LOCUS       NZ_CP094287             2762 bp    DNA     circular CON 24-APR-2024
DEFINITION  Acinetobacter baumannii strain NY5301 plasmid pNY5301-4, complete
            sequence.
ACCESSION   NZ_CP094287
VERSION     NZ_CP094287.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26814682
            Assembly: GCF_022759565.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2762)
  AUTHORS   Zhou,D.
  TITLE     complete sequence of strain NY5301
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2762)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2022) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology, No.
            20, Dongdajie, Fengtai, Beijing, Beijing 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. V3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022759565.1-RS_2024_04_24
            Annotation Date                   :: 04/24/2024 04:19:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,160
            CDSs (total)                      :: 4,063
            Genes (coding)                    :: 3,972
            CDSs (with protein)               :: 3,972
            Genes (RNA)                       :: 97
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 75
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 24 of 91
            Pseudo Genes (incomplete)         :: 59 of 91
            Pseudo Genes (internal stop)      :: 18 of 91
            Pseudo Genes (multiple problems)  :: 9 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094287.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2762
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="NY5301"
                     /isolation_source="ascites"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pNY5301-4"
                     /geo_loc_name="China:Hebei"
                     /lat_lon="38 N 114 E"
                     /collection_date="2018"
                     /collected_by="a teaching hospital"
     gene            349..831
                     /locus_tag="MQE20_RS20830"
                     /old_locus_tag="MQE20_20830"
     CDS             349..831
                     /locus_tag="MQE20_RS20830"
                     /old_locus_tag="MQE20_20830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_163071732.1"
                     /translation="MADIPDAILSSYNGAVEVLQAGNYSQAQILGFFNVLQKTYVQLKS
                     NKSTSLDETIENIEESIPFLAALLPSLNNKSELYTFIGLLLQFFSMFIGNQPQTVNNFN
                     APVVIINESEQKAPARPSMECIQPIPKKSTGMCACGSGLVSQLCCNNSVKSNLKTI"
                     /name="hypothetical protein"
     gene            1375..>2304
                     /gene="repM"
                     /locus_tag="MQE20_RS20835"
                     /old_locus_tag="MQE20_20835"
                     /pseudo=""
     CDS             1375..>2304
                     /gene="repM"
                     /locus_tag="MQE20_RS20835"
                     /old_locus_tag="MQE20_20835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /name="repM"
ORIGIN
        1 ccttttttcc aaaaaacagg gaaacatacc tagatggggc tgaaatcatc aacaagcgaa
       61 aaatagagcc attcagagcc taaattagtt acacctgaag aaatagactc aaaaaaatac
      121 tgtttttaaa atatgtggga taagaaattc agaattaagt gtcataaaaa attgcttaat
      181 ttttctacct aagtaattat atttttttaa attaatttat taaaaaacat gttaaatatc
      241 cctgctgtat gctcatgtgg tttggtcttc ccttcaggta ttgttattgg ggatgtcaca
      301 aacataactt tgcgtggaaa taagtctcag tgtcctcgtt gtggtcgcat ggcagacatt
      361 cctgacgcta ttttaagttc ttataacggt gctgttgagg tactacaagc gggtaattat
      421 tcacaagcgc aaatcctagg tttttttaat gttctgcaga aaacatatgt tcaattaaaa
      481 tctaataagt cgacatcatt agatgaaaca attgaaaaca ttgaagaatc tattccattt
      541 ttagctgcat tattaccgtc acttaataat aaaagtgagc tttatacatt tattggttta
      601 ttgcttcagt tctttagcat gtttattggt aatcaacctc agactgtaaa taactttaat
      661 gctccagtag taatcattaa tgaatcagaa caaaaagcac ctgctagacc aagtatggaa
      721 tgcattcaac ctattcctaa aaaatctaca ggtatgtgtg cttgtggatc tggtttagtc
      781 agtcagttat gttgcaataa ctcagtaaaa tcaaacttaa aaactatatg aaacactttt
      841 aaaaaaccga gcgagtgtct acgagcgatt gagcgttata aaaaatttcg cccttacttt
      901 tccctgatta caagctccct tttgattctc cagggtaagt acagagcatc ccgaatgggt
      961 gcgaacagac ttaaattgaa tctagaccga gcgaagcgag cataaagctt tctgagcgaa
     1021 gcgaaggcgt agttcttttc atcgaatttt cgaccggcct ttgtaaaaaa cagcccctca
     1081 accgagcgta agcgaggtta aaacgtccga gcataagcga gggcataggg ctgtttttca
     1141 tgcctgttta ggcttttata tatattttaa agtttttaaa tgcttttacg ccctctgaaa
     1201 gcattgatat aactaagttt taaggctaat aacgacacag attccttgtt ataacgacac
     1261 agattccttg ttataacgac acagattcct tgttataacg acacagattc cttgcataaa
     1321 gacacacagt gctataatgt gtctttatgc acataattat ataacgtgtc taatatgaag
     1381 aatggattag tagtgaaaga taatgccttg atgaatgcta gttataattt agaagtaaca
     1441 gagcaacgtc taatactttt agcaattatc aatgcacgtg aaacacagca aggaattacg
     1501 tcagatagca agttagagat acatgctaat gactatgcca atcagtttaa tgtgaagaag
     1561 gaaaccgctt atgaagcatt aaaaaatgcg gttaataatt tgtttgaacg ccagttctcc
     1621 ttcaaagaaa ctacaaaaaa aggggttggt gtagtccgat ctcgttgggt aagtagaatc
     1681 aaatatattg atgattcagg tctattagaa atcacttttg cccctgatgt tgttccatta
     1741 atcacaaggc ttgaacaaca tttcactagc taccagttaa aacaggtttc acagctcacc
     1801 agtaaatacg ctatccgctt gtatgaagtt ttaatcgcat ggcgtgaagt tggcaaagtg
     1861 cctaagattg atctcgccga atttagagaa aggctaggta ttgcagctga tgaatataaa
     1921 gcaatgaatc acttcaaaag ccgtgtacta gaaccatcta tcaaacaaat taacgagcat
     1981 acggacatta cagtaagtta tgatcaacat aaaactggac gtactattac tggcttttcc
     2041 ttcaaattta agcaaaagaa tcctctaaaa attactaagc aaacagagat aaaaagagac
     2101 cctaataccc ctgacttttt cattgagatg acagatgctc aaagatattt atttgctcaa
     2161 aagctatctg tactacctga agttgggagc gaatatgcaa agattgggga atcatctgaa
     2221 gactttgtta aacgtcttgc agatatgctt ttagaaccaa aaaaaatcaa aatgttttat
     2281 ccattgctgg aacagctcgg ttttaattct aaaaaacaac aaccgataca aaaacaggtc
     2341 gatgaaccta agtttttaga tttatctgat atgcagatca atcgaatttc ttatggcatg
     2401 tccaggcata aaaaatttgc tcacttgaaa caagaagacg aatcgcctga tgacttcatg
     2461 caaaagcttc gcatcatgtt aaaagaccca aaacagcaaa ttcaatttta tgactaccta
     2521 aaagctaatc cttaagtttt ctcctttaga aaagatttca aaacgcccca aaatttgggg
     2581 cttattttta tcttttccaa aggtccattt tttgtttctc gaagagaaac gcgtaagcgt
     2641 gcattccctt ctgctgtcgg aaaatgatta accctcaaaa ccatcaaaag ttgccgatcg
     2701 gcaacttttg gaatattaga ttctcatgca ctccatccaa gcgcctaaaa tcgcatttaa
     2761 gc
//
