LOCUS       NZ_CP094337             3001 bp    DNA     circular CON 28-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica strain 3018683606 plasmid
            pST3606-5, complete sequence.
ACCESSION   NZ_CP094337
VERSION     NZ_CP094337.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26818630
            Assembly: GCF_022760155.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Complete Genome Sequence of Salmonella enterica strian ST3606
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2022) Zhuhai Hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4; FALCON v. 0.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 304.03x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022760155.1-RS_2024_05_28
            Annotation Date                   :: 05/28/2024 04:41:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,124
            CDSs (total)                      :: 4,999
            Genes (coding)                    :: 4,847
            CDSs (with protein)               :: 4,847
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 55 of 152
            Pseudo Genes (incomplete)         :: 109 of 152
            Pseudo Genes (internal stop)      :: 25 of 152
            Pseudo Genes (multiple problems)  :: 33 of 152
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094337.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="3018683606"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pST3606-5"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2021-10"
                     /collected_by="Jie Wei"
                     /genotype="ST3606"
     gene            join(2349..3001,1..25)
                     /locus_tag="MQF88_RS25550"
                     /old_locus_tag="MQF88_25560"
     CDS             join(2349..3001,1..25)
                     /locus_tag="MQF88_RS25550"
                     /old_locus_tag="MQF88_25560"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023233475.1"
                     /translation="MENKAVTISTQLAIFIDSTIARPDLLFNSLNSEIGEVIDAMPQTL
                     PLPADAPADIPRVIGTSSFGKFNLNISLNRIDFVENYTPTEEIEKSVTEFKLKCNTLIA
                     TIFQKYGVVRIGLVGNYYIPHKNPSQLIADLYLNENKRNLDEITIRINNRDTFKNIQIN
                     NVINLSQGQVTAQNYNGNAVIVQLDYNSTDNNTPLDEGLTLALFKEKSIAYNSKHVEDV
                     SGL"
                     /name="hypothetical protein"
     gene            168..401
                     /locus_tag="MQF88_RS25555"
                     /old_locus_tag="MQF88_25565"
     CDS             168..401
                     /locus_tag="MQF88_RS25555"
                     /old_locus_tag="MQF88_25565"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_159126339.1"
                     /translation="MIKNHRPKTEKEIKAESEGLIRLCSMAFIFLIVLSIFMLIVYFGI
                     KDRELPDFANNLMALMTTLVGAIGGFIYGTKK"
                     /name="hypothetical protein"
     gene            complement(710..1033)
                     /gene="mobA"
                     /locus_tag="MQF88_RS25560"
                     /old_locus_tag="MQF88_25570"
     CDS             complement(710..1033)
                     /gene="mobA"
                     /locus_tag="MQF88_RS25560"
                     /old_locus_tag="MQF88_25570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            1306..1500
                     /locus_tag="MQF88_RS25565"
                     /old_locus_tag="MQF88_25575"
     CDS             1306..1500
                     /locus_tag="MQF88_RS25565"
                     /old_locus_tag="MQF88_25575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041644.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
                     EELQNSIQTRFEVENSTEI"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1987..2148
                     /locus_tag="MQF88_RS25705"
     CDS             1987..2148
                     /locus_tag="MQF88_RS25705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071784682.1"
                     /translation="MHEPPVQPDHCALSGNYRLESNPVRHAKAPLAAAIGNRVSRARFV
                     QMLTEFLK"
                     /name="replication initiation protein"
     Typing          complement(1043..1269)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.833"
                     /coverage="99.0"
                     /evalue="1.04e-81"
     Typing          1530..2059
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.6"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          complement(714..1033)
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="1.96e-62"
ORIGIN
        1 tgttgaggat gtgagtggat tatgaaattt ttcaaaccaa aaacagatgc gattgataca
       61 ttcgtgtaga accatcattc tcaaaaacaa gtagcaatat aaataatgcg aaatcaggaa
      121 gtgacacaaa ctcagcctgg attcatttta agatctcaat agaggaaatg ataaaaaacc
      181 acagaccgaa aacagaaaaa gaaataaagg ctgaaagcga aggtcttata aggctttgct
      241 ccatggcctt tatattttta atagttttat caatttttat gttaatcgtt tatttcggaa
      301 taaaagatag agaactacca gattttgcaa ataacctgat ggcactaatg acaacattag
      361 ttggagcgat aggtggtttt atatatggaa caaaaaaata acacagacaa aaacacaaat
      421 aaaaaaaaca aataacacac aagcacacca gccccatact tcggggcttt tacaaccgtt
      481 acctgacacc atttaccata acatctcatt acgcgcaccg ccaaaacgcg ctgaacgcga
      541 ttctgacgca gacaccgcaa aaagagatgt tttccccggg gtaaaccgga aaaatgcgtc
      601 aggattgctt tcagctcact gcatagctat gcatgaaagt gaatggcgat cggtttgggg
      661 gcttacggtg ttcataccgt ctgttttcga cagttttctc cccgggaagc taatctgcca
      721 taagcctgga taacagggca cggtgatact ccgtaatagc gatcagcacc tccgcatatt
      781 ccctatcccc gacacgcttg ccgtcgataa agagtttttt ctgtaacgcc cccagtctca
      841 taacttcttt cagtacccga tcatcagtca gtgagttaac tttcttaccg agagctgccg
      901 cccgtaaaaa accggaaacg gtcttgccgc attcagcagc cctttttctg atttcctggt
      961 cttcttctgc cgtcagacga acagggcgac tgatagcccg cctgcgcgta ttacttccac
     1021 ttcgttttgt cataaaacat ggctccgtat ctgacatggg gtgtcggggc aaagccctga
     1081 ccagggtaat tgtaatagcg tgcatgtatg cgcggtataa caattacaca tcctgtccta
     1141 tcagcaagct cgaattaccg acaaaggcac ggcagttttt tggcagtgac agtgttgtct
     1201 gactgaaatg tccgtcggca gaataccggc ggtaagacgg tccaaaagtg gtgcgcgata
     1261 taatcacacg acgcagatga cagacagaac ggagaaaaca gaaagatgaa caagcagcag
     1321 caaactgtac tcaacatggc gggattcata aaaagccaga gcctgacgct gctcgaaaaa
     1381 ctggacgcac tcgatgctga cgagcaggcc accatgtgtg agaagctgca cgaactcgca
     1441 gaagaactcc agaacagcat acagacacgc tttgaagtag aaaatagcac agagatataa
     1501 cgctcagggc aggatgccga acggcacaac agagcgtaag gagaaaatgt cacataaggc
     1561 gctcttccgc ttcctcgctc actgactcgc tacgctcggt cgttcgactg cggcgagcgg
     1621 tgtcagcgca ctcaaaggcg gtaatacggt tatccacaga atcaggggat aaagccggaa
     1681 agaacatgtg agcaaaaagc aaagcaccgg aagaagccag caccgcaggc gtttttccat
     1741 aggctccgcc cccctgacga gcatcacaaa aatcgacgct caagtcagag gtggcgaaac
     1801 ccgacaggac tataaagata ccaggcgttt ccccctggaa gctccctcgt gcgctctcct
     1861 gttccgaccc tgccgcttac cggatacctg tccgcctttc tcccttcggg aagcgtggcg
     1921 ctttctcata gctcacgctg taggtatctc ggcccggtgt aggtcgttcg ctccaagctg
     1981 ggctgtgtgc acgaaccccc cgttcagccc gaccactgcg ccttatccgg taactatcgt
     2041 cttgagtcca acccggtaag acatgcaaaa gcaccactgg cagcagccat tggtaaccga
     2101 gttagcagag cgagatttgt ccagatgctt acagagttct tgaagtgatg gcctgactac
     2161 ggctacacta gaaggacagt atttggtatc tgcgctctgc tgaagccagt tacccggtta
     2221 gacaatctgc caggattagc taaccttcga aaaaccacct gccagggtgg ttttttcgtt
     2281 taagatactc acaacacgtt aatttcgcaa tacttcaatt aataccaatg caaaatagga
     2341 aagaaaaaat ggaaaacaag gccgtcacaa tatcaacaca gctagcaata tttattgaca
     2401 gcaccatagc tagaccagat cttctcttta atagcctaaa ctcagaaatt ggcgaagtta
     2461 tagacgcaat gccacagacg cttcccctgc ctgcagatgc acctgcagat atccctcgcg
     2521 ttattggcac atcgtccttt ggcaagttca acttaaacat atcactaaac agaatagatt
     2581 ttgtagaaaa ctacacccct actgaggaga tcgaaaaatc agtaacggaa ttcaaattaa
     2641 agtgcaatac gctaatagca acaatattcc aaaaatatgg agtcgtaaga atcggcctag
     2701 ttggtaacta ttacatccca cataaaaatc catctcaact aatagctgat ctgtatttaa
     2761 acgaaaacaa aagaaattta gatgaaataa caataagaat aaataaccgc gatacattca
     2821 aaaatataca aataaacaat gtcatcaatt taagccaagg acaagtaacc gcacagaact
     2881 acaatggaaa tgcggtgata gttcaacttg actacaactc aaccgataat aacacaccac
     2941 ttgacgaagg gttaacctta gccctattta aagaaaaatc cattgcttat aactccaagc
     3001 a
//
