LOCUS       NZ_CP094279             3360 bp    DNA     circular CON 11-APR-2024
DEFINITION  Klebsiella aerogenes strain NY1688 plasmid pNY1688-7, complete
            sequence.
ACCESSION   NZ_CP094279
VERSION     NZ_CP094279.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26813722
            Assembly: GCF_022759585.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella aerogenes
  ORGANISM  Klebsiella aerogenes
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3360)
  AUTHORS   Zhou,D.
  TITLE     complete sequence of strain NY1688
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3360)
  AUTHORS   Zhou,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-MAR-2022) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Microbiology and Epidemiology, No.
            20, Dongdajie, Fengtai, Beijing, Beijing 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. V3.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022759585.1-RS_2024_04_11
            Annotation Date                   :: 04/11/2024 17:37:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,891
            CDSs (total)                      :: 5,764
            Genes (coding)                    :: 5,614
            CDSs (with protein)               :: 5,614
            Genes (RNA)                       :: 127
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 150
            CDSs (without protein)            :: 150
            Pseudo Genes (ambiguous residues) :: 0 of 150
            Pseudo Genes (frameshifted)       :: 57 of 150
            Pseudo Genes (incomplete)         :: 98 of 150
            Pseudo Genes (internal stop)      :: 21 of 150
            Pseudo Genes (multiple problems)  :: 20 of 150
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP094279.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3360
                     /organism="Klebsiella aerogenes"
                     /mol_type="genomic DNA"
                     /strain="NY1688"
                     /isolation_source="phlegm"
                     /host="Homo sapiens"
                     /db_xref="taxon:548"
                     /plasmid="pNY1688-7"
                     /geo_loc_name="China:Beijing"
                     /lat_lon="40 N 116 E"
                     /collection_date="2014"
                     /collected_by="a public hospital"
     gene            31..966
                     /locus_tag="MQE04_RS29410"
                     /old_locus_tag="MQE04_29410"
     CDS             31..966
                     /locus_tag="MQE04_RS29410"
                     /old_locus_tag="MQE04_29410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_045626452.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            969..1499
                     /locus_tag="MQE04_RS29415"
                     /old_locus_tag="MQE04_29415"
     CDS             969..1499
                     /locus_tag="MQE04_RS29415"
                     /old_locus_tag="MQE04_29415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(2838..3224)
                     /locus_tag="MQE04_RS29420"
                     /old_locus_tag="MQE04_29420"
     CDS             complement(2838..3224)
                     /locus_tag="MQE04_RS29420"
                     /old_locus_tag="MQE04_29420"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     Typing          32..963
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.177"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 acagtgcgcc ctgccggggg ctgacacaac atggcaacgt atcatctcag cgtgaaattt
       61 ggcggcaagg gtaaagccct tgctcatgcc agttacatta cgcgggaaga taagttcagc
      121 cagcgccagg atctcgagca caccgaacac ggcaatatgc cggaatgggc gagagatgaa
      181 cccgcccatt tctggcaggc tgcggatgcg ttcgaacgtg ccaacggttc aacgtacagg
      241 gaaattgaga tcgctctacc ccgcgagctg aatgaagcgc agcggctggc gcttgtccgg
      301 gattttgtga agcaggaaac gggcgacaaa catgcatgga cgtttgcgat ccacaatccg
      361 aaagccagca ttgacggcgg cgaacagccg cacgcccata tcatgatgag ccagcgcgtc
      421 aatgacggta ttgagcgcag tcccgaacag tatttcaggc gctataacgc caaatttccg
      481 gcgcgtggcg gcgcgcgcaa ggactcaggg cataatttaa cccctacaga acaaaaacag
      541 gcactgaaag ccctgcggga gcgctgggag cgtacgcaca acgcgcatat gaaacgatat
      601 ggctttgagc agggttttat tgatagccgg tcactgaaaa cacagggtat cgaccggaaa
      661 ccggaacagc atctcggttt tgaagcagcc ggacgactgg acgacagcca gaggcaggat
      721 attaaagaca gccggacgtt ttcagtcgtg gatgtgcctg aacaggcgaa acatatcgac
      781 cacagcgacc gtagctggat gaatgccagc ggtatcgagg taaaccggaa ggaactggtc
      841 agatctctga cgcatgatat ctcgcagcag tacgggcggg agatggctgc acgggtcaca
      901 aaacagggaa atgttgaaat agagcgcgtg aaatccctgt cacgcggatt ttccataagc
      961 aggtaactat ggcgagcacc gaagaaaaac ttctcacact cctgctgtcg gcggagcatc
     1021 tgaaagaggc cgcaaaagag cagcagaaag ccgtggcgga ttcgctggcg gtggcaaggg
     1081 aaaccctgaa aggctaccgg gaaatatcgg acagtgtggc acagcaggta agggatgaag
     1141 tccggcagga agtgcagaaa atggatgttg cggggctgat tggcgagcgt atcagcgctg
     1201 attttcagcg tctggaaaaa tccgtcggga acatgaaaat caatgcggac gcgctggaca
     1261 aggaaatttc cattatccgc agtaacatca tcgcggagta caacacgctg cggggttaca
     1321 gctggaagtg gtttgctggg gttgcggttg cctttgtcgt actgatattt gccacaagct
     1381 ggtttgtgaa aacggaacta caggacaatt acaacgcgtc tgctgccgtc tatcagaaag
     1441 tggcagacct tgaaaagctg ctgacaacgg aacagaaacc ggaaaagaaa aagaactgac
     1501 gcgctgcgct tgtccaacgc ctcacgttcg cacaataaat tgcgcacccg ttcaccgttt
     1561 tcagccgagt ttggggcgtc ttttgagact tccggcctga attcaggccg gaagttctcg
     1621 ccagtcagtc aggtgcatgg ttatgcatgg ggctgaaaat cacggtatgc gattctgagc
     1681 ggttttcggt gagaagccgg gggtttttat ggctcaggac ttaaaaccgc cctgagagcc
     1741 tctgaggcgg tgcacgcaac ggatgttatg gtaaatccgg tggctttgac gtgcctgccg
     1801 ttgtgtaccg tcgtgagtga aaataattat attgttcgaa gaacagcgct ttttggccgg
     1861 agaaaagcag ttctgcaaac gatggtatat cgatatgagt tcttttggca ttaatccagg
     1921 caagacgccg ggcaataagc gtaatattcc ggatgttact tatttccatt tctgtcaaca
     1981 gcatcccccc ccacgccgga gaataaaaaa gccgcctgtt ccatcggcaa gccctacatc
     2041 aagggaaact acgtcttacg attcgttttg aaccgggacg ctttgttgct gcgaatcact
     2101 aaccagataa tccacgtttt gtgagtgggt ttaggttaag gcttcaatag aacaataata
     2161 gcgttaagtg attagggcaa cctgtgattg ctaaaatgat gaagtcttca catcatttcg
     2221 gtgaaggcga tatgtgttac accacaaccc ggatttgaga gtcgcaaacc catattaggg
     2281 caaagaaagc ctaatgcccc cgtggtgggt acaccagaaa acggggagcg aagcgaccag
     2341 catcaggccg ttcgtatgct tcttcgattt tgtgggtgtt gcgccagacc ttggcaatca
     2401 cgcttcaccg caaccgctgc cttcactctc actttatcag gtacgttatt ggttaacgtg
     2461 agaccgggta gagccagctt ctttcccgag ctggtcaggt tcccaccgct tgcctgttta
     2521 tcctgccgga gtccggggcg tagacctgag agtcaaggtg cagatatggg tttaatgtcg
     2581 ttgaatggta ttaagctggt agtgacattc ctagccagcc ctgctaggat ttgattgtga
     2641 cgtctgatcc tggcaggtat ctgcaagaat tagagtactc aagccccgtg attctgtcac
     2701 ggggcttttg tacatctgga gcaagaaaat tcatgctcct atccgaaaat ccctaccgct
     2761 cgccgcagcc gaacgaccga gcgacgcgag tcagtgagcg aggaagcggc atttctccgg
     2821 ccttgcagaa tgcacgttca cgccgatgtt tccagatcgt agcgtacccg tttcagcgca
     2881 gtcagtaatt tttcgtggtc aaaattcaac tcacccgttt ttgtatcaac cagtcccgcg
     2941 tcaatcatca gaccagccgc cagaaacagt ctgtgattgc gttccctgcg gtttttctgc
     3001 cctgaaatcc gcgcctgaac cgcctttttc tgtgcggcat cccgttcctg caacgcgttt
     3061 ttttcagcgg ttgccagaac gtggagcagt cgtctttcag tctcactgag cgaagcttca
     3121 tcatccagca gatcgataat ctgccgttgc cgtgccgttt tttctcccag ctttctgatg
     3181 aaggctatgc gctttttaag ccattcgacg ttactgatcc gcatcgttta acttccccat
     3241 cccgatattt ccgacgggga aagtatataa cttgcggtca gaagtcgcat gacttatctt
     3301 tactcataat tctttaaatt agagtaaagc gcacttatat gtttctccct gcgggcagaa
//
