LOCUS       NZ_CP094336             4059 bp    DNA     circular CON 28-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica strain 3018683606 plasmid
            pST3606-4, complete sequence.
ACCESSION   NZ_CP094336
VERSION     NZ_CP094336.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26818630
            Assembly: GCF_022760155.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4059)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Complete Genome Sequence of Salmonella enterica strian ST3606
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4059)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2022) Zhuhai Hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4; FALCON v. 0.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 304.03x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022760155.1-RS_2024_05_28
            Annotation Date                   :: 05/28/2024 04:41:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,124
            CDSs (total)                      :: 4,999
            Genes (coding)                    :: 4,847
            CDSs (with protein)               :: 4,847
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 55 of 152
            Pseudo Genes (incomplete)         :: 109 of 152
            Pseudo Genes (internal stop)      :: 25 of 152
            Pseudo Genes (multiple problems)  :: 33 of 152
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094336.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4059
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="3018683606"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pST3606-4"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2021-10"
                     /collected_by="Jie Wei"
                     /genotype="ST3606"
     gene            complement(join(2869..4059,1..957))
                     /gene="mobQ"
                     /locus_tag="MQF88_RS25535"
                     /old_locus_tag="MQF88_25545"
     CDS             complement(join(2869..4059,1..957))
                     /gene="mobQ"
                     /locus_tag="MQF88_RS25535"
                     /old_locus_tag="MQF88_25545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_050963243.1"
                     /translation="MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPRELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTMRAVGPAGFGGKVRDWNDRTHAEA
                     WRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRSSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDSN
                     AAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHATSLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQL
                     LKREEELRRKEQEDTERSRAEQLGKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLL
                     LHNRNGEYTLWGNELEKYRTRIFERVDLMRDRSGYICDRSEIGQLPPLQRVYSSATFEQ
                     LLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTLMPVM
                     SSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSVDNSQLVISALTDKGLRYA
                     GYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWEEW
                     QLEEDARTHATVRRHDRGWSQ"
                     /name="mobQ"
     gene            1135..1389
                     /gene="mobC"
                     /locus_tag="MQF88_RS25540"
                     /old_locus_tag="MQF88_25550"
     CDS             1135..1389
                     /gene="mobC"
                     /locus_tag="MQF88_RS25540"
                     /old_locus_tag="MQF88_25550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091746.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVVVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobC"
     gene            1922..2623
                     /locus_tag="MQF88_RS25545"
                     /old_locus_tag="MQF88_25555"
     CDS             1922..2623
                     /locus_tag="MQF88_RS25545"
                     /old_locus_tag="MQF88_25555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001281397.1"
                     /translation="MSDLIAYKSNALVEASYKLTLQEQRFLLLCIGRLKSGADAESPKL
                     QKTMTITAAEYFDSFPDMGRKNAEVQLQEAIDRLWDRSIILKDDEKREEFRWIQYRAQY
                     AKGEARAQITFSDAVMPYLTQLQGQFTRVVIKNISRLSRSYSIRIYELLQQFRSTGERI
                     IALDDFRSMLDIEHKYQTYKSLNQQLLRPCIDELNKKSDLAVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     Typing          complement(600..958)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.611"
                     /coverage="100.0"
                     /evalue="1.82e-180"
     Typing          959..1134
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.82"
                     /coverage="100.0"
                     /evalue="4.47e-69"
     Typing          1924..2622
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.857"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(5..1044)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.983"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2873..4059)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.75"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ggtagcatgg ctcatcgctt cctttcgttc ggtgttcagc tcttcccagc gtctgcgcgt
       61 cgcctgcata tctgccatca tcgacatggc attactggtg agtttccatg ccgcattact
      121 gtccttcggc aacgcttcga tgatgtcacg tagtgtgtac gaagttgcgt tgtcaggaag
      181 cacgatattc agaaggtcag ccacacggcg ggcaggctct gtcagcccgc tgctcctgag
      241 ttcagtgcgg gaaatctgta tttccaggtt aagcctgtta atcagacgat tctgttcgcc
      301 gcgttctgtt tcgataccgc gtgtttccat cgcacaggca gactttccga ggtgaatacc
      361 aggcgttttc tcaagcccct gtcgctcgta tgaacgatgg tctatctctt cctgataacc
      421 ggcgttcgcc agtgccctgt ttgcatggtc agcccatgat gcccgccacg cctcggcgtg
      481 tgtccggtcg ttccagtccc tgacctttcc gccgaaccca gcaggtccga cagccctcat
      541 ggtcagcatg atgtgcgcat ggggatttgt tttatccatg tgatggaacg ccacatcagc
      601 aatcatgccc tgactgacaa agttttctct gacaaaggcg agaacggttt cccgtgcggc
      661 atcctgcggc agttcgcggg ggatggcgag ttcaatttcc cgcgcaagtt gtgagttctt
      721 ccggcgttcg gccttctcaa cggcattcca gagttcggca cggttcgtac accaggcagg
      781 ggctgtcgcg ggggtcagaa tcacagcttc agccacaccg cttttgcggg tgtagtcatg
      841 agtcagtcct gtacgctcat caagcatcag tgaaccggaa cgataggcgg cagaagcaac
      901 ggcgctgtag ccgctgtttc tggagatgat tttcatgctg agatgataaa tcgccatttc
      961 tgccgtaatg cctttttgtc gtgttctttc agccccgcag ggcgcacaca atcgaaacgg
     1021 agtgaagatt gtataagtgc gcacttcgtg gttttttcgc attatgccag ttcagttttt
     1081 aaactgccag tgacgcgcta aaatgcgatt tttcatcacg cacggagtta catcatgagc
     1141 agaacgctcg aacagaagat tgctgacgct gaggcgagat tacagcgcct gaaggcgaag
     1201 agccggagcc tggacacagc gcagaaggtc gttgtgggtg cagcattgct ggcaaaggtc
     1261 agaaagccgg aggaggtgca gttgcgtgcc tggttactcc agttcctgaa ggcagaggtg
     1321 acacgacagg ctgatgtgac gcgaatactg ccgctgatta acgagctgga ggcactgcca
     1381 gaacagtgat tgtatcgtcc gctcgccgca gccccagcga ccgagcgtta gcgagcgagt
     1441 gggcgaggaa gtggaagtga atccgtcgcc tgattgagca catacgcacg gtttttcggc
     1501 aggtgatatg cgctgaaccc gcatgaatac tggatttcca cagggttgga gggggagtat
     1561 tcggaacttg caattctgct tttttgcaag gcattgtttt tattgttttt ttgtttttag
     1621 caccccaagt tatccacagg ctcgtcgtta agtttttaga tcttgttttt aagatcttgt
     1681 ttttaatact tgttttaggg gcaaaattcc ttataaaaaa caaaatgtta caacgctata
     1741 ggtaatataa tttaaggtaa aggtaatatg atttaaggtg tttaggtaat ataatttaag
     1801 gtaaaggtaa tatgatttaa ggtaatatcc acaggaaaag ggatattaaa aaaaaaaggc
     1861 attgcctttc gttgagggta tgtttatctt ttattcatta ccttttgggg agggatgctc
     1921 tgtgtcggat ctaattgcct ataaatccaa tgcgctggtt gaagccagtt ataaattgac
     1981 cctacaggaa cagcgatttt tgttactttg catcggtcga ttgaagtctg gggctgatgc
     2041 agaatctcca aaattgcaaa agacaatgac cattacagct gcggaatatt tcgattcatt
     2101 ccctgacatg gggcggaaaa atgccgaggt tcagttacag gaagcaattg atcgtttgtg
     2161 ggacaggtca atcattctca aggatgacga gaaacgtgag gagttccgct ggatccagta
     2221 tcgggcacag tacgctaaag gcgaggccag agcacaaata acattttctg acgcagtaat
     2281 gccttatttg acacaactac aagggcaatt tactagagtt gtaatcaaga atatatctag
     2341 attatcaaga agttacagta taaggatata cgaactcctc cagcagttcc gcagtactgg
     2401 cgaacgtatt atcgctctcg atgattttcg ctcaatgctt gatatagagc ataaatatca
     2461 aacatataaa tcacttaacc agcaattatt aagaccctgc attgacgaac tgaacaaaaa
     2521 aagcgacctg gctgtaacgg ttgagacgat caaaaagggg cgcacggttg tagccctgca
     2581 ttttcgcttc aaggaagaca aacagatcaa gatgacgatc taggatcgat tttaaggcat
     2641 ctaaaacgtt ctctggtgtg cttttttagt gtcaggtatg cgatggtact gctttggcaa
     2701 taaattgcgt cagaattgat ttgagaggtc aaaaaagaac ccccaatttt ttgggggcgg
     2761 gaaaacgata aagttgattt gtgttatgtg tgcttcttgc attcatccct gtcgatgaac
     2821 atcgacgaac ataacacgat gttaaacaaa acaaaatatt gttcacattc actgtgacca
     2881 accgcgatca tgtctcctca cggtggcgtg tgttcgtgca tcttcctcga gctgccattc
     2941 ctcccaggta cgattaaaac ccagcgagcg gaacagatga tccggctgtt tttctggtgt
     3001 gttgacggca gcaaaaagcg gtgcctcacg ggttttcaga tgaaactcca taagttccgg
     3061 cgcaggtgat atgtggctgt ctgcatcgtg atttacggca acaccatacc ctgcataccg
     3121 taacccctta tcggtcagtg cactgatgac cagctggctg ttatcgactg agggaacggc
     3181 aaacgcggga tacagcgtac cattaagccg gacaacaccg cccagagagt catccacgcc
     3241 catgaccagc aaaagctgaa gctggcgggt ttcccggtcg acagaactca ttaccggcat
     3301 cagcgtcggt ggcagacgtc cctgcgtaaa atccaccttc cttgctgcca gtgatggcat
     3361 ggctggctgg cggtcttctc caagacagaa agactccggc catgtcttcg gctggcggag
     3421 attgcgggta tgttgcggcc atgtctggca aacctgcgtc agcagttgct caaaggtcgc
     3481 agaggaataa acacgttgca gtggcggaag ttggccgatt tcgcttcggt cacagatata
     3541 accactcctg tcacgcatta aatcaacacg ctcaaagatt ctggtgcggt atttctccag
     3601 ctcgttaccc cagagcgtat attctccgtt ccggttgtga agcagaaggt aacaggtcat
     3661 ttccccgtta ccaggcatgg gggcctcgcc ataccccgta acgactgcgc tcagtacccc
     3721 tgaatccata acggcattgt catttttccc gagctgctcc gcgcgactac gttctgtatc
     3781 ctcctgctcc ttccggcgca attcctcttc acgtttaagc aattggactc tgagagctgc
     3841 aaggccggat gccccccact gctgccactg tttttcaaat gccgtctgac tcgcgggaat
     3901 gtcctgtttc tccaccttcc ggtaatgctg tcgcaatttt tccatttgct ggctcagcga
     3961 ctggattttt ccctgctcac tacggtattc cggtgccgcc cattgcatca ggggaatacg
     4021 ggaaaaaccg gacgaaaacg gcgatgattt tttcaggct
//
