LOCUS       NZ_CP092792             3305 bp    DNA     circular CON 23-MAY-2024
DEFINITION  Klebsiella pneumoniae strain XH1508 plasmid pXH1508-6, complete
            sequence.
ACCESSION   NZ_CP092792
VERSION     NZ_CP092792.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN26270981
            Assembly: GCF_022533505.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3305)
  AUTHORS   Hua,X. and Yu,Y.
  TITLE     The genome sequence of Klebsiella pneumoniae XH1507 and XH1508
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3305)
  AUTHORS   Hua,X. and Yu,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-FEB-2022) Sir Run Run Shaw Hospital, Zhejiang
            University, Qingchundong 3 RD, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.48
            Assembly Name                     :: XH1507
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 300x
            Sequencing Technology :: Illumina; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022533505.1-RS_2024_05_23
            Annotation Date                   :: 05/23/2024 06:11:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,985
            CDSs (total)                      :: 5,864
            Genes (coding)                    :: 5,679
            CDSs (with protein)               :: 5,679
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 185
            CDSs (without protein)            :: 185
            Pseudo Genes (ambiguous residues) :: 0 of 185
            Pseudo Genes (frameshifted)       :: 67 of 185
            Pseudo Genes (incomplete)         :: 125 of 185
            Pseudo Genes (internal stop)      :: 25 of 185
            Pseudo Genes (multiple problems)  :: 32 of 185
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP092792.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3305
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="XH1508"
                     /isolation_source="pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pXH1508-6"
                     /geo_loc_name="China:Hangzhou"
                     /lat_lon="30.3 N 120.2 E"
                     /collection_date="2019-05-10"
                     /collected_by="Xiaoting Hua"
     gene            join(3304..3305,1..421)
                     /locus_tag="ML259_RS29780"
                     /old_locus_tag="ML259_29780"
     CDS             join(3304..3305,1..421)
                     /locus_tag="ML259_RS29780"
                     /old_locus_tag="ML259_29780"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570825.1"
                     /translation="MKLKFIPIFLFIVTLQAAHSSGIGSTPPPQGKVIYTMNCTFVDDT
                     GKAIGKSQKYILRKGGDGREQMEITPQENAHVPPPIYIQKTSGAYTNGGFKTFYWNNTV
                     RMTVIRGDKTTVEIEFIDSPAISIAKATCDNPVYLP"
                     /name="hypothetical protein"
     gene            complement(688..1218)
                     /locus_tag="ML259_RS29785"
                     /old_locus_tag="ML259_29785"
     CDS             complement(688..1218)
                     /locus_tag="ML259_RS29785"
                     /old_locus_tag="ML259_29785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570822.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDIAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTELKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(1221..2156)
                     /locus_tag="ML259_RS29790"
                     /old_locus_tag="ML259_29790"
     CDS             complement(1221..2156)
                     /locus_tag="ML259_RS29790"
                     /old_locus_tag="ML259_29790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_033570823.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKAQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            2323..2709
                     /locus_tag="ML259_RS29795"
                     /old_locus_tag="ML259_29795"
     CDS             2323..2709
                     /locus_tag="ML259_RS29795"
                     /old_locus_tag="ML259_29795"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570824.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETDRR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHKLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     Typing          complement(1225..2156)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.498"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaagctaaaa ttcataccta tttttttatt tatcgttacg ttacaagccg ctcattccag
       61 tggaattggt agcacgcccc cccctcaagg gaaggtgata tacacaatga attgcacttt
      121 tgtcgatgat accggtaagg ctattggtaa gtcgcaaaaa tacatcctgc gaaagggggg
      181 ggatggtcgt gagcaaatgg agataactcc acaagaaaac gcacatgtcc ccccccccat
      241 atacatacaa aaaacaagtg gtgcttacac caatggtggg ttcaaaacct tctactggaa
      301 caatacagta cggatgaccg tgatcagggg cgataaaacc actgtggaaa tagagtttat
      361 tgattcccct gcgatttcga tagcgaaagc cacatgcgac aatcctgttt atttaccata
      421 acgcgtcatt acgcgcaccg ctcagacgcg ctcagggcgg ttttacgccc tgagccataa
      481 aaacccccgt tttctcaccg aaaaccgccc agaatcgcat accgtgactt tcagccccat
      541 gcataaccat gcacctgact gactggcgag aacttccggc ctgaattcag gccggaagtc
      601 tcaaaagacg ccccaaaccc ggctgaaaac ggtgaacggg tgcgcaattt attgtgcgaa
      661 cgtgaggcgt tggacaagcg cagcgcgtca gttctttttc ttttccggtt tcagttccgt
      721 tgtcagcagc ttttcaaggt ctgccacttt ctgatagacg gcagcagacg cgttgtaatt
      781 gtcctgtagt tccgttttca caaaccagct tgtggcaaat atcagtacga caaaggcaac
      841 cgcaacccca gcaaaccact tccagctgta accccgcagc gtgttgtact ccgcgatgat
      901 gttactgcgg ataatggaaa tttccttgtc cagcgcgtcc gcattgattt tcatgttccc
      961 gacggatttt tccagacgct gaaaatcagc gctgatacgc tcgccgatca gccccgcaat
     1021 atccattttc tgcacttcct gccggacttc atcccgaacc tgctgcgcca cactgtccga
     1081 tatttcccgg tagcctttca gggtttccct tgccaccgcc agcgaatccg ccacggcttt
     1141 ctgctgctct tttgcggcct ctttcagatg ctccgccgac agcaggagcg tgagaagttt
     1201 ttcttcggtg ctcgccatag ttacctgctt atggaaaatc cgcgtgacag ggatttcacg
     1261 cgctctattt caacatttcc ctgttttgtg acccgtgcag ccatctcccg cccgtactgc
     1321 tgcgagatat catgcgtcag agatctgacc agttccttcc ggtttacctc gataccgctg
     1381 gcattcatcc agctacggtc gctgtggtcg atatgcttcg cctgttcagg cacatccacg
     1441 actgaaaacg tccggctgtc tttaatatcc tgcctctggc tgtcgtccag tcgtccggct
     1501 gcttcaaaac cgagatgctg ttccggtttc cggtcgatac cctgtgcttt cagtgaccgg
     1561 ctatcaataa aaccctgctc aaagccatat cgtttcatat gcgcgttgtg cgtacgctcc
     1621 cagcgctccc gcagggcttt cagtgcctgt ttttgttctg taggggttaa attatgccct
     1681 gagtccttgc gcgcgccgcc acgcgccgga aatttggcgt tatagcgcct gaaatactgt
     1741 tcgggactgc gctcaatacc gtcattgacg cgctggctca tcatgatatg ggcgtgcggc
     1801 tgttcgccgc cgtcaatgct ggctttcgga ttgtggatcg caaacgtcca tgcatgtttg
     1861 tcgcccgttt cctgcttcac aaaatcccgg acaagcgcca gccgctgcgc ttcattcagc
     1921 tcgcggggga gggcgatctc aatttccctg tacgttgaac cgttggcacg ttcgaacgca
     1981 tccgcagcct gccagaaatg ggcgggttca tctctcgccc attccggcat gttgccgtgt
     2041 tcggtgtgct cgagatcctg gcgctggctg aacttatctt cccgcgtgat gtaactggca
     2101 tgagcaaggg ctttaccctt gccgccaaat ttcacactga gatgatacgt tgccatgttg
     2161 tgtcagcccc cggcagggcg cactgtttct gcccgcaggg agaaacatat aagtgcgctt
     2221 tactctaatt taaagaatta tgagtaaaga taagtcatgc gacttctaac cgcaagttat
     2281 atactttccc cgtcggaaat atcgggatgg ggaagttaaa cgatgcggat cagtaacgtc
     2341 gaatggctta aaaagcgcat agccttcatc agaaagctgg gagaaaaaac ggcacggcaa
     2401 cggcagatta tcgatctgct ggatgatgaa gcttcgctca gtgaaactga cagacgactg
     2461 ctccacgttc tggcaaccgc tgaaaaaaac gcgttgcagg aacgggatgc cgcacagaaa
     2521 aaggcggttc aggcgcggat ttcagggcag aaaaaccgca gggaacgcaa tcacaaacta
     2581 tttctggcgg ctggtctgat gattgacgcg ggactggttg atacaaaaac gggtgagttg
     2641 aattttgacc acgaaaaatt actgactgcg ctgaaacggg tacgctacga tctggaaaca
     2701 tcggcgtgaa cgtgcattct gcaagggcgg agaaatgccg cttcctcgct cactgactcg
     2761 ctacgctcgg tcgttcggct gcggcgagcg gtagggattt tcggatagga gcatgaattt
     2821 tcttgctcca gatgtacaaa agccccgtga cagaatcaca gggcttcggt actctaattc
     2881 ttcgcagata cctgccagga tcagacgtag caatccaatc ctagcagggc tggctagcct
     2941 tgtcactacc agcttaatac cattcaacga cattaaactc atatctgcac cttagacgct
     3001 caggtctacg ccccggactc cggcaggata aacaggcaaa cggtggaaac gtaacttaac
     3061 cgcgaaagag ttaagctcta ccccgtctcg cagtacgata actggcacct gataaaatga
     3121 gcgaacaagg cagcggtaag cggcgaagtg tgattgctaa ggtctgacac ttcacccaca
     3181 caatcaagcc ccttgcaggg tgagagacac aagaaacgag ctggacgaag gtcgctctgc
     3241 tccccgtgat ttttatatac ccaccacggg ggcattaggc tttttttgca acggagacac
     3301 tacgt
//
