LOCUS       NZ_CP093410             2228 bp    DNA     circular CON 26-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Agona strain R19.0144
            plasmid pR19.0144_2.2k, complete sequence.
ACCESSION   NZ_CP093410
VERSION     NZ_CP093410.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26567206
            Assembly: GCF_022670755.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Agona
  ORGANISM  Salmonella enterica subsp. enterica serovar Agona
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W., Hong,Y.P. and Teng,R.H.
  TITLE     Salmonella enterica serovar Agona and Infantis
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W., Hong,Y.P. and Teng,R.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-MAR-2022) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: flye v. 2.9
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 282x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022670755.1-RS_2024_05_26
            Annotation Date                   :: 05/26/2024 05:46:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,104
            CDSs (total)                      :: 4,984
            Genes (coding)                    :: 4,841
            CDSs (with protein)               :: 4,841
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 143
            CDSs (without protein)            :: 143
            Pseudo Genes (ambiguous residues) :: 0 of 143
            Pseudo Genes (frameshifted)       :: 43 of 143
            Pseudo Genes (incomplete)         :: 115 of 143
            Pseudo Genes (internal stop)      :: 17 of 143
            Pseudo Genes (multiple problems)  :: 27 of 143
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP093410.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Salmonella enterica subsp. enterica serovar
                     Agona"
                     /mol_type="genomic DNA"
                     /strain="R19.0144"
                     /serovar="Agona"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:58095"
                     /plasmid="pR19.0144_2.2k"
                     /geo_loc_name="Taiwan"
                     /collection_date="2019"
                     /collected_by="Centers for Disease Control, Taiwan"
     gene            7..996
                     /locus_tag="MOP55_RS25470"
                     /old_locus_tag="MOP55_25460"
     CDS             7..996
                     /locus_tag="MOP55_RS25470"
                     /old_locus_tag="MOP55_25460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_097289998.1"
                     /translation="MKNLELRYLTDYSPADKPWDEHRSISDDVGGIYLRAAGFERYGER
                     VASCSGILRFGWSTNTETGETRLRLRDARFCRVRHCPICQWRRSLMWQARFYQSLPKIV
                     AEHPDARWLFLTLTVRNCPVTELGDTLTAMNAAFQRLKDRKEFRNVLGWIRTTEVTRDR
                     DGNAHPHFHTLLMVPPSMLSGREYVKHTRWVELWRNCLRVEYDPNVDIRTVKPRKPKDG
                     ESLPCVVADALRGAVAETLKYSTKPADMTADPGWFLELTQQVYKRRFVAAGGALKDVLK
                     LERETNEDLLMVDDPADGQDDGSRLAFSWRVEAKKYRRDRTMDKPEQK"
                     /name="protein rep"
     Typing          complement(1203..1282)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.123"
                     /coverage="89.0"
                     /evalue="1.52e-20"
ORIGIN
        1 atgggcatga aaaatcttga gcttcggtac ctgacggatt attcccctgc ggacaaaccg
       61 tgggatgagc accggagtat ttccgacgat gtgggtggaa tttatctgcg agctgccgga
      121 tttgaacgtt acggcgaacg cgtggcttcc tgtagcggta ttctgcgctt cgggtggtca
      181 acaaacacgg agaccggcga aacgcgtttg cgattacgtg atgcgcgttt ctgtcgggtc
      241 aggcactgtc cgatttgcca gtggaggcgc tccctgatgt ggcaagcccg tttctatcag
      301 tccctgccga agatcgttgc ggaacatcct gatgcccgct ggctgttcct gactctgact
      361 gtccgcaact gtccggttac agaacttggc gacaccttga ccgcaatgaa tgcggccttc
      421 cagcgtctga aagatcgcaa agagtttcgc aatgtgctgg gctggatacg aactacagaa
      481 gtgactcgtg acagggatgg caacgcgcat ccccattttc acaccttgtt aatggttccc
      541 ccttcgatgt tgtccggtcg tgagtacgtg aagcataccc gctgggttga actgtggcgc
      601 aattgcctgc gtgtggagta tgacccgaac gtcgatatca ggacggtaaa gccacgtaag
      661 ccgaaggatg gcgaatcgct gccatgtgtg gtggcggatg cgttgcgcgg tgcagtggca
      721 gagacactca aatattccac gaagcctgcc gacatgacgg cggatcctgg ctggtttttg
      781 gaactgacgc agcaggtcta caaacggcgg tttgtggctg cgggtggggc actgaaagac
      841 gtgctgaagc tggaacggga gacgaacgag gatttgctga tggtcgacga tcctgcagac
      901 gggcaggatg acggatctcg tcttgcgttt tcatggcggg tggaggctaa aaagtatcgc
      961 cgcgatcgca caatggataa gccagaacag aaataacatc tcaaaatcga ttctaaggcc
     1021 tctaaaacgc gctcaggcgc gttttttcat tgcgctaacg caattccatc aattcgatgt
     1081 ctcattgcgt cagaggcgtt tttagcgcgc ctctgactca ttggctatca cggcaacaga
     1141 tttcgaaggt ttgccagaag cgcgcaatga tttttttaac gtgcatttgg cacggtgtcg
     1201 agggtgtcgg ggcgcagccc tgaccagggg taattgtgat agcgtcgcgt gcgacggtat
     1261 tacaattaca catcctgtcc cgaaaattcc cgccgtttct cggttttttg agcgtcgcag
     1321 accgcacgac aaacgaaacg aagtgaagtt tgtataagtg cgcacttcgt gggtttcccc
     1381 gaccgcaggt ttgtcgatcg cgtggcaggg ctacgcgacg aaaacggcaa aatgatttgc
     1441 tgtccggttg ccagaattca tccgcgcgtt aagtgcggat gcgcatttag tagtttctct
     1501 ccttcgtcgg gaaactgtgc gctcctgcgg agggcttaac ggcgcagaac tgccgacgct
     1561 ctgccagcgt tctggtgaaa aaatcgggac aagatacatg tttgtattcc cgccacacgg
     1621 tcggtaatcc aaactccacc aggtcagggc tgcgccccga caccccgcca acgccttacg
     1681 gcacgcgaaa aaattccgcg taccgctcgc cgttcccgaa ttcgtcaaac agaaaatcgc
     1741 ggggtcccgc gcctctggcg tgggttccga ttttgtgatt gacgacggca cgggaaaaac
     1801 actggggatg gtggttggtg tcacgcagtg aggccaacca cctgcaagac ggttttttgt
     1861 tgttcacaaa atcggggtga aagtctgtgg atgagatggg tgtaagtggg tggggttggg
     1921 aggttttggg ttgctgaaaa tcccgctcaa aattcaagca aatcacgcgc gcgatccttg
     1981 tatttatact taagggataa ctctgggatt ggtatttggc tctaggcctt gtcataactg
     2041 ggctgaacgg caatttgcgc ggaaatggtt ttgagtgtat tttggttctg cgcggtcaaa
     2101 aagtgacccc cgcaacgatg ggcgtcgttc gggggtatga ccacctgcag aaactggatt
     2161 cttgatgaga gtaacaggtg atatggcaat gataacacgt caatctagcc atcgcccaga
     2221 atggggtg
//
