LOCUS       NZ_CP092002             4820 bp    DNA     circular CON 03-JUN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky strain N16-1393
            plasmid pN16-1393-c, complete sequence.
ACCESSION   NZ_CP092002
VERSION     NZ_CP092002.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25644119
            Assembly: GCF_022936365.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Biggel,M.
  TITLE     Genomic analyses of human S. enterica Kentucky from Switzerland
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4820)
  AUTHORS   Biggel,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-FEB-2022) Institute for Food Safety and Hygiene,
            University of Zurich, Winterthurerstrasse 272, Zurich 8057,
            Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 50x, 75x
            Sequencing Technology :: Illumina MiniSeq, Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022936365.1-RS_2024_06_03
            Annotation Date                   :: 06/03/2024 03:16:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,675
            CDSs (total)                      :: 4,553
            Genes (coding)                    :: 4,443
            CDSs (with protein)               :: 4,443
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 35 of 110
            Pseudo Genes (incomplete)         :: 81 of 110
            Pseudo Genes (internal stop)      :: 21 of 110
            Pseudo Genes (multiple problems)  :: 24 of 110
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP092002.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky"
                     /mol_type="genomic DNA"
                     /strain="N16-1393"
                     /serovar="Kentucky"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:192955"
                     /plasmid="pN16-1393-c"
                     /geo_loc_name="Switzerland"
                     /collection_date="2016"
                     /collected_by="NENT, University of Zurich"
     gene            join(4487..4820,1..593)
                     /locus_tag="MA802_RS23305"
                     /old_locus_tag="MA802_23300"
     CDS             join(4487..4820,1..593)
                     /locus_tag="MA802_RS23305"
                     /old_locus_tag="MA802_23300"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_031612481.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKGEYAKRKDLEYTEHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTPEQRLELVLDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIDRTPEQYFRRYNARYPERGGAKKDSGNLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERHPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            596..1129
                     /locus_tag="MA802_RS23310"
                     /old_locus_tag="MA802_23305"
     CDS             596..1129
                     /locus_tag="MA802_RS23310"
                     /old_locus_tag="MA802_23305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_075814658.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQRLDIAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFSVLGWGMKTILDRNYNATAAVYQKVVTLED
                     KLAEKTVTGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1245..2126)
                     /locus_tag="MA802_RS23315"
                     /old_locus_tag="MA802_23310"
     CDS             complement(1245..2126)
                     /locus_tag="MA802_RS23315"
                     /old_locus_tag="MA802_23310"
                     /inference="COORDINATES: protein motif:HMM:NF012239.4"
                     /GO_function="GO:0005525 - GTP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="WP_031612478.1"
                     /translation="MEYIDKSTLNSKEKIRQAIEKKIREIKGYTPRVGIFGSTGVGKSS
                     LCNALFGRDVAPVSNVAACTREIQEIHIKPEDGNEGGLTIIDFPGVGETLERDKEYYNL
                     YKENVAKLDLVVWVIKSDERAYAISQKVYNDILLPNIKKCPVVFFINQIDKIEPTEDDE
                     GELLWDKKKNEPTKEQLASVNEKILEVSTAFSVPASYIIPTSVKRKFNISKAMETIIDI
                     LPKEKKYALYREAGEEIKTEKMAESAEKGVWDTIKEWTGEAWDNVKDVVVEVVAATVVA
                     AGKKILSKLKFW"
                     /name="GTPase"
     gene            2784..3719
                     /locus_tag="MA802_RS23320"
                     /old_locus_tag="MA802_23315"
     CDS             2784..3719
                     /locus_tag="MA802_RS23320"
                     /old_locus_tag="MA802_23315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011666805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_050954902.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDRVGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDSSVKA
                     LKYAAAIERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDKRFMAL
                     CMLENGYSQKAIAAMLEVSTRTIRNWKSGK"
                     /name="replication initiation protein"
     gene            complement(3913..4311)
                     /locus_tag="MA802_RS23325"
                     /old_locus_tag="MA802_23320"
     CDS             complement(3913..4311)
                     /locus_tag="MA802_RS23325"
                     /old_locus_tag="MA802_23320"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001560793.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKELKYDLETSPNPDA"
                     /name="hypothetical protein"
     Typing          2785..3719
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.158"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          4..590
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.449"
                     /coverage="99.0"
                     /evalue="3.75e-124"
     Typing          4488..4819
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.892"
                     /coverage="99.0"
                     /evalue="2.68e-61"
ORIGIN
        1 cgagcattga cggaggcgaa cagcctcatg cgcatatcat gatgagccag cgtgtgaatg
       61 atggcattga ccgtacaccg gaacagtatt tccggcgcta taacgctagg tatcccgagc
      121 ggggaggtgc gaaaaaggat tccggaaacc tgactctcac tcagcaaaaa gagcagttga
      181 gggaattgcg aaaacgctgg gaggtgaagc acaacgaaca tatgagaaag catggctttg
      241 aaaggggctt cattgactgc cggacgctga aagaacaggg cattgaacgg catcccgaag
      301 tgcatctggg ttttgaagct gccggacggc ttgatgatgc ccagcgtcat gacatcatgc
      361 aaaaacggtc tgaaccggac tattcccgcc atcttgaaca ggcgcgaacg gtcgggcatg
      421 acatcaggga atggctggac actccggtta agcaacatga actggtcaga aggctacaac
      481 atgatgttgc gcgggagcat ggctttgaca tgagagacag agtgagcaga cagaaccgaa
      541 ctgaacctga acgggttaaa tcaccgtcac gtggattttc tatgggattc tgaacatggc
      601 cagcacagaa gaaaaattac tcacgctcct gttatcggtg gagcatctgc aacataccgc
      661 aatggagcaa cagaaagctg ttgctgattc tctggctgtg gcaagggaaa cacttcgcgg
      721 atatcgggat atttctgacg gtgtggcaaa acaggtcagg gatgaagtca gaaacgaagt
      781 gcagaggctg gatattgcag ggctgatagg tgagcgcatc agtcaggatt ttcagcggct
      841 ggaagagtca gtcgcaaaca tgaaggcaaa cgcggatgcc ctgaacaggg atattgcgac
      901 aattcacagc aatatcgtgc aggaatacaa cacccttaaa gggtatagct ggaaatggct
      961 gggtggggtg tcagtggcct ttctggttat gttcagtgtg ctcggatggg ggatgaaaac
     1021 aattctcgac aggaactaca acgccacagc ggcggtgtat cagaaagttg tgacactgga
     1081 agataaactg gcggagaaaa ctgtcacggg taagagccgg aaaaactgac gcgctctgtg
     1141 aggtgtttga attgttcgct gttcacatcg gataaaacag atcttggaaa aagaaacgtt
     1201 gataactaag attcaggata gtaatcatcc tgaatcttaa tgaattacca gaatttaagt
     1261 tttgatagta ttttcttacc tgcagcaaca acagttgcag ctactacttc aacaactaca
     1321 tcctttacgt tatcccaggc ttcacctgtc cattctttaa tggtgtccca tacgcccttt
     1381 tctgcgcttt ctgccatttt ttctgttttt atttcttctc ctgcttcgcg atagagagca
     1441 tattttttct cctttgggag gatgtctatt attgtctcca ttgctttaga aatattaaac
     1501 tttcttttga ctgatgtagg tataatgtat gaagcaggaa cagaaaaggc agtacttact
     1561 tctagtattt tctcatttac actagctaac tgctcttttg tcggctcgtt tttcttttta
     1621 tcccaaagaa gttcaccttc atcgtcttct gttggttcta ttttatctat ttggtttatg
     1681 aaaaatacaa caggacattt ttttatatta ggtagcaata tatcgttata taccttttga
     1741 gaaattgcgt aagccctttc atcagacttt attacccata caactaggtc taactttgca
     1801 acattctctt tgtatagatt ataatattct ttgtctcttt ccaaggtttc accaacacca
     1861 ggaaagtcta ttatcgtaag tcctccctca tttccatctt ctggcttgat atgaatttct
     1921 tgaatctctc ttgtgcaagc agcgacgtta ctgactgggg ctacatcacg accaaataat
     1981 gcattgcata atgatgattt acctacgcca gttgatccaa aaataccgac tcgtggcgtg
     2041 taacctttta tttcccttat tttcttttcg attgcttgtc taattttttc tttgctgttt
     2101 agtgtcgatt tatcaatata ttccatttta agaacctata ttgtcaagaa atattactta
     2161 taaataaacc acctatttta taagtggtat tttattgtat tcgataaatg ttatctagag
     2221 ctgtgttcag gttgttgtga gactaaacct tttaagcgat ttcctaaaaa ggtggggtac
     2281 atggagctca gaaaacaaac tatcccaaga ctgtttttta gtcatgttgc tttggagaga
     2341 gggcgggatg aactatggca attattgtgt ctgatgctga tatcgaactg ttttatccat
     2401 ctatgcaagg atatggatga gaaaatttgc tgttttgacc cattcgccct tctgaacggt
     2461 tgaaactgtt cgcgaatcac ttttgtgcat agttatgcag ccccataaaa ataattctga
     2521 cgcatttttc ggggttgccc tggtgtttcc ttgtattttt gcgttttttg cgtcagaaag
     2581 cgattgagag cgttttaagg ggttcgtaca acaggagtta tggtaaatgg atcgtttttg
     2641 cgggaaggct cgacaggttt tgttgttggg ggtagtgtaa gcgactgaaa aacaaacgcc
     2701 cctgaaattc gtgtctatcc gccaagactt tcacgaaaat acaggggcga tgtcggtcga
     2761 taacctggaa ggaatcgtaa cacatgagcg ccgcgcttca atacttcgaa gaaaatttac
     2821 cccaccgtcc ctatcacacg gatgatctcg cttttggtct tcgcatctcc ggcaaagggc
     2881 gtgcgcttct tgcgcggtac atccagcaga accagcctca tgcgcagttc tggctggttt
     2941 ttgacgttga ccgtgtagga gctgcgattg actggagcga ccggaacgct cccgcgccga
     3001 acatcaccgt aaaaaatcct gtgaacggtc atgctcacct gctctacgca ctcaatatcg
     3061 ccgtgagaac cgcgccggac agctcggtta aggcgctgaa atacgccgct gcgattgaac
     3121 gttcgctgtg tgagaaactt tgtgcagatg tgaactacag cggactgatt tgcaaaaatc
     3181 cgttccacct ggaatggcag gtgatggagt ggcgcgagga ggcctatacc ctcgatgaac
     3241 tggctgatta tctcgatttg agcgcctcag cgcgccgtag catcgataaa cattacggga
     3301 tggggcgaaa ctgccatctg ttcgaaatga cgcgcaaatg ggcttacagg gcgattcgtc
     3361 agggttggcc agcattctca cagtggcttg atgccgtgat tcagcgtgtc gaaatgtaca
     3421 acgcatcgct tcccgttccg ctttctccgc ctgaatgtcg ggctattggc aagagcattg
     3481 cgaaatacac gcacaggaac ttcacgccgg aaactttcgc acagtatgtg gctgatacgc
     3541 acacaccaga aatacaggcc aagagaggcc ggaaaggtgg tatcgctaaa ggcgaagcct
     3601 acgatgacaa gcgtttcatg gcgctatgta tgctggagaa tggatattct cagaaagcta
     3661 ttgcggcgat gttggaggtt tctactcgaa ccattcgaaa ctggaaaagc ggaaaatagc
     3721 ctatatcaga taacagcgtc tttttggcgt gtttttgagc agcaggtttt ttgtcgtttt
     3781 tcaccgttca gccttgcaat ggtgctgttt tccgcatgat tgtgctggta gtgctcgccg
     3841 cagtctcatg accgagcgta gcgagcgaat gagcgaggaa gcaccaggga atcggaacac
     3901 ggatggaggc acttacgcgt ctgggtttgg ggatgtctcc agatcgtact taagttcctt
     3961 aagtgcctgt aatatcctgt cttttttata gcatagctcg cctgtttttg tgtctaccag
     4021 tcctgcttcg atcagtagcc cagccgcgag aaagagccgg tgattgcgtt ctcgtcgttg
     4081 tttttttccc tcgattcgtt tttggaccgc ctgttttcgt tcgctctcct gtgcctgtaa
     4141 gtcgtttttt tccgctgttg ccagtacgtg gaggagtttg cgttcctgtt ctgtgagtcc
     4201 tgcttcgttg tcgagcaggt caataatctg tctctgtcgt gcggtctgtt ctccgagctt
     4261 cctgatgaat ccgatccgtt tcttcagcca ttcgatgttg ctgatgcgca tgttcgtggt
     4321 gctccttggt gttttttgcg gtgtgttgtg gtcgtgcagt atatcgcttg cggtcggtgg
     4381 gtgcaggggg gtatcttcct tctaattcgt aaaattagaa ggaagcgcac ttatatgttt
     4441 ctctccttcg tcgagaaaca gtgcgctcct gcggagggct gaaaccgtgg caacctatca
     4501 cctcagcgtt aaatttggag gcaagggaca ggctgcaaac cacgccgatt acatcgagcg
     4561 caaaggggag tatgcgaaac ggaaagatct ggaatacacg gagcacggaa acatgccgga
     4621 atgggccagg gataatcctt cccatttctg gcaggcggct gaccagtttg aacgagcgaa
     4681 cggttcgact tatcgggaac tggaaatcgc gctgccccgt gaactgacac cggaacagcg
     4741 ccttgagctg gtgctggatt ttgtacgtca ggaagccggc gaacggcacg cctggagttt
     4801 tgccattcac aatccgaaag
//
