LOCUS       NZ_CP093389             3176 bp    DNA     circular CON 26-MAY-2024
DEFINITION  Salmonella enterica strain P048595 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP093389
VERSION     NZ_CP093389.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26662412
            Assembly: GCF_022655645.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Guglielmino,C.J.D.
  TITLE     STm genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Guglielmino,C.J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2022) Royal Hobart Hospital, Tasmanian Health
            Service, 48 Liverpool Street, Hobart, Tasmania 7000, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: FEB-2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology :: Illumina MiniSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022655645.1-RS_2024_05_26
            Annotation Date                   :: 05/26/2024 05:26:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,841
            CDSs (total)                      :: 4,719
            Genes (coding)                    :: 4,580
            CDSs (with protein)               :: 4,580
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 64 of 139
            Pseudo Genes (incomplete)         :: 84 of 139
            Pseudo Genes (internal stop)      :: 29 of 139
            Pseudo Genes (multiple problems)  :: 33 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP093389.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="P048595"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed3"
                     /geo_loc_name="Australia: Tasmania"
                     /lat_lon="42 S 147 E"
                     /collection_date="2021"
                     /collected_by="THS"
     gene            95..418
                     /gene="mobA"
                     /locus_tag="MOQ57_RS24175"
                     /old_locus_tag="MOQ57_24175"
     CDS             95..418
                     /gene="mobA"
                     /locus_tag="MOQ57_RS24175"
                     /old_locus_tag="MOQ57_24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(667..1371)
                     /locus_tag="MOQ57_RS24180"
                     /old_locus_tag="MOQ57_24180"
     CDS             complement(667..1371)
                     /locus_tag="MOQ57_RS24180"
                     /old_locus_tag="MOQ57_24180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000805974.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="WP_021538977.1"
                     /translation="MKPWVKFPSKFVLDGRLKELLWTDDKVGKPSHKVAALKLYIALSM
                     RAESKEAFCHYIDTYITYYSAQATYEELSELTALSRSSISSGIDILERLGLLSVDKVRR
                     KNIYRFPGFDGSKDWCKMPCRALLSRDGKRIEAFHKLKLRSKIELYALKMFIYLCAVRD
                     NHSHYTSASFERINLQTSIPEADIPRTHAYLSGIGLIALVEKRKDGFGGMKKNPPNSYF
                     VTGHNDFFIGKR"
                     /name="winged helix-turn-helix domain-containing protein"
     gene            complement(2205..2318)
                     /locus_tag="MOQ57_RS24185"
                     /old_locus_tag="MOQ57_24185"
     CDS             complement(2205..2318)
                     /locus_tag="MOQ57_RS24185"
                     /old_locus_tag="MOQ57_24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071588254.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(2805..2999)
                     /locus_tag="MOQ57_RS24190"
                     /old_locus_tag="MOQ57_24190"
     CDS             complement(2805..2999)
                     /locus_tag="MOQ57_RS24190"
                     /old_locus_tag="MOQ57_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041644.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQATMCEKLHELA
                     EELQNSIQTRFEVENSTEI"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2..86
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.674"
                     /coverage="99.0"
                     /evalue="8.64e-33"
     Typing          3037..3176
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.416"
                     /coverage="98.0"
                     /evalue="1.45e-30"
     Typing          complement(2247..2776)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.6"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          96..415
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="1.42e-62"
ORIGIN
        1 gcaattgtta taccgcgcat acatgcacgc tattacaatt accctggtca gggcttcgcc
       61 ccgacacccc atgtcagata cggagccatg ttttatgaca aaacgaagtg gaagtaatac
      121 gcgcaggcgg gctatcagtc gccctgttcg tctgacggca gaagaagacc aggaaatcag
      181 aaaaagggct gctgaatgcg gcaagaccgt ttccggtttt ttacgggcgg cagctctcgg
      241 taagaaagtt aactcactga ctgatgatcg ggtactgaaa gaagttatga gactgggggc
      301 gttacagaaa aaactcttta tcgacggcaa gcgtgtcggg gacagagagt atgcggaggt
      361 gctgatcgct attacggagt atcaccgggc cctgttatcc aggcttatgg cagattagct
      421 tcccggagag aaactgtcga aaacagacgg tatgaacgcc gtaagccccc aaaccgatcg
      481 ccattcactt tcatgcatag ctatgcagtg agctgaaagc gatcctgacg catttttccg
      541 gtttaccccg gggaaaacat ctctttttgc ggtgtttgcg gcagaatcgc gttcagcgcg
      601 ttttagcggt gcgcgtaatg cgacgttatg gtaaatagcg atcatgttat ttgatgtttt
      661 tattgattat cgctttccta taaaaaagtc attatgacca gtaacaaagt aggaatttgg
      721 agggtttttc ttcatgccgc caaacccatc ttttcgtttc tctactaaag ctatgagtcc
      781 tatcccgctc aggtaggcat gcgtcctagg tatgtccgct tctggaatag aagtctgcaa
      841 gtttattctt tcaaatgaag cgcttgtata atgactgtga ttgtctcgaa cagcacataa
      901 gtagatgaac atctttagcg cataaagctc aatcttgctt cttaacttaa gtttatggaa
      961 tgcttcaatc cgtttgccat cacgagataa caacgctcta caaggcattt tgcaccagtc
     1021 cttcgaacca tcaaacccag ggaatcggta gatatttttt cgcctaactt tatctactga
     1081 taacagccca agtctctcta aaatatcaat gcctgatgat attgatgatc tgctcagggc
     1141 tgtcagttcc gagagttcct cataggtcgc ctgagctgaa taatatgtta tgtaggtatc
     1201 tatgtaatga cagaaagcct ctttactttc agctctcatg gacagcgcta tatacagttt
     1261 taaggctgcg accttatgtg acggttttcc taccttgtca tcagtccata aaagctcttt
     1321 taagcgtcca tctagtacga actttgaagg aaattttacc caaggcttca ttgttacccc
     1381 atgcgcattg caataaacag gattgataga aaggcgacaa gaaccgaaac cgccaagaca
     1441 agcggggtta gtttgtgaga gttgtctgat aagtatttga ttatcattat atatttatcg
     1501 gcttccatat aatttcctat ggtttcagtc tttttgatag gaaaatttaa gcacgtcttg
     1561 gcaatatcta tctagatata ggttagtctt taaaataaaa ttattccaat tttttctttt
     1621 aaaatcattt gcttgaagca aaattgaatc atctttttaa agtaatcaat agttcatgaa
     1681 agggattgta gaagatgtta tggcgctgag ggtgtggagc ataaaagatg ctctgtctgg
     1741 gtgtttttat agcgtatgaa ggaaattgat tattgagatg ctgacttaga tggcgcggct
     1801 ttagcggatc cgatttttaa ctggcgacag cttagtaacg acagacagtc tggtgattgc
     1861 ctgtctgtca ttgttgttca tttcaattca attcgcctaa ttagtacata tccaaaagcc
     1921 gtgtctgcgt acataacagt cgtcattgta attgccttat atggacgata gttgtgcgca
     1981 tattgctatg tttatgaaga ttgttagtta gttgacttat gcatcattga cagcgtatct
     2041 tccattggaa acgaaaaaac cgccttggca ggcggttttt cgaaggttct tagagttggc
     2101 gctctttgaa ccaaggtaac tggcttggag gagcgcagtc accaaaatct gttctttcag
     2161 tttagcctta acaggcgcat aacttcaaga caaactcctc taaatcagtt accagtggct
     2221 gctgccagtg gcgataagtc gtgtcttacc gggttggact caagacgata gttaccggat
     2281 aaggcgcagc ggtcgggctg aacggggggt tcgtgcacac agcccagctt ggagcgaacg
     2341 acctacaccg ggccgagata cctacagcgt gagctatgag aaagcgccac gcttcccgaa
     2401 gggagaaagg cggacaggta tccggtaaac ggcagggtcg gaacaggaga gcgcacgagg
     2461 gagcttccag ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg ccacctctga
     2521 cttgagcgtc gatttttgtg atgctcgtca ggggggcgga gcctatggaa aaacgcctgc
     2581 ggtgctggct tcttccggtg ctttgctttt tgctcacatg ttctttccgg ctttatcccc
     2641 tgattctgtg gataaccgta ttaccgcctt tgagtgcgct gacaccgctc gccgcagtcg
     2701 aacgaccgag cgtagcgagt cagtgagcga ggaagcggaa gagcgcctta tgtgacattt
     2761 tctccttacg ctctgttgtg ccgttcggca tcctgccctg agcgttatat ctctgtgcta
     2821 ttttctactt caaagcgtgt ctgtatgctg ttctggagtt cttctgcgag ttcgtgcagc
     2881 ttctcacaca tggtggcctg ctcgtcagca tcgagtgcgt ccagtttttc gagcagcgtc
     2941 aggctctggc tttttatgaa tcccgccatg ttgagtacag tttgctgctg cttgttcatc
     3001 tttctgtttt ctccgttctg tctgtcatct gcgtcgtgtg attatatcgc gcaccacttt
     3061 tggaccgtct taccgccggt attctgccga cggacatttc agtcagacaa cactgtcact
     3121 gccaaaaaac agcagtgctt tgttggtaat tcgaacttgc agacaggaca ggatgt
//
