LOCUS       NZ_CP093464             2045 bp    DNA     circular CON 11-JUN-2024
DEFINITION  Klebsiella pneumoniae strain VA684 plasmid pVA684-2, complete
            sequence.
ACCESSION   NZ_CP093464
VERSION     NZ_CP093464.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26642722
            Assembly: GCF_030061645.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Marcoleta,A.E., Hormazabal,J.C. and Araya,P.
  TITLE     Complete genome sequencing and analysis of carbapenem-resistant
            Klebsiella pneumoniae isolated in Chile
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Marcoleta,A.E., Hormazabal,J.C. and Araya,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-MAR-2022) Biology, Grupo de Microbiologia Integrativa,
            Facultad de Ciencias, Universidad de Chile, Las Palmeras 3425 Nunoa,
            Santiago, RM 780000, Chile
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: unicycler v. 0.4.9b; Canu v. 2.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 195X
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030061645.1-RS_2024_06_11
            Annotation Date                   :: 06/11/2024 06:17:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,638
            CDSs (total)                      :: 5,516
            Genes (coding)                    :: 5,352
            CDSs (with protein)               :: 5,352
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 164
            CDSs (without protein)            :: 164
            Pseudo Genes (ambiguous residues) :: 0 of 164
            Pseudo Genes (frameshifted)       :: 63 of 164
            Pseudo Genes (incomplete)         :: 96 of 164
            Pseudo Genes (internal stop)      :: 36 of 164
            Pseudo Genes (multiple problems)  :: 28 of 164
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP093464.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="VA684"
                     /isolation_source="Isolated from catheter blood of an 15
                     years old female"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pVA684-2"
                     /geo_loc_name="Chile: Metropolitan Region"
                     /collection_date="2019-04-25"
                     /collected_by="Instituto de Salud Pblica de Chile"
     gene            1441..1782
                     /locus_tag="MO416_RS28130"
                     /old_locus_tag="MO416_28095"
     CDS             1441..1782
                     /locus_tag="MO416_RS28130"
                     /old_locus_tag="MO416_28095"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039819495.1"
                     /translation="MPLKGNGNKFINNGIGVHNEAQVSVELNDSTFENNKIGYLEGKLD
                     RIDELFKNETPELAKKELIEELSKAIKRGESEKAESIFEKFDFHKWIASGANIAKIVES
                     LASAMNIHS"
                     /name="hypothetical protein"
ORIGIN
        1 gcgcgcaccc ctcagacggg ctgtgcgcga ttttcccgcc tgaacctcaa aaccgcatgt
       61 cttaccccct gaaaacggct cagaatggcg ctgatgattt ctgaggctgt gaatcgttat
      121 gcagccggct gcctggcatc aggtttcggc ctgaattcaa acccaacccc aaaaaagagt
      181 atctttcgcc ttgcctaaaa cggtgaacgg gcgggcaatt tattgcgtaa ctgtgagacc
      241 ttgccggcgc agccggaaaa cccgctgtca gcacgttcag gaagggggtg atgtacaaat
      301 ggcacagagg atggaactga cgtaaaagtg acgtatgaac ttaaggagtg atgtaaaaat
      361 gacgcaaaag tgacgtataa gctgaaggag agatgtaatt ctgtagtctt ataccaggtg
      421 aatgcctgtc cagcatcagc ttctgtagtt tatctgtagt ctcatcttag cttttgtagt
      481 ctatctgtag tcggggagga taacccgttc atgcctgcat gaacgataca gtgaggaacg
      541 ctttttttgt cacgatctcc ccttaacctg cgtaaatcac ccaccatggt tgattatttt
      601 tcaacctcaa aatggtcata cacctaacgc agccgcgatt ttcatcgcaa ctgcatgaat
      661 taaaagaaaa aaaaggaaca tttcgttttc acgagtaata cccaggtatt aaaaatccac
      721 tgtaattaca tgaaaataaa gaaataaaga gtaataccgg ggtattactg gctggccacg
      781 gataaatttc ggcatgttca gggctgactt ttgttgtttg ttcacgttca gactctgtgt
      841 gacagtgctt atctcagcaa ggcagatatg acgcttcctc gcactgacag actccgctag
      901 tcagtactgc ggcgagcgtt gtcagcttag gtttggaaag gatggttttg atgtagatgc
      961 tttaaatgta caaaagcccc gtgacagaat cacagggctt cggtactcta attcttgcag
     1021 atacctgcca agatcagacg tagcaatcaa atcttagcag ggctggctag ccatgtcact
     1081 accagcttaa taccattcaa cgacattaaa atcatatctg caccttagac gctcaggtct
     1141 acgccccgga ctccggcagg ataaacaggc aaattggtgg gaacgtaact taaccgcgaa
     1201 agagttaggc tctaccccgt ctcgctgtac gataacaagc acctgataaa atgagcgact
     1261 aaggcagtag taagcggtgg cgtgtgattg caagaaagtc gaacacgaca cccacacaat
     1321 caagcccttg caaggtgaga cacacaagaa gagagcttga cgaaggtcgc tacgctcccc
     1381 gtggtcttat atacccacca cgggggcatt aggctaactt taaccaaaac tggaggaact
     1441 atgccgctaa aaggtaatgg aaataaattc attaacaacg gtatcggcgt tcacaacgaa
     1501 gcccaagtca gcgtggagct taatgattct acttttgaaa ataataaaat agggtactta
     1561 gagggtaagc tcgatcgcat agatgaactc ttcaaaaatg aaacgccgga actcgctaaa
     1621 aaagagttaa tagaagagct tagcaaggct ataaagcgtg gggagtcaga aaaagcagag
     1681 tctattttcg aaaaattcga ctttcacaag tggatagcct ctggcgctaa cattgcaaag
     1741 atcgttgagt cgctagcgtc tgctatgaac attcattcgt aacctttgta aatatactcg
     1801 aaccaaatac gccacaatac tcatattgaa atgcccgtca ggtaactttg ctttctgagc
     1861 ctgacggatt tcacgatcgt tgatatgcag gcccactcca caattaatgg cctcattacc
     1921 agacatataa acatcagctg acgaatctat actgtaccca atgccgcagc tttcagctgt
     1981 gcaattaatt attgaaatca tacccccccc acattgtctt tctgaattta ccataacgtc
     2041 tcatt
//
