LOCUS       NZ_CP094716             4583 bp    DNA     circular CON 20-OCT-2023
DEFINITION  Staphylococcus pasteuri strain IVB6198 plasmid unnamed, complete
            sequence.
ACCESSION   NZ_CP094716
VERSION     NZ_CP094716.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26923373
            Assembly: GCF_025558385.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus pasteuri
  ORGANISM  Staphylococcus pasteuri
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 4583)
  AUTHORS   Akarsu,H., Liljander,A., Younan,M., Brodard,I., Glucks,I.,
            Labroussaa,F., Overesch,G., Kuhnert,P., Perreten,V., Drexler,J.F.,
            Corman,V.M., Falquet,L. and Jores,J.
  TITLE     Comparative Genomics of East African Camel-Associated
            Staphylococcaceae spp.: Diversity and Inheritance of Traits Involved
            in Host-Pathogen Interactions
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4583)
  AUTHORS   Akarsu,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2022) Institute of Veterinary Bacteriology,
            University of Bern, Langgassstrasse 122, Bern 3001, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Flye v. 2.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 346x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/20/2023 05:14:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,436
            CDSs (total)                      :: 2,350
            Genes (coding)                    :: 2,310
            CDSs (with protein)               :: 2,310
            Genes (RNA)                       :: 86
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 40
            CDSs (without protein)            :: 40
            Pseudo Genes (ambiguous residues) :: 0 of 40
            Pseudo Genes (frameshifted)       :: 12 of 40
            Pseudo Genes (incomplete)         :: 15 of 40
            Pseudo Genes (internal stop)      :: 16 of 40
            Pseudo Genes (multiple problems)  :: 2 of 40
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094716.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4583
                     /organism="Staphylococcus pasteuri"
                     /mol_type="genomic DNA"
                     /strain="IVB6198"
                     /isolation_source="milk"
                     /host="Camel"
                     /db_xref="taxon:45972"
                     /plasmid="unnamed"
                     /geo_loc_name="Somalia:Somaliland"
                     /collection_date="2013"
                     /collected_by="Joerg Jores, Anne Liljander, Mario Younan,
                     Jan Felix Drexler, Victor Max Corman, Ilona Glucks"
     ARG             4..233
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="major facilitator superfamily (MFS) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="tetracycline antibiotic"
                     /identity="100.0"
                     /coverage="16.56"
     ARG             3294..4582
                     /name="tet(K)"
                     /gene="tet(K)"
                     /gene_name="tetracycline efflux MFS transporter Tet(K)"
                     /tool="amrfinderplus"
                     /drug_class="TETRACYCLINE"
                     /identity="100.0"
                     /coverage="93.68"
     gene            419..1660
                     /gene="mobV"
                     /locus_tag="MUA61_RS12170"
                     /old_locus_tag="MUA61_12150"
     CDS             419..1660
                     /gene="mobV"
                     /locus_tag="MUA61_RS12170"
                     /old_locus_tag="MUA61_12150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010889940.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_000122374.1"
                     /translation="MSYSIVRVSKVKSGTNTTGIQKHVQRENNNYENEDIDHSKTYLNY
                     DLVNANKQNFNNLIDEKIEQNYTGKRKIRTDAIKHIDGLITSDNDFFDNQTPEDTKQFF
                     EYAKEFLEQEYGKDNLLYATVHMDEKTPHMHYGVVPITDDGRLSAKEVVGNKKALTAFQ
                     DRFNEHVKQRGYDLERGQSRQVTNAKHEQISQYKQKTEYHKQEYERESQKTDHIKQKND
                     KLMQEYQKSLNTLKKPINVPYEQETEKVGGLFSKEIQETGNVVISQKDFNEFQKQIKAA
                     QDISEDYEYIKSGRALDDKDKEIREKDDLLNKAVERIENADDNFNQLYENAKPLKENIE
                     IALKLLKILLKELERVLGRNTFAERVNKLTEDEPKLNGLAGNLDKKMNPELYSEQEQQQ
                     EQQKNQKRDRGMHL"
                     /name="mobV"
     gene            2187..3131
                     /locus_tag="MUA61_RS12175"
                     /old_locus_tag="MUA61_12155"
     CDS             2187..3131
                     /locus_tag="MUA61_RS12175"
                     /old_locus_tag="MUA61_12155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000277654.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003916 - DNA topoisomerase activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="WP_000277654.1"
                     /translation="MYKNNHANHSNHLENHDLDNFSKTGYSNSRLDAHTVCISDPKLSF
                     DAMTIVGNLNRDNAQALSKFMSVEPQIRLWDILQTKFKAKALQEKVYIEYDKVKADSWD
                     RRNMRIEFNPNKLTRDEMIWLKQNIISYMEDDGFTRLDLAFDFEDDLSDYYAMSDKAVK
                     KTIFYGRNGKPETKYFGVRDSNRFIRIYNKKQERKDNADAEVMSEHLWRVEIELKRDMV
                     DYWNDCFSDLHILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIKEISP
                     VDLTDLMKSTLKANEKQLQKQIDFWQHEFKFWK"
                     /name="replication initiation factor domain-containing
                     protein"
     ARG             3294..4582
                     /name="tet(45)"
                     /gene="tet(45)"
                     /gene_name="major facilitator superfamily (MFS) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="tetracycline antibiotic"
                     /identity="62.35"
                     /coverage="93.89"
     Typing          2188..3131
                     /name="rep_cluster_1118"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          420..1657
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cttctggaat gagtttgcta aatttcacaa gttttttatc agagggaaca ggtatagcaa
       61 ttgtaggagg tttattgtca ctacaattga ttaatcgtaa actagttctg gaatttataa
      121 attattcttc tggagtgtat agtaatattc ttgtagccat ggctatcctt attattttat
      181 gttgtctttt gacgattatt gtatttaaac gttctgaaaa gcagtttgaa tagttatatt
      241 atattttggt ttagaactat gagtggctag cattttgcca ctcatttttt gcgttagcaa
      301 aaacaggttt aagcctcgca gagcacacgt attaacgact tattaaaaat aagtctagta
      361 tgttagactt aaactattaa atacacatga aacctttgtg cttaggagtg atttttatat
      421 gtcttattcc attgttagag tttcaaaagt taaatctgga acaaatacaa cgggcataca
      481 aaaacatgtt caaagagaaa ataataatta tgaaaatgaa gatatagacc atagtaaaac
      541 ttacttaaat tatgatttgg taaatgctaa taaacagaat tttaataact tgattgatga
      601 aaaaatcgaa cagaattata caggcaaaag aaaaattaga acagacgcga ttaaacacat
      661 tgatggttta attacatcag acaatgattt ctttgataat caaacgccag aagatacaaa
      721 gcagtttttt gaatatgcta aagagttttt agaacaagaa tacggtaaag ataatttatt
      781 atatgcaaca gttcacatgg acgaaaaaac accacatatg cattatggcg ttgttccaat
      841 aactgatgat ggtcgtttaa gtgctaaaga agttgtaggt aataaaaaag ctttaacagc
      901 gtttcaagat agatttaatg agcatgttaa acaacgagga tatgatttag aacgtgggca
      961 atcaagacaa gtaacaaatg ctaaacatga gcaaataagt cagtataaac aaaaaacaga
     1021 atatcataag caagaatatg aacgtgagag ccaaaaaaca gaccatataa agcaaaagaa
     1081 cgataaatta atgcaagagt accaaaaatc gttaaatacg cttaaaaagc ctataaatgt
     1141 tccgtatgag caagaaactg aaaaagtagg tggtttattt agcaaagaaa tacaagaaac
     1201 tggaaatgtt gtaataagcc aaaaagattt caatgaattt cagaaacaga taaaagctgc
     1261 tcaagatatt tcggaagatt acgagtatat aaagtctggt agagccttag atgataaaga
     1321 taaggaaata cgagagaaag atgatttatt aaataaagca gttgagcgta ttgaaaacgc
     1381 agacgataat tttaaccaac tttacgaaaa tgcaaagcca cttaaagaga atatagaaat
     1441 agcgttaaag cttttaaaaa tcttactaaa agagttagaa cgagttttag gaagaaatac
     1501 ctttgcggaa agagttaata agttaacaga agatgaacca aaactaaatg gtttagcagg
     1561 aaacttagat aaaaaaatga atccagaatt atattcagaa caggaacagc aacaagaaca
     1621 acaaaagaat caaaaacgag atagaggtat gcacttatag aacatgcatt tatgccgaga
     1681 aaacttattg gttggaatgg gctatgtgtt agctaacttg ttagcgagtt ggttggactt
     1741 gaattgggat taatcccaag aaagtaccaa ctcaacaaca cataaagccc tgtaggttcc
     1801 gaccaataag gaaattggaa taaagcaata aaaggagttg aagaaatgaa attcagagaa
     1861 gcctttgaga attttataac aagtaagtat gtacttggtg ttttagtagt tttaactgtt
     1921 taccagataa tacaaatgct taaataaaaa aagacttgat ctgattagac caagtctttt
     1981 gatagtgtta tattaataac aaaataaaaa ggagtcgctc acgccctgac caaagtttgt
     2041 gaacgacatc attcaaagaa aaaaacactg agttgttttt ataatcttgt atatttagat
     2101 attaaacgat atttaaatat acatcaagat atatatttgg gtgagcgatt ccttaaacga
     2161 aattgagatt aaggagtcga ttttttatgt ataaaaacaa tcatgcaaat cattcaaatc
     2221 atttggaaaa tcacgattta gacaattttt ctaaaaccgg ctactctaat agccggttgg
     2281 acgcacatac tgtgtgcata tctgatccaa aattaagttt tgatgcaatg acgatcgttg
     2341 gaaatctcaa ccgagacaac gctcaagccc tttctaaatt tatgagtgta gagccccaaa
     2401 taagactttg ggatattctt caaacaaagt ttaaagctaa agcacttcaa gaaaaagttt
     2461 atattgaata tgacaaagtg aaagcagata gttgggatag acgtaatatg cgtattgaat
     2521 ttaatccaaa caaacttaca cgagatgaaa tgatttggtt aaaacaaaat ataataagct
     2581 acatggaaga tgacggtttt acaagattag atttagcctt tgattttgaa gatgatttga
     2641 gtgactacta tgcaatgtct gataaagcag ttaagaaaac tattttttat ggtcgtaatg
     2701 gtaagccaga aacaaaatat tttggcgtga gagatagtaa tagatttatt agaatttata
     2761 ataaaaagca agaacgtaaa gataatgcag atgctgaagt tatgtctgaa catttatggc
     2821 gtgtagaaat cgaacttaaa agagatatgg tggattactg gaatgattgc tttagtgatt
     2881 tacatatctt gcaaccagat tggaaaacta tccaacgcac tgcggataga gcaatagttt
     2941 ttatgttatt gagtgatgaa gaagaatggg gaaagcttca cagaaattct agaacaaaat
     3001 ataagaattt gataaaagaa atttcgccag tcgatttaac ggacttaatg aaatcgactt
     3061 taaaagcgaa cgaaaaacaa ttgcaaaaac aaatcgattt ttggcaacat gaatttaaat
     3121 tttggaaata gtgtacatat taatattact gaacaaaaat gatatattta aactattcta
     3181 atttaggagg atttttttat gaagtgtcta tttaaaaatt tggggaattt atatgaggtg
     3241 aaagaataat ttacccctat aaactttagt cacctcaagt aaagaggtaa aattgtttag
     3301 tttatataaa aaatttaaag gtttgtttta tagcgtttta ttttggcttt gtattctttc
     3361 attttttagt gtattaaatg aaatggtttt aaatgtttct ttacctgata ttgcaaatca
     3421 ttttaatact actcctggaa ttacaaactg ggtaaacact gcatatatgt taactttttc
     3481 gataggaaca gcagtatatg gaaaattatc tgattatata aatataaaaa aattgttaat
     3541 tattggtatt agtttgagct gtcttggttc attgattgct tttattggtc acaatcactt
     3601 ttttattttg atttttggta ggttagtaca aggagtagga tctgctgcat tcccttcact
     3661 gattatggtg gttgtagcta gaaatattac aagaaaaaaa caaggcaaag cctttggttt
     3721 tataggatca attgtagctt taggtgaagg gttaggtcct tcaatagggg gaataatagc
     3781 acattatatt cattggtctt acctacttat acttcctatg attacaatag taactatacc
     3841 ttttcttatt aaagtaatgg tacctggtaa atcaacaaaa aatacattag atatcgtagg
     3901 tattgtttta atgtctataa gtattatatg ttttatgtta tttacgacaa attataattg
     3961 gactttttta atactcttca caatcttttt tgtgattttt attaaacata tttcaagagt
     4021 ttctaaccct tttattaatc ctaaactagg gaaaaacatt ccgtttatgc ttggtttgtt
     4081 ttctggtggg ctaatatttt ctatagtagc tggttttata tcaatggtgc cttatatgat
     4141 gaaaactatt tatcatgtaa atgtagcgac aataggtaat agtgttattt ttcctggaac
     4201 catgagtgtt attgtttttg gttattttgg tggtttttta gtggatagaa aaggatcatt
     4261 atttgttttt attttaggat cattgtctat ctctataagt tttttaacta ttgcattttt
     4321 tgttgagttt agtatgtggt tgactacttt tatgtttata tttgttatgg gcggattatc
     4381 ttttactaaa acagttatat caaaaatagt atcaagtagt ctttctgaag aagaagttgc
     4441 ttctggaatg agtttgctaa atttcacaag ttttttatca gagggaacag gtatagcaat
     4501 tgtaggaggt ttattgtcac tacaattgat taatcgtaaa ctagttctgg aatttataaa
     4561 ttattcttct ggagtgtata gta
//
