ttagaaactc ttgaaatatg tttaataaaa atcacaaaaa agattgtgaa gagtattaaa
     2461 aaagtccaat tataatttgt cgtaaataac ataaaacata taatacttat agacattaaa
     2521 acaataccta cgatatctaa tgtatttttt gttgatttac caggtaccat tactttaata
     2581 agaaaaggta tagttactat tgtaatcata ggaagtataa gtaggtaaga ccaatgaata
     2641 taatgtgcta ttattccccc tattgaagga cctaaccctt cacctaaagc tacaattgat
     2701 cctataaaac caaaggcttt gccttgtttt tttcttgtaa tatttctagc tacaaccacc
     2761 ataatcagtg aagggaatgc agcagatcct actccttgta ctaacctacc aaaaatcaaa
     2821 ataaaaaagt gattgtgacc aataaaagca atcaatgaac caagacagct caaactaata
     2881 ccaataatta acaatttttt tatatttata taatcagata attttccata tactgctgtt
     2941 cctatcgaaa aagttaacat atatgcagtg tttacccagt ttgtaattcc aggagtagta
     3001 ttaaaatgat ttgcaatatc aggtaaagaa acatttaaaa ccatttcatt taatacacta
     3061 aaaaatgaaa gaatacaaag ccaaaataaa acgctataaa acaaaccttt aaatttttta
     3121 tataaactaa acaattttac ctctttactt gaggtgacta aagtttatag gggtaaatta
     3181 ttctttcacc tcatataaat tccccaaatt tttaaataga cacttcataa aaaaatcctc
     3241 ctaaattaga atagtttaaa tatatcattt ttgttcagta atattaatat gtacactatt
     3301 tccaaaattt aaattcatgt tgccaaaaat cgatttgttt ttgcaattgt ttttcgttcg
     3361 cttttaaagt cgatttcatt aagtccgtta aatcgactgg cgaaatttct tttatcaaat
     3421 tcttatattt tgttctagaa tttctgtgaa gctttcccca ttcttcttca tcactcaata
     3481 acataaaaac tattgctcta tccgcagtgc gttggatagt tttccaatct ggttgcaaga
     3541 tatgtaaatc actaaagcaa tcattccagt aatccaccat atctctttta agttcgattt
     3601 ctacacgcca taaatgttca gacataactt cagcatctgc attatcttta cgttcttgct
     3661 ttttattata aattctaata aatctattac tatctctcac gccaaaatat tttgtttctg
     3721 gcttaccatt acgaccataa aaaatagttt tcttaactgc tttatcagac attgcatagt
     3781 agtcactcaa atcatcttca aaatcaaagg ctaaatctaa tcttgtaaaa ccgtcatctt
     3841 ccatatagtc aataatgttt tgttttaacc aaatcatttc atctcgtgta agtttgtttg
     3901 gattaaattc aatacgcata ttacgtctgt cccaactatc tgctttcact ttgtcatatt
     3961 caatataaac tttttcttga agtgctttag ctttaaactt tgtttgaaga atatcccaaa
     4021 gtcttatttg gggctctaca ctcataaatt tagaaagggc ttgagcgttg tctcggttga
     4081 gatttccaac gatcgtcatt gcatcaaaac ttaattttgg atcagatatg cacacagtat
     4141 gtgcgtccaa ccggctatta gagtagccgg ttttagaaaa attgtctaaa tcgtgatttt
     4201 ctaagtgatt tgaatgattt gtatgattat ttttactcat aaaaaatcga ctccttaatt
     4261 taagaagtcg ctcacccgaa tatatatctt gaagaataaa cttatatcgt ttaatatcta
     4321 gatatacaaa atataaaaaa acaacttagt gttttttctt tgggtaagtc gctatcacaa
     4381 actttggtca gggagtgagc gacttctttt ttatttgttt attaatataa cactatcaaa
     4441 agacttggtc taatcagatc aggtcttttt ctgttttaaa accttagcaa ctaaatatac
     4501 tgcatttact ccagtgatta ttgctaatat aactgataca gttaaacttt ctactcgcat
     4561 agttaatatt aaaagcatgc aaagaataac gtttaaaact gttgatataa ccaatccctt
     4621 atctaaattt ttactcatct tcttcaactc cttttattgc tttattccaa tttccttatt
     4681 ggtcggaacc tacagggctt tatgtgttgt tgagttggta ctttcttgg
//
