LOCUS       NZ_CP094749             4443 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus aureus strain IVB6249 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP094749
VERSION     NZ_CP094749.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923347
            Assembly: GCF_025559005.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4443)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4443)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 702x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:27:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,883
            CDSs (total)                      :: 2,802
            Genes (coding)                    :: 2,687
            CDSs (with protein)               :: 2,687
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 57 of 115
            Pseudo Genes (incomplete)         :: 44 of 115
            Pseudo Genes (internal stop)      :: 35 of 115
            Pseudo Genes (multiple problems)  :: 17 of 115
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094749.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4443
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="IVB6249"
                     /isolation_source="Ear swab"
                     /host="Camel"
                     /db_xref="taxon:1280"
                     /plasmid="unnamed3"
                     /geo_loc_name="Kenya:Samburu"
                     /collection_date="2014"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     gene            join(4401..4443,1..906)
                     /locus_tag="MUA08_RS14400"
                     /old_locus_tag="MUA08_14390"
                     /pseudo=""
     CDS             join(4401..4443,1..906)
                     /locus_tag="MUA08_RS14400"
                     /old_locus_tag="MUA08_14390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /name="replication initiation factor domain-containing
                     protein"
     gene            1068..2447
                     /gene="tet(K)"
                     /locus_tag="MUA08_RS14405"
                     /old_locus_tag="MUA08_14395"
     ARG             1069..2444
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="100.0"
     gene            2633..3874
                     /gene="mobV"
                     /locus_tag="MUA08_RS14410"
                     /old_locus_tag="MUA08_14400"
     CDS             2633..3874
                     /gene="mobV"
                     /locus_tag="MUA08_RS14410"
                     /old_locus_tag="MUA08_14400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     Typing          2..906
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.89"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          2634..3871
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaaaatcacg atttagacaa tttttctaaa accggctact ctaatagccg gttggacgca
       61 catactgtgt gcatatctga tccaaaatta agttttgatg caatgacgat cgttggaaat
      121 ctcaaccgag acaacgctca agccctttct aaatttatga gtgtagagcc ccaaataaga
      181 ctttgggata ttcttcaaac aaagtttaaa gctaaagcac ttcaagaaaa agtttatatt
      241 gaatatgaca aagtgaaagc agatagttgg gatagacgta atatgcgtat tgaatttaat
      301 ccaaacaaac ttacacgaga tgaaatgatt tggttaaaac aaaatataat aagctacatg
      361 gaagatgacg gttttacaag attagattta gcctttgatt ttgaagatga tttgagtgac
      421 tactatgcaa tgtctgataa agcagttaag aaaactattt tttatggtcg taatggtaag
      481 ccagaaacaa aatattttgg cgtgagagat agtaatagat ttattagaat ttataataaa
      541 aagcaagaac gtaaagataa tgcagatgct gaagttatgt ctgaacattt atggcgtgta
      601 gaaatcgaac ttaaaagaga tatggtggat tactggaatg attgctttag tgatttacat
      661 atcttgcaac cagattggaa aactatccaa cgcactgcgg atagagcaat agtttttatg
      721 ttattgagtg atgaagaaga atggggaaag ctccacagaa attctagaac aaaatataag
      781 aatttgataa aagaaatttc gccagtcgat ttaacggact taatgaaatc gactttaaaa
      841 gcgaacgaaa aacaattgca aaaacaaatc gatttttggc aacatgaatt taaattttgg
      901 aaatagtgta catattaata ttactgaaca aaaatgatat atttaaacta ttctaattta
      961 ggaggatttt tttatgaagt gtctatttaa aaatttgggg aatttatatg aggtgaaaga
     1021 ataatttacc cctataaact ttagtcacct caagtaaaga ggtaaaattg tttagtttat
     1081 ataaaaaatt taaaggtttg ttttatagcg ttttattttg gctttgtatt ctttcatttt
     1141 ttagtgtatt aaatgaaatg gttttaaatg tttctttacc tgatattgca aatcatttta
     1201 atactactcc tggaattaca aactgggtaa acactgcata tatgttaact ttttcgatag
     1261 gaacagcagt atatggaaaa ttatctgatt atataaatat aaaaaaattg ttaattattg
     1321 gtattagttt gagctgtctt ggttcattga ttgcttttat tggtcacaat cactttttta
     1381 ttttgatttt tggtaggtta gtacaaggag taggatctgc tgcattccct tcactgatta
     1441 tggtggttgt agctagaaat attacaagaa aaaaacaagg caaagccttt ggttttatag
     1501 gatcaattgt agctttaggt gaagggttag gtccttcaat agggggaata atagcacatt
     1561 atattcattg gtcttaccta cttatacttc ctatgattac aatagtaact ataccttttc
     1621 ttattaaagt aatggtacct ggtaaatcaa caaaaaatac attagatatc gtaggtattg
     1681 ttttaatgtc tataagtatt atatgtttta tgttatttac gacaaattat aattggactt
     1741 ttttaatact cttcacaatc ttttttgtga tttttattaa acatatttca agagtttcta
     1801 acccttttat taatcctaaa ctagggaaaa acattccgtt tatgcttggt ttgttttctg
     1861 gtgggctaat attttctata gtagctggtt ttatatcaat ggtgccttat atgatgaaaa
     1921 ctatttatca tgtaaatgta gcgacaatag gtaatagtgt tatttttcct ggaaccatga
     1981 gtgttattgt ttttggttat tttggtggtt ttttagtgga tagaaaagga tcattatttg
     2041 tttttatttt aggatcattg tctatctcta taagtttttt aactattgca ttttttgttg
     2101 agtttagtat gtggttgact acttttatgt ttatatttgt tatgggcgga ttatctttta
     2161 ctaaaacagt tatatcaaaa atagtatcaa gtagtctttc tgaagaagaa gttgcttctg
     2221 gaatgagttt gctaaatttc acaagttttt tatcagaggg aacaggtata gcaattgtag
     2281 gaggtttatt gtcactacaa ttgattaatc gtaaactagt tctggaattt ataaattatt
     2341 cttctggagt gtatagtaat attcttgtag ccatggctat ccttattatt ttatgttgtc
     2401 ttttgacgat tattgtattt aaacgttctg aaaagcagtt tgaatagtta tattatattt
     2461 tggtttagaa ctatgagtgg ctagcatttt gccactcatt ttttgcgtta gcaaaaacag
     2521 gtttaagcct cgcagagcac acgtattaac gacttattaa aaataagtct agtgtgttag
     2581 acttaaacta ttaaatacac atgaaacctt tgtgcttagg agtgattttt atatgtctta
     2641 ttccattgtt agagtttcaa aagttaaatc tggaacaaat acaacgggca tacaaaaaca
     2701 tgttcaaaga gaaaataata attatgaaaa tgaagatata gaccatagta aaacttactt
     2761 aaattatgat ttggtaaatg ctaataaaca gaattttaat aacttgattg atgaaaaaat
     2821 cgaacagaat tatacaggca aaagaaaaat tagaacagac gcgattaaac acattgatgg
     2881 tttaattaca tcagacaatg atttctttga taatcaaacg ccagaagata caaagcagtt
     2941 ttttgaatat gctaaagagt ttttagaaca agaatacggt aaagataatt tattatatgc
     3001 aacagttcac atggacgaaa aaacaccaca tatgcattat ggcgttgttc caataactga
     3061 tgatggtcgt ttaagtgcta aagaagttgt aggtaataaa aaagctttaa cagcgtttca
     3121 agatagattt aatgagcatg ttaaacaacg aggatatgat ttagaacgtg ggcaatcaag
     3181 acaagtaaca aatgctaaac atgagcaaat aagtcagtat aaacaaaaaa cagaatatca
     3241 taagcaagaa tatgaacgtg agagccaaaa aacagaccat ataaagcaaa agaacgataa
     3301 attaatgcaa gagtaccaaa aatcgttaaa tacgcttaaa aagcctataa atgttccgta
     3361 tgagcaagaa actgaaaaag taggtggttt atttagcaaa gaaatacaag aaactggaaa
     3421 tgttgtaata agccaaaaag atttcaatga atttcagaaa cagataaaag ctgctcaaga
     3481 tatttcggaa gattacgagt atataaagtc tggtagagcc ttagatgata aagataagga
     3541 aatacgagag aaagatgatt tattaaataa agcagttgag cgtattgaaa acgcagacga
     3601 taattttaac caactttacg aaaatgcaaa gccacttaaa gagaatatag aaatagcgtt
     3661 aaagctttta aaaatcttac taaaagagtt agaacgagtt ttaggaagaa atacctttgc
     3721 ggaaagagtt aataagttaa cagaagatga accaaaacta aatggtttag caggaaactt
     3781 agataaaaaa atgaatccag aattatattc agaacaggaa cagcaacaag aacaacaaaa
     3841 gaatcaaaaa cgagatagag gtatgcactt atagaacatg catttatgcc gagaaaactt
     3901 attggttgga atgggctatg tgttagctaa cttgttagcg agttggttgg acttgaattg
     3961 ggattaatcc caagaaagta ccaactcaac aacacataaa gccctgtagg ttccgaccaa
     4021 taaggaaatt ggaataaagc aataaaagga gttgaagaaa tgaaattcag agaagccttt
     4081 gagaatttta taacaagtaa gtatgtactt ggtgttttag tagttttaac tgtttaccag
     4141 ataatacaaa tgcttaaata aaaaaagact tgatctgatt agaccaagtc ttttgatagt
     4201 gttatattaa taacaaaata aaaaggagtc gctcacgccc tgaccaaagt ttgtgaacga
     4261 catcattcaa agaaaaaaac actgagttat ttttataatc ttgtatattt agatattaaa
     4321 cgatatttaa atatacatca agatatatat ttgggtgagc gattccttaa acgaaattga
     4381 gattaaggag tcgatttttt atgtataaaa acaatcatgc aaatcattca aatcatttgg
     4441 aaa
//
