LOCUS       NZ_CP094335             3592 bp    DNA     circular CON 28-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica strain 3018683606 plasmid
            pST3606-3, complete sequence.
ACCESSION   NZ_CP094335
VERSION     NZ_CP094335.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26818630
            Assembly: GCF_022760155.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3592)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Complete Genome Sequence of Salmonella enterica strian ST3606
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3592)
  AUTHORS   Wei,J., Zhang,Z., Li,X. and Zhang,Q.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-MAR-2022) Zhuhai Hospital, Jinan University, 79
            Kangning Road, Zhuhai, Guangdong 519000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4; FALCON v. 0.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 304.03x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022760155.1-RS_2024_05_28
            Annotation Date                   :: 05/28/2024 04:41:31
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,124
            CDSs (total)                      :: 4,999
            Genes (coding)                    :: 4,847
            CDSs (with protein)               :: 4,847
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 152
            CDSs (without protein)            :: 152
            Pseudo Genes (ambiguous residues) :: 0 of 152
            Pseudo Genes (frameshifted)       :: 55 of 152
            Pseudo Genes (incomplete)         :: 109 of 152
            Pseudo Genes (internal stop)      :: 25 of 152
            Pseudo Genes (multiple problems)  :: 33 of 152
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094335.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3592
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="3018683606"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pST3606-3"
                     /geo_loc_name="China: Zhuhai"
                     /lat_lon="22.28 N 113.58 E"
                     /collection_date="2021-10"
                     /collected_by="Jie Wei"
                     /genotype="ST3606"
     gene            complement(join(2686..3592,1..173))
                     /locus_tag="MQF88_RS25510"
                     /old_locus_tag="MQF88_25520"
     CDS             complement(join(2686..3592,1..173))
                     /locus_tag="MQF88_RS25510"
                     /old_locus_tag="MQF88_25520"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="WP_242935025.1"
                     /translation="MIVLINNNIANDISIFNMANCESFFDKPIFELIKAWLRNLGIVAF
                     NQIKQNDGENNPVVGSFEWDITAPSYVSPLAEYSSDGLIPGFVVCDFALGFNRNEITTD
                     AADTFIRKVQMTKSSRTNQRIMFVLFARRFEKNAFNKLRSEGVLAITIANAFGNKVDES
                     LARLSKVIQGTLSIERHPDELLQMVKDLESISGENGNLRGYIFELFVSSQICNFYDYGN
                     VRINKEYKINGKHAEADVVLETNDDIYIVECKNVKTLPSMEVSLWMKTRVPIINSYYKS
                     NNPDNKNIHHRLWVTGNIYPKDINRLDEFKCNNKKIDVDYLFGQSLDDFFYQKKQVFNL
                     YRKVISPDYKKGQIPDFDL"
                     /name="NERD domain-containing protein"
     gene            complement(154..606)
                     /locus_tag="MQF88_RS25515"
                     /old_locus_tag="MQF88_25525"
     CDS             complement(154..606)
                     /locus_tag="MQF88_RS25515"
                     /old_locus_tag="MQF88_25525"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_242935026.1"
                     /translation="MKKNIVRQVLESYGPCISSELAERIKRQNPSMSSDAIRKMISRST
                     DIGKLPFLRFSHNRRFIYLKDDFGSFKFWRALKKCMREANSAYSHAILSVINNGGYLKV
                     KDFGIVSGSPIKQAKHLSYESVLKNLLSAKILRSVYIDGVGDCFDK"
                     /name="hypothetical protein"
     gene            complement(1038..1361)
                     /gene="mobA"
                     /locus_tag="MQF88_RS25520"
                     /old_locus_tag="MQF88_25530"
     CDS             complement(1038..1361)
                     /gene="mobA"
                     /locus_tag="MQF88_RS25520"
                     /old_locus_tag="MQF88_25530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            1633..1827
                     /locus_tag="MQF88_RS25525"
                     /old_locus_tag="MQF88_25535"
     CDS             1633..1827
                     /locus_tag="MQF88_RS25525"
                     /old_locus_tag="MQF88_25535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041642.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEAESGTGV"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2323..2481
                     /locus_tag="MQF88_RS25530"
                     /old_locus_tag="MQF88_25540"
     CDS             2323..2481
                     /locus_tag="MQF88_RS25530"
                     /old_locus_tag="MQF88_25540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071532985.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPKRHDLSPLAAATGNWNSRAMIM
                     RSVLQSS"
                     /name="replication initiation protein"
     Typing          complement(1371..1595)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="89.167"
                     /coverage="100.0"
                     /evalue="4.85e-75"
     Typing          1871..2391
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.714"
                     /coverage="95.0"
                     /evalue="0.0"
     Typing          complement(1042..1361)
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="8.379999999999999e-60"
ORIGIN
        1 acaggattgt tctctccatc attttgtttt atttgattaa aagccacaat acctaaattt
       61 cgcaaccatg ccttaatcag ttcaaatatt ggcttatcaa aaaaagactc gcaatttgcc
      121 atattaaaga tgctgatatc attagctata ttattattta tcaaaacaat caccaacacc
      181 atcaatatac acagatctaa gtattttagc tgaaagcaga ttttttagaa cagattcata
      241 acttaaatgc ttggcctgct ttatcggaga gccagacaca atcccgaaat cctttacctt
      301 caagtatccg ccattattaa ttacggaaag tatagcgtga gaatacgccg aatttgcctc
      361 acgcatacat tttttgagcg cccgccaaaa tttgaagcta ccaaagtcat cttttagata
      421 aatgaatctc ctgttatgac taaatcttaa aaatggcaac ttaccaatat cagtgcttcg
      481 agagatcatt ttacgtattg catcagatga catagaagga ttctgacgct taatcctctc
      541 agcaagttca gaagatatgc acggaccata actctcaagc acttgtctaa caatgttttt
      601 tttcataaat tcatcttatt tttgtcacac tacgctattt ataaaattac actacgtgta
      661 atatctatag atcccaaaaa aaaacacaaa gaaaaaaatc ataaaaatca aatatttaac
      721 aaaagcaaca tatcacaaaa aacacacctg cgagatttat ccttaaaaat caagatgtta
      781 cgtttgtgac atttcatcat catatatcaa ccgccctatt taccataatc ccttaattgt
      841 acgcaccact gaaacgcgct gaacgcgatt ctgacgcaga caccgcaaaa agagatgttt
      901 taccccggaa aaataggaag gatgcgtcag gatcgttttc agctcgctgc atagttatgc
      961 atgaaagcga atggtgatca ctttgggagc ttacggtgtt cataccgtct gttttcgaca
     1021 gttttctccc cgggaagcta atctgccata agcctggata acagggcacg gtgatactcc
     1081 gtaatagcga tcagcacctc cgcatactcc ctgtccccga cacgcttgcc gtcgataaag
     1141 agttttttct gcaacgcccc cagtcgcatg acttctttca gcacccggtc atcagtcagt
     1201 gagttaactt tcttaccgag agctgccgcc cgtaaaaaac cagaaacggt cttgccgcat
     1261 tcagcagccc tttttctgat ttcctggtct tcttctgccg tcagacgaac agggcgactg
     1321 atagcccgcc tgcgcgtatt acttccactt cgttttgtca taaaacatgg ctccgtatct
     1381 gacacggggt gtcggggcga agccctgacc agggtaattg taatagcgtg catgcatgcg
     1441 cggtataaca attgcacatc ctgtcctgtc tgcaagttcg aattaccaac aaagcactgc
     1501 tgttttttgg cagtgacagt gttgtctgac tgaaatgtcc gtcggcagaa taccggcggt
     1561 aagacggtcg aaaagtggta cgcgatataa tcacacgacg cagaggacag acagaacgga
     1621 gaaaacagaa agatgaacaa gcagcagcaa accgtactca acatggcggg attcataaaa
     1681 agccagagcc tgacgctgct cgaaaagctg gacgcactcg atgccgacga acaggccgcc
     1741 atgtgtgaga agctgcacga actcgcggaa gaactccaga acagcataca gacacgcttt
     1801 gaagcggaaa gtggcaccgg ggtataacag tgtatcctgc tccagacagg atgcagaacg
     1861 gtataccggt gcgtaaggag aaaatgccac ataaggcgct cttccgcttc ctcgctcact
     1921 aactcgctac gctcggtcgt tcggctgcgg cgagcggtat cagctcactc aaagacggta
     1981 atgcggttat ccacagaatc aggggataaa gccaaaagaa acatgtgagc aaaaaacaag
     2041 aacccgaaaa aggccgcgcc ggtggcgttt ttccataggc tccgcccccc tgacgagcat
     2101 cacaaaaatc gacgctcaag ccagaggtgg cgaaacccga caggactata aagataccag
     2161 gcgtttcccc ctggaagctc cctcgtgcgc tctcctgttc cgaccctgcc gtttaccgga
     2221 tacctgtccg cctttctccc ttcgggaagc gtggcgcttt ctcatagctc acgctgttgg
     2281 tatctcggcc cggtgtaggt cgttcgctcc aagctgggct gtgtgcacga accccccgtt
     2341 cagcccgacc gctgcgcctt atccggtaac tatcgtcttg agtccaaccc gaaaagacac
     2401 gacttatcgc cactggcagc agccactggt aactggaata gcagagcgat gataatgcgg
     2461 tccgtactac agagttcttg aagtgatgcc ccaactacgg ctacacttaa aggacaggat
     2521 ttggtatctg cgctctgctg aagccagtta cctaggttag gtaatctgct aggattaact
     2581 aaccttcgaa aaaccacctt gccgggtggt tttttcgttt catggaggaa gatacgcttt
     2641 tcaagccgtc atcgtcaaga aatgcagaga ctagaaaacg tcattctata agtcaaaatc
     2701 gggtatttgc ccttttttat aatctggcga aatgactttc ctatataaat taaacacttg
     2761 ttttttttgg tagaaaaaat catccaaaga ctgaccaaat aaataatcaa catcaatctt
     2821 cttattatta catttaaact cgtccaatcg gtttatatct ttaggatata tattccccgt
     2881 aacccacaaa cgatgatgta tatttttgtt atcagggtta tttgatttgt agtaggaatt
     2941 tataattggc actcttgttt tcatccaaag actaacctcc atcgaaggta aagtcttaac
     3001 atttttgcac tcaacgatat aaatatcatc gttagtttcc aatacaacat cagcttcggc
     3061 atgtttaccg tttattttat attctttatt aatacgaaca tttccataat catagaaatt
     3121 acaaatttga gaggaaacaa aaagctcaaa aatatacccc cttaaatttc cattctctcc
     3181 agagatagac tccagatctt ttaccatttg aagtaactca tcaggatgtc tttcaataga
     3241 taaagttccc tgaatcacct tcgatagtct ggccaagctc tcatcgacct tattaccaaa
     3301 cgcattagct atagttatag ccagaacccc ttcactcctt agcttgttga aggcattctt
     3361 ctcaaaacgt ctagcaaaaa gaacaaacat aatcctctgg tttgtcctag aggacttggt
     3421 catctgaact tttcttatga aggtatcagc agcatcggtg gtaatttcat ttcgattaaa
     3481 ccctagagca aaatcacaga caacaaaacc tgggatgagt ccatcgctgg aatattcagc
     3541 aagaggggac acataacttg gcgctgttat atcccactcg aaagaaccaa cc
//
