LOCUS       NZ_CP094754             4504 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6243 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP094754
VERSION     NZ_CP094754.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923345
            Assembly: GCF_025559085.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4504)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4504)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 690x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:19:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,842
            CDSs (total)                      :: 2,760
            Genes (coding)                    :: 2,664
            CDSs (with protein)               :: 2,664
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 96
            CDSs (without protein)            :: 96
            Pseudo Genes (ambiguous residues) :: 0 of 96
            Pseudo Genes (frameshifted)       :: 55 of 96
            Pseudo Genes (incomplete)         :: 30 of 96
            Pseudo Genes (internal stop)      :: 28 of 96
            Pseudo Genes (multiple problems)  :: 15 of 96
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094754.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4504
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6243"
                     /isolation_source="nasal swab"
                     /host="Camel"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed3"
                     /geo_loc_name="Kenya:Marsabit"
                     /collection_date="2014"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     ARG             2..1395
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="major facilitator superfamily (MFS) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="tetracycline antibiotic"
                     /identity="99.56"
                     /coverage="101.09"
     ARG             17..1392
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="99.78"
                     /coverage="100.0"
     gene            1582..2823
                     /gene="mobV"
                     /locus_tag="MUA86_RS14200"
                     /old_locus_tag="MUA86_14190"
     CDS             1582..2823
                     /gene="mobV"
                     /locus_tag="MUA86_RS14200"
                     /old_locus_tag="MUA86_14190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            3010..3189
                     /locus_tag="MUA86_RS14205"
                     /old_locus_tag="MUA86_14195"
     CDS             3010..3189
                     /locus_tag="MUA86_RS14205"
                     /old_locus_tag="MUA86_14195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000042035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000042035.1"
                     /translation="MSKNLDKGLVISTVLNVILCMLLILTMRVESLTVSVILAIITGVN
                     AVYLVAKVLKQKKT"
                     /name="hypothetical protein"
     gene            3408..4352
                     /locus_tag="MUA86_RS14210"
                     /old_locus_tag="MUA86_14200"
     CDS             3408..4352
                     /locus_tag="MUA86_RS14210"
                     /old_locus_tag="MUA86_14200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000042121.1"
                     /translation="MSKNNHTNHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     Typing          3409..4352
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          1583..2820
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 agtaaagagg taaaattgtt tagtttatat aaaaaattta aaggtttgtt ttatagcgtt
       61 ttattttggc tttgtattct ttcatttttt agtgtattaa atgaaatggt tttaaatgtt
      121 tctttacctg atattgcaaa tcattttaat actactcctg gaattacaaa ctgggtaaac
      181 actgcatata tgttaacttt ttcgatagga acagcagtat atggaaaatt atctgattat
      241 ataaatataa aaaaattgtt aattattggt attagtttga gctgtcttgg ttcattgatt
      301 gcttttattg gtcacaatca cttttttatt ttgatttttg gtaggttagt acaaggagta
      361 ggatctgctg cattcccttc actgattatg gtggttgtag ctagaaatat tacaagaaaa
      421 aaacaaggca aagcctttgg ttttatagga tcaattgtag ctttaggtga agggttaggt
      481 ccttcaatag ggggaataat agcacattat attcattggt cttacctact tatacttcct
      541 atgattacaa tagtaactat accttttctt attaaagtaa tggtacctgg taaatcaaca
      601 aaaaatacat tagatatcgt aggtattgtt ttaatgtcta taagtattat atgttttatg
      661 ttatttacga caaattataa ttggactttt ttaatactct tcacaatctt ttttgtgatt
      721 tttattaaac atatttcaag agtttctaac ccttttatta atcctaaact agggaaaaac
      781 attccgttta tgcttggttt tttttctggt gggctaatat tttctatagt agctggtttt
      841 atatcaatgg tgccttatat gatgaaaact atttatcatg taaatgtagc gacaataggt
      901 aatagtgtta tttttcctgg aaccatgagt gttattgttt ttggttattt tggtggtttt
      961 ttagtggata gaaaaggatc attatttgtt tttattttag gatcattgtc tatctctata
     1021 agttttttaa ctattgcatt ttttgttgag tttagtatgt ggttgactac ttttatgttt
     1081 atatttgtta tgggcggatt atcttttact aaaacagtta tatcaaaaat agtatcaagt
     1141 agtctttctg aagaagaagt tgcttctgga atgagtttgc taaatttcac aagtttttta
     1201 tcagagggaa caggtatagc aattgtagga ggtttattgt cactacaatt gattaatcgt
     1261 aaactagttc tggaatttat aaattattct tctggagtgt atagtaatat tcttgtagcc
     1321 atggctatcc ttattatttt atgttgtctt ttgacgatta ttgtatttaa acgttctgaa
     1381 aagcagtttg aatagttata ttatattttg gtttagaact atgagtggct agcattttgc
     1441 cactcatttt ttgcgttagc aaaaacaggt ttaagcctcg cagagcacac gtattaacga
     1501 cttattgtaa aataagtcta gtgtattaga cttaaactat taaatacaca tgaaaccttt
     1561 gtgcttagga gtgattttta tatgtcttat tccattgtta gagtttcaaa agttaaatct
     1621 ggaacaaata caacgggcat acaaaaacat gttcaaagag aaaataataa ttatgaaaat
     1681 gaagatatag accatagtaa aacttactta aattatgatt tggtaaatgc taataaacag
     1741 aattttaata acttgattga tgaaaaaatc gaacagaatt atacaggcaa aagaaaaatt
     1801 agaacagacg cgattaaaca cattgatggt ttaattacat cagacaatga tttctttgat
     1861 aatcaaacgc cagaagatac aaagcagttt tttgaatatg ctaaagagtt tttagaacaa
     1921 gaatacggta aagataattt attatatgca acagttcaca tggacgaaaa aacaccacat
     1981 atgcattatg gcgttgttcc aataactgat gatggtcgtt taagtgctaa agaagttgta
     2041 ggtaataaaa aagctttaac agcgtttcaa gatagattta atgagcatgt taaacaacga
     2101 ggatatgatt tagaacgtgg gcaatcaaga caagtaacaa atgctaaaca tgagcaaata
     2161 agtcagtata aacaaaaaac agaatatcat aagcaagaat atgaacgtga gagccaaaaa
     2221 acagaccata taaagcaaaa gaacgataaa ttaatgcaag agtaccaaaa atcgttaaat
     2281 acgcttaaaa agcctataaa tgttccgtat gagcaagaaa ctgaaaaagt aggtggttta
     2341 tttagcaaag aaatacaaga aactggaaat gttgtaataa gccaaaaaga tttcaatgaa
     2401 tttcagaaac agataaaagc tgctcaagat atttcggaag attacgagta tataaagtct
     2461 ggtagagcct tagatgataa agataaggaa atacgagaga aagatgattt attaaataaa
     2521 gcagttgagc gtattgaaaa cgcagacgat aattttaacc aactttacga aaatgcaaag
     2581 ccacttaaag agaatataga aatagcgtta aagcttttaa aaatcttact aaaagagtta
     2641 gaacgagttt taggaagaaa tacctttgcg gaaagagtta ataagttaac agaagatgaa
     2701 ccaaaactaa atggtttagc aggaaactta gataaaaaaa tgaatccaga attatattca
     2761 gaacaggaac agcaacaaga acaacaaaag aatcaaaaac gagatagagg tatgcactta
     2821 tagaacatgc atttatgccg agaaaactta ttggttggaa tgggctatgt gttagctaac
     2881 ttgttagcga gttggttgga cttgaattgg gattaatccc aagaaagtac caactcaaca
     2941 acacataaag ccctgtaggt tccgaccaat aaggaaattg gaataaagca ataaaaggag
     3001 ttgaagaaga tgagtaaaaa tttagataag ggattggtta tatcaacagt tttaaacgtt
     3061 attctttgca tgcttttaat attaactatg cgagtagaaa gtttaactgt atcagttata
     3121 ttagcaataa tcactggagt aaatgcagta tatttagttg ctaaggtttt aaaacagaaa
     3181 aagacctgat ctgattagac caagtctttt gatagtgtta tattaataaa caaataaaaa
     3241 agaagtcgct cactccctga ccaaagtttg tgatagcgac ttacccaaag aaaaaacact
     3301 aagttgtttt tttatatttt gtatatctag atattaaacg atataagttt attcttcaag
     3361 atatatattc gggtgagcga cttcttaaat taaggagtcg attttttatg agtaaaaata
     3421 atcatacaaa tcattcaaat cacttagaaa atcacgattt agacaatttt tctaaaaccg
     3481 gctactctaa tagccggttg gacgcacata ctgtgtgcat atctgatcca aaattaagtt
     3541 ttgatgcaat gacgatcgtt ggaaatctca accgagacaa cgctcaagcc ctttctaaat
     3601 ttatgagtgt agagccccaa ataagacttt gggatattct tcaaacaaag tttaaagcta
     3661 aagcacttca agaaaaagtt tatattgaat atgacaaagt gaaagcagat agttgggaca
     3721 gacgtaatat gcgtattgaa tttaatccaa acaaacttac acgagatgaa atgatttggt
     3781 taaaacaaaa cattattgac tatatggaag atgacggttt tacaagatta gatttagcct
     3841 ttgattttga agatgatttg agtgactact atgcaatgtc tgataaagca gttaagaaaa
     3901 ctatttttta tggtcgtaat ggtaagccag aaacaaaata ttttggcgtg agagatagta
     3961 atagatttat tagaatttat aataaaaagc aagaacgtaa agataatgca gatgctgaag
     4021 ttatgtctga acatttatgg cgtgtagaaa tcgaacttaa aagagatatg gtggattact
     4081 ggaatgattg ctttagtgat ttacatatct tgcaaccaga ttggaaaact atccaacgca
     4141 ctgcggatag agcaatagtt tttatgttat tgagtgatga agaagaatgg ggaaagcttc
     4201 acagaaattc tagaacaaaa tataagaatt tgataaaaga aatttcgcca gtcgatttaa
     4261 cggacttaat gaaatcgact ttaaaagcga acgaaaaaca attgcaaaaa caaatcgatt
     4321 tttggcaaca tgaatttaaa ttttggaaat agtgtacata ttaatattac tgaacaaaaa
     4381 tgatatattt aaactattct aatttaggag gattttttta tgaagtgtct atttaaaaat
     4441 ttggggaatt tatatgaggt gaaagaataa tttaccccta taaactttag tcacctcaag
     4501 taaa
//
