LOCUS       NZ_CP093388             3910 bp    DNA     circular CON 26-MAY-2024
DEFINITION  Salmonella enterica strain P048595 plasmid unnamed2, complete
            sequence.
ACCESSION   NZ_CP093388
VERSION     NZ_CP093388.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26662412
            Assembly: GCF_022655645.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Guglielmino,C.J.D.
  TITLE     STm genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3910)
  AUTHORS   Guglielmino,C.J.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-MAR-2022) Royal Hobart Hospital, Tasmanian Health
            Service, 48 Liverpool Street, Hobart, Tasmania 7000, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: FEB-2022
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 20.0x
            Sequencing Technology :: Illumina MiniSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022655645.1-RS_2024_05_26
            Annotation Date                   :: 05/26/2024 05:26:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,841
            CDSs (total)                      :: 4,719
            Genes (coding)                    :: 4,580
            CDSs (with protein)               :: 4,580
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 139
            CDSs (without protein)            :: 139
            Pseudo Genes (ambiguous residues) :: 0 of 139
            Pseudo Genes (frameshifted)       :: 64 of 139
            Pseudo Genes (incomplete)         :: 84 of 139
            Pseudo Genes (internal stop)      :: 29 of 139
            Pseudo Genes (multiple problems)  :: 33 of 139
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP093388.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="P048595"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="unnamed2"
                     /geo_loc_name="Australia: Tasmania"
                     /lat_lon="42 S 147 E"
                     /collection_date="2021"
                     /collected_by="THS"
     gene            complement(join(3196..3910,1..842))
                     /locus_tag="MOQ57_RS24160"
                     /old_locus_tag="MOQ57_24160"
     CDS             complement(join(3196..3910,1..842))
                     /locus_tag="MOQ57_RS24160"
                     /old_locus_tag="MOQ57_24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_061390825.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPSGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSACSPELLLQYR
                     KVMKTVIQGEERLARLGDANPNALKEHKLLQNAKAKNESLSEWSRRIHEGTRYLDKLGR
                     DVISAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQESVLETAEREENEFRYKL
                     QQAESEWKEKYAAFQRTEGYKYVDPTGLDKYREREILAAVSLENTRQKVAEEISVARSQ
                     MLSLEPELNMSGDEKAQMRHELLAEMALEQQQQEEKALRIQQTWVREASRSNERDQDME
                     R"
                     /name="MobA/MobL family protein"
     gene            1014..1460
                     /locus_tag="MOQ57_RS24165"
                     /old_locus_tag="MOQ57_24165"
     CDS             1014..1460
                     /locus_tag="MOQ57_RS24165"
                     /old_locus_tag="MOQ57_24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_021537414.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWEKRGKELLAKDSA"
                     /name="conjugal transfer protein TraD"
     gene            complement(1721..2740)
                     /locus_tag="MOQ57_RS24170"
                     /old_locus_tag="MOQ57_24170"
     CDS             complement(1721..2740)
                     /locus_tag="MOQ57_RS24170"
                     /old_locus_tag="MOQ57_24170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001271364.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     Typing          complement(1966..2740)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(4..842)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.643"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3200..3909)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="99.0"
                     /evalue="1.05e-137"
ORIGIN
        1 cggtactgaa gcaataactc cggtgaacag gctgaacgaa caggctcaac tgccttgatt
       61 ttttgctttt gctcctgttc ctgctgaatg gcatttgcgg catctctggc ggtcttgagt
      121 tcccgctcag cattcctccg ttcctggatt gcaacaatct gctcaccatt gagactggcg
      181 gcctgaacgg ggccaagatg aacttccggc gtgcgattga taccctgttc tttcagagaa
      241 cgatgatcta cgcgcgactc gtgaccgtat cgcgcaaggt gctcattctg cacatctgcc
      301 cagcgggaac gcagcgcaac aagggcggct tttcgctctc cggctgtctg gggaatactc
      361 gctttttttg cgcctccccg ttctggtgat ttgctgttgg cacgtttaaa aaattgctgc
      421 ggatcgcgtt caataccatc attaatccgc tcgcaaaaca tgatatgcgc gtgtggctgt
      481 tcctttccgt cgattgcacc tgacggattg tggatcgcgt actggtaggc atggcgatcg
      541 ccaagttcct tttgcacgaa atcttcaaca agttctatcc gttgttcgcg tgtcagttca
      601 cgcggtaacg cgatctcaat ttcacggtac gcagtcccgt tttttcgttc aaattcatct
      661 gcggctttcc atagctctgc gggatttttc ttcgcccatg atggcatgtt accggatgac
      721 gaaaattcca gatcctcccg cgatttgtag ctcttatatt cgccggatct ggaaatgtaa
      781 tcagcatgtt ttaaggcact gccttttgct ccagctttga cagtgcaatg gtagcttgcc
      841 atctgccttt tagccctccg caggagcgca cagtttctcg acgaaggaga gaaactacta
      901 agtgcgcatc catgaattaa tcagggatga ttttacggtc tcacacgcag gcagacaagg
      961 tgatattatg cacaataaca actcacatta acggcaaaag tgcagaggta agaatgacaa
     1021 atcgtgaaga gtggttaagt gcaaaaattg cctacatcaa cggactgaaa tcaccgtcag
     1081 agcagcagag attacttgtg ttactggcag agaaaaaaaa ccgaacaacg acggatgaaa
     1141 aaacgttgtc cgcactgata cgggcagaaa aaaccgcaga gaaagcagcc gcagcaaaag
     1201 ccagggtaac ggcaatcata gcggcagaac ggaaggcagc cgcaagggca gaacgaaagg
     1261 cgcgggatca tgaactttac aaggccgcag gcctcatgat tgtggcagga ctggtggaca
     1321 gcaaaaccgg aaaaccaaag tttagtgctg ccgaactggt aggcgcactc gcaggaatcg
     1381 cagagctacc gcgcaaccat cccaaatggc aggaatggga aaaacgcggg aaagagctac
     1441 tcgccaaaga cagtgcgtaa gagcctccgt tcacgttccg gttccctggt gcttcctcgc
     1501 tcattcgctc gctacgctcg gtcatgagac tgcggcgagc acgaccacct caatcatgcg
     1561 gtaagccgca ccattgctgg gctgagagga gaaaaccgcc ggaaagcccg ctgctcaaaa
     1621 agacgccgaa aggcgctgtt atctgatata ggcttgttca tgtccgcgaa tttaaccaac
     1681 cattaacaaa aaacgggggg tagtgttgct tatttgttaa ctaacattta attatttgtt
     1741 tcttggttag ccattctcca gaattatcca tccagcgtcg aatagtccgg ctgctaacac
     1801 caaccgccac tgcaatatct tccgttgacg ctcccaagat atacatatca agcgccctac
     1861 gacgtttgtc gtcgttagca gtccaccgaa cagcggcgct ttttttccct ttgtccgact
     1921 gattttctga cgaattggcc ttcccgccct tgcgaccgcg tgctgcctga atttctggcg
     1981 tgtgcgtatc agccacatac tgtgcgaaag tttccggcgt gaagttcctg tgcgtgtatt
     2041 tcgcaatgct cttgccaata gcccgacatt cagccagtga aagcggaacg ggaagcgatg
     2101 cattgtacat ttcgacacgc tggatcaccg cttcaagcca ctgtgagaac gctggccagc
     2161 cctgacgaat cgccctgtaa gcccatttgc gcgtcatttc gaacaggtgg cagtttcgcc
     2221 ccatcccgta atgtttatcg atgctacgac gctctgaggc gctcaaatcg agataatctg
     2281 ccagttcatc gagggtatag gcgtcctcgc gccactccat cacctgccat tccaggtgga
     2341 acggattttt gcaaatcagg ccgctgtagt tcacatcagc acaaagtttc tcacacagcg
     2401 aacgttcaac cgctgcggca tatttcagcg ccttaaccga ggcatcaggc gcggttctca
     2461 cggcgatgtt gagtgcgtag agcaggtgag cgtgtccgtt cacaggattt ttaacggtga
     2521 tgttcggcgc gggggcgttc cggtcgctcc agtcaatcgc agccccctcg cggtcaacgt
     2581 caaaaaccag ccagaactgc gcatgaggct ggttctgctg gatgtaccgc gcaagaagcg
     2641 cacgcccttt gccggagatg cgaaggccga aagcgagatc atccgtgtga taggggcggt
     2701 ggggtaaatt ttcttcgaag tattgaagcg cggcgctcat gtgttacgat tccttccagg
     2761 ttatcgaccg acctcgcccc tgtattctcg tgacaatctt ggcggagaga cacgaatttc
     2821 aggggcgttt gtttttcagt cgcttacact acccccaaca acaaaacctg tcgagccttc
     2881 ccgcaaaacc gatccattta ccataactcc cgttgtgcgc cccccttaaa acgctctcag
     2941 acgctttctg acgcaaaaaa cgcagaaata caaggaaaca ccaggaagaa ccagaaaaac
     3001 gcggcagaat tgtttttagg aggctgcata actattcacg aaagcaatgc gcgatctgtt
     3061 tcgagcgttc agaagggcga acgggtcaaa acagcaaact ttctcatcag aaaacggtga
     3121 acgggacgcg gaattttttc gcgttccgtg aaacgttggc ggggttcggg gcgcagtccc
     3181 gatattgcta cattttcaac gctccatatc ttgatcacgt tcgttactac gagatgcctc
     3241 tctgacccag gtttgctgta tacgcagcgc tttttcttcc tgttgctgct gttccaacgc
     3301 catttctgcc agtaactcat gtcgcatttg agctttttca tctccagaca tattaagttc
     3361 aggctccaga gataacatct ggctacgggc aacggatatt tcttcggcaa ctttttgcct
     3421 ggtgttctct aaagagactg cggccagaat ctcacgttct ctgtacttgt ccagccccgt
     3481 aggatcaacg tacttatatc cctcggtacg ctgaaaagca gcgtatttct ctttccactc
     3541 ggactcagct tgctgtagct tgtacctgaa ctcattctct tcacgttcgg cggtttccag
     3601 cacgctttct tgctccagaa tacgcgcatc aatctccctt ttgtcagccc cccgaaacag
     3661 gccacgaatc ccattcagag cattgcgttg ttcctgtaac tctcgtagct ccctttgtgc
     3721 ggaaataaca tcacgcccaa gtttgtctaa ataccgagtc ccttcatgta ttcgtctact
     3781 ccattcggaa agagattcgt ttttagcttt cgcattctga agcagcttat gttctttgag
     3841 cgcattggga ttggcatccc ctaaacgagc aagcctttcc tctccctgaa tgaccgtttt
     3901 cataaccttg
//
