LOCUS       NZ_CP092013             4593 bp    DNA     circular CON 03-JUN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain N12-0259
            plasmid pN12-0259-a, complete sequence.
ACCESSION   NZ_CP092013
VERSION     NZ_CP092013.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25644135
            Assembly: GCF_022936485.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Biggel,M.
  TITLE     Genomic analyses of human S. enterica Kentucky from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50x, 65x
            Sequencing Technology :: Illumina MiniSeq, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022936485.1-RS_2024_06_03
            Annotation Date                   :: 06/03/2024 03:16:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,725
            CDSs (total)                      :: 4,603
            Genes (coding)                    :: 4,487
            CDSs (with protein)               :: 4,487
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 38 of 116
            Pseudo Genes (incomplete)         :: 85 of 116
            Pseudo Genes (internal stop)      :: 21 of 116
            Pseudo Genes (multiple problems)  :: 25 of 116
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP092013.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="N12-0259"
                     /serovar="Kentucky"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pN12-0259-a"
                     /geo_loc_name="Switzerland"
                     /collection_date="2012"
                     /collected_by="NENT, University of Zurich"
     gene            complement(242..565)
                     /locus_tag="MA624_RS23585"
                     /old_locus_tag="MA624_23580"
     CDS             complement(242..565)
                     /locus_tag="MA624_RS23585"
                     /old_locus_tag="MA624_23580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            628..819
                     /locus_tag="MA624_RS23590"
                     /old_locus_tag="MA624_23585"
     CDS             628..819
                     /locus_tag="MA624_RS23590"
                     /old_locus_tag="MA624_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1489..1638
                     /locus_tag="MA624_RS23700"
     CDS             1489..1638
                     /locus_tag="MA624_RS23700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            1830..2669
                     /locus_tag="MA624_RS23595"
                     /old_locus_tag="MA624_23590"
     CDS             1830..2669
                     /locus_tag="MA624_RS23595"
                     /old_locus_tag="MA624_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(3357..3590)
                     /locus_tag="MA624_RS23600"
                     /old_locus_tag="MA624_23595"
     CDS             complement(3357..3590)
                     /locus_tag="MA624_RS23600"
                     /old_locus_tag="MA624_23595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3597..4157)
                     /locus_tag="MA624_RS23605"
                     /old_locus_tag="MA624_23600"
     CDS             complement(3597..4157)
                     /locus_tag="MA624_RS23605"
                     /old_locus_tag="MA624_23600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(908..992)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          1003..1558
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(246..598)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="83.051"
                     /coverage="100.0"
                     /evalue="1e-57"
     Typing          complement(3260..4593)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 accgggcata agaacacgct caaagctcgt catcactctt tcgcgttcac ccggcggtaa
       61 ctccttctcc gcgaacgaca gaacgcctga cgtgtatttc ttcgaaaatg gcgtggcatc
      121 aatgagttcc cggatttctt ccgggttacc ccggagcacc gttgcgcctt cgcggttacg
      181 ctcccgcccc agcaggtaat cgaccgggcc acttccaccg cctttccccc tggcatgaaa
      241 tttaactatc atcccgtccc ccctgttccc tgacagcctg ccgcaactgg cgcaattcac
      301 cctcgatggc catcagagcg gccaccacat gaacccggtc aatcgaagac cagtggccgc
      361 tgttcacctt ccgggctgtc tggttcagat tgttcccgat ggcagccaga tgccgcagca
      421 atggcggcga tagtgtcggc agttttcctg tgcgcgcaac cggctccccc agacagaccc
      481 gccgcatcca ttctgccagt cgtttaccct cgcagcgttc cagtaaccgg gcgtgctcct
      541 catcgctaac ccgtatcgtg agcatcttct cgcgtttcat cggtatcatt ccccctaaaa
      601 aatcccctat taaggagcct taagaccatg accaaacagg aaaaaacagc ccttaacatg
      661 gcccgcttta tcagaagcca gacgctgacc ctgctggaaa aactcaacga gctggacgcg
      721 gacgaacagg cagacatctg cgaatcactt cacgaccacg ccgacgaact ctaccgtagt
      781 tgcctcgcac gcttcggcga tgacggtgaa agcaactgaa acatgcagct cccggagacg
      841 ttcacagctt gcctgtgagc ggatgccggg agcagacaag cccgtcaggg cgcgtcagcg
      901 ggttttagcg ggtgtcgggg cgcagccctg acccagtcac gtagcgatag cggagtgtat
      961 actggcttaa ctatgtggca tcagtgcgga ttataagaaa agtgcaccat atgcggtgtg
     1021 aaataccgca cagatgcgta aggagaaaat gccgcatcag gcgctcttcc gcttcctcgc
     1081 tcactgactc gctacgctcg gtcgttcggc tgcggcgagc ggtatcagct cactcaaaga
     1141 cggtgatgcg gttatccaca gaatcagggg ataacgccaa aagaaacatg tgagcaaaag
     1201 gccaggaaca ggaagaaggc cgcgccgctg gcgtttttcc ataggctccg cccccctgac
     1261 gagcatcaca aaaacagatg ctcaagtcag aggtggcgaa acccgacagg actataaaga
     1321 taccaggcgt ttccccctgg aagctccctc gtgcgctctc ctgttccgac cctgccgctt
     1381 accggatacc tgtccgcctt tctcccttcg ggaagcgtgg cgctttctca tagctcacgc
     1441 tgttggtatc tcggcccggt gtaggtcgtt cgctccaagc tgggctgtgt gcacgaaccc
     1501 cccgttcagc ccgaccgctg cgccttatcc ggtaactatc gtcttgagtc caacccggaa
     1561 agacacgtaa aaacgccact ggcagcagcc attggtaacc gtttagagga gttagtcttg
     1621 aagttatgcg ccggttaagg ctaaactgaa aggacagatt tggtggctgt gctcctccaa
     1681 gccagttacc ttggttcaaa gagttgctgc tctgagaacc ttcgaaaagc cgccttgctg
     1741 ggcggttttt tcgtttacgg acaagactac cttcaggatc gttagatctc aagacaatca
     1801 tgcatagtga gcatacacag gagccgaact tgcttacact gttcatcttt tttgttttat
     1861 taatagctgc atgtttcttt tgttttgctc caccacgaag aggatatgac agaaatgaga
     1921 tcattccata caaaataaaa ctatcaataa ataaatatcg cctttacata tactcatcgg
     1981 gaaaggtaag acaatacctt ttatttttag ttattttatc actgtactac tccatagcgg
     2041 aaccatttaa gtctgagtta ataaaaaaca tatcatattc actgatggct gcatttattt
     2101 ttgatacagg gcttaatttt agcaaggaga atataactaa aggagtgatt tcaacaaggt
     2161 ggcataatga cctatattca tcatttgaga gaatgaaagc aattaataaa atttactacc
     2221 catccaacaa agagataaac acagaaggtc tatccaaagc catcacatca tctcttttca
     2281 atgatgacgc gaactcgttc gcaaagagag attttcgctt gatgtgggac ttatcttctg
     2341 aaaaatatct ttcctataaa gaaataataa taagaaaagg cgataagctt gacgctgtat
     2401 gcttgagatt tataaatgat gactacaagt ttttagttaa tttcaacaga gatgaagagg
     2461 ttttcaaata ctttccatct ataatgcaac cttcactcaa aacatataga gcgttatcaa
     2521 gactagtaaa ctcaatcaaa gatccttcta gatttaagtt cacgacagag tcattagaaa
     2581 tggagttact agaatactta gagttaagaa atgaattatt caatgacata gaagaagtaa
     2641 tgggtagcta tgctcagagg gcaccatagt tcatgatagc cctcgatagt acttacttat
     2701 atttttagag aggtttaagt gtaagtagag ggagtaacac ctggtttttc agcatccact
     2761 ccaatgaatg ctgacaccga tacgcgataa ttctctttat cgtagcaaaa tcatcctcca
     2821 gattgcggtt gagaataggt tcatggtgcg caatacgatt gcgcagtttt ctcacgggac
     2881 ttgttagcag taatgcttcc ccccggggac aaacgacaga gatatacaac aaaggcccgc
     2941 aattaaaata ctccgtattt accataacgt cgcattgcgc gtaccgctta aacgcgttca
     3001 gcgcgatcac ggcagcagac aggtaaaaac agcaacaaac cacccgaaaa actgccgcga
     3061 tcgcgcctgg taaattttaa cctcatgcat agttatgcgc gaaactgaat gacgatcagt
     3121 ttcgcacgtt ccagccgtcg aacggggcaa aatggggagg tttggatatt gttaatgcta
     3181 atgtacgtac attaacattg gcgccatccg ggtagggcgt gccacaaact ggctcgattt
     3241 cagggggtac cccggtcaca tccccattga cgggccacgc cagatccgcg cttcgggttc
     3301 ctgctcttca tgccagcgcc gggcaagctc ctgcgcctga cgctcctgtt catcccttat
     3361 ctgttgttcg tgataaataa ccgactcaag cggtcgactt gtccggctaa tagctgcacc
     3421 tgctgactca agttcacgac acgctcgttc agtatcgcgt tgttctgttg cgtaaccgcg
     3481 tgcatcttct gcaattctgc gaaggcgctc tcccactcgt tcagccgccg catatagtcc
     3541 tgttgcaaat gctctaaggc gttcagcaaa tgcccttcca gttccgtcat actcgtttac
     3601 tccctgacca gcctcacggc gttcttgtcg cccaccgtcc aggtgttttc ccctttcacc
     3661 ccgtccggca gcaccagaaa tttcccgttc tcgccattga cgaacgtcac cccccaggtt
     3721 tttgcctcga gtttcgccag cgtgttttcc tgctctctga tggtcaagat atttttcgca
     3781 atcctgcttt cctgccactg aatcagcccc cagcacccca ggaaaatgcc gcccgtgacg
     3841 ctgagcgcgg tcagcgccgg aaacagtacc cgccctttga tcacctgcca gagcaggttt
     3901 ttctgctgcc gggacagttc ggcctctgtg gtgctgagct gcgtgctcac ggtggtgctc
     3961 agcgtatcca gttgctgttt cacggatgtt gtatgttcgc tgatagcgtc tctgattttc
     4021 tgcctgttta agctcagtgc cttgtctaca gactcttcta gcttcctgaa ctcgctgttc
     4081 agcatgttct cggtagaagc ggctcgctct ttcagtttct tctcgaagtc cgttcccatt
     4141 tgtaaaagat tgctcataca gcgccccctt tagcctgaga ttccgccccc cctccgggtc
     4201 ggcaatactg atactgcttc tggttgtcct caccacctca aaacctgccg ctgtgagcgc
     4261 ctcagtgaca tcctgacgcg tttttattgc tccggcacgg taaagcgcct caagaccccg
     4321 tgtaatcgct tctgcggcct cctgtttcgc ttttggcaga ttattcggtg tgacaagcgt
     4381 ccgtctgttc tccggtgcgt tcgggtcacg cagcccgtaa tgatgattaa ccagcgtctg
     4441 ccaggcattt atcctcggcc tgtccgcacg gtcgtagtac ggctggaggc gcttaccgct
     4501 ctgtagttcc atgttcggaa tgacaaaatt cagttcgagc cgccccttat cctggtgttc
     4561 cacccagaga atgctgtact ggtctttttc gag
//
