LOCUS       NZ_CP091642             3172 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Salmonella enterica strain 965 plasmid p965-2, complete sequence.
ACCESSION   NZ_CP091642
VERSION     NZ_CP091642.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270670
            Assembly: GCF_026873525.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 14:25:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,747
            CDSs (total)                      :: 4,632
            Genes (coding)                    :: 4,500
            CDSs (with protein)               :: 4,500
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 46 of 132
            Pseudo Genes (incomplete)         :: 95 of 132
            Pseudo Genes (internal stop)      :: 31 of 132
            Pseudo Genes (multiple problems)  :: 36 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091642.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="965"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p965-2"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2020-06"
                     /collected_by="Meina Yue"
     gene            complement(5..400)
                     /locus_tag="L5503_RS23710"
                     /old_locus_tag="L5503_23720"
     CDS             complement(5..400)
                     /locus_tag="L5503_RS23710"
                     /old_locus_tag="L5503_23720"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            579..1532
                     /locus_tag="L5503_RS23715"
                     /old_locus_tag="L5503_23725"
     CDS             579..1532
                     /locus_tag="L5503_RS23715"
                     /old_locus_tag="L5503_23725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     gene            1544..2074
                     /locus_tag="L5503_RS23720"
                     /old_locus_tag="L5503_23730"
     CDS             1544..2074
                     /locus_tag="L5503_RS23720"
                     /old_locus_tag="L5503_23730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     Typing          580..1529
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggaattaatg atgatctggg cttgtttcaa gatcgagcct gattgcctta agtttctgta
       61 atatattgtc ttttgggtat ctcagttcgc ctgtttttgt gtccactagt ccggcctcga
      121 tcagtaaccc cgccgcaaga aacaggcggt gattgcgttc ccgtcgttgt gttttcccct
      181 ccatccgttt ttggttggcc tgtttgcgtg cgttctcctg tgcctgtagc tcgttttttt
      241 ctgcggttgc caggacgtgg agtagtttgc gctcctgttc tgttagtccg gcttcgttat
      301 cgagcaggtc aatgatctgc ctctgtcgtg cggtctgttc tccgagcttc ctgataaagc
      361 cgattcgttt cttcaaccag tcgatgttgc tgatgcgcat gtttgggatg ctccctggtg
      421 ttttttgcgg tgtgttgggg ttgtgcagta tatcgcttgc ggtcggtggg tgcagggggt
      481 atcttccgtg ctaattcgta aaattagaag gaagcgcact tatatgtttc ttcgccgttg
      541 gctcagaaac atgtgcgctc ctgcggaggg ctaacaccgt ggcaacctat cacctcaatg
      601 taaaatttgg cggcaaggga caggccggaa accatgccga ttacatcgaa cgcaaaggcg
      661 agtacgagaa acgaaaagat ctggaatact cagagcacgg gaatatgcca ggctgggcgc
      721 gagataatcc ctcccatttc tggcaagcgg ctgatcagtt tgaacgtgcg aatggttcga
      781 cttatcggga gatcgaaatc gccttgccgc gtgaactgac accggatcag cgcattgaac
      841 tggtgcagga ttttgtgcgt caggtagctg gagaacggca cgcctatagc tttgccattc
      901 acaatccaaa agcgagcatt gacggagggg aacagcctca tgcgcatatc atgatgagcc
      961 agcgtattaa cgatggtatg gaacgttcgc cggaacagta tttccggcgt tataacgcca
     1021 agaatcccga acggggaggc gcaaaaaaag attcaggcaa tctgacaccg actcagcaaa
     1081 aagagcaatt gcggacgtta cgggcgagct ggtcagcgtt acagaacgag catttagcgc
     1141 gtcatggtca cagggtgcgc gttgaccatc gctcactgga agaacgcgga attaaacgca
     1201 caccagaacg gcatttcgga tttgccgcct catcacggct tgatcatgcg cagcgccgcg
     1261 aaatcctgca aaaccgagcg cagccgctcg aacattttct agagaaagcg cattcggttc
     1321 gtcatcaatt tgatgcacaa gttcagcaaa aagagttagt taaaacgctt ttacaggacg
     1381 tcgcacggga gcgagggcac gcgcttacgg caagaataaa taaaacaggt gaagttgaat
     1441 ttgaacgtgc gccaacgcgg acgcggagta acacgcgagg gcacggcatg ggcattcgtg
     1501 acaactcacg cgggtacgac tacgaacgtt aaaaggggac tgtatggcga gtacagaaga
     1561 ggggttgctc acgctcttgt tgtccgttga gcatttgaaa aacactgcga tagaacaaca
     1621 gaaagcggtt gcagacacgc tggcggtcgc aagggaaaca ctgcgggggt atcgggatat
     1681 ttctgacagt gttgtaaaac aggttagcga tgaagtcaga aaaggggtac agaaaacgga
     1741 cattgcgggg ctgatgggtg agcgcatgac ccaggatttt cagcgtcttg aagagactgt
     1801 ggcaaagatg agagccaacg cggaggcgct taacaaggac attgcgacaa ttcatcacaa
     1861 tgttgttaaa gaatacaaca cgctcaataa atacagtctg aaatggttta tcggtgttac
     1921 ggtcagtttt ctggtcatgt tctcgttgct tggctggttt accaaaacgt tgatcgacag
     1981 gaactacacc gcgacggagg tcgtgtatca gaaaattgtt gatattgaaa agaaactgga
     2041 caaaccagca atagggaaga gccggaaaaa ctgacgcgct tcgcttgtcc aacgcctcac
     2101 gggacgcgaa aaaattccgc gtcccgttca ccgttttctg atgagaaagt ttgctgtttt
     2161 gacccgttcg cccttctgaa cgctcgaaac agatcgcgca ttgctttcgt gaatagttat
     2221 gcaggctcat gaaaacgatt ctgacgcgtt ttttgaggta ggggtggggg aaagcatggt
     2281 tttttgatgt tttgagcgta aaagcgtgaa aaatcgcgtt attgtgcttg cgatctttcg
     2341 tcagggagcg tagaacgaaa aaagcccgcc gttaggcgag cttcttcggg ttcattgagg
     2401 ttttcgacct cctcaatgtt cctgtggagt ctgttgcggc gacaacggaa accagttcat
     2461 tcagtttgca tgaaccttct gtattcttca agcattaccg accgcacagc ctccccagaa
     2521 tcccgaaaaa atcctgtttt tgcagatgat tgcgtgtttg caaagaccgt ttgcggttgg
     2581 gggagctgtg acgacggcaa ccgcacgcgt gagagttccg ctaccggcgc agagagtttc
     2641 atcgacagcg gacacctgat gagttgccac aaaaaccgta tgtagcgcgg ctagattggt
     2701 tgagttagac cttggcggca gttcccggta tgtggtggcg tgacgggtga gatggtgcgg
     2761 cgaagacgca tacgtcacgc aggcgcgggt tcttccaccg acgcgccccg tgatcgatgg
     2821 ccttggctcc gtccggcata tcgagagcgg caaactaccc gtcccttcac tgggaggggt
     2881 gagttgttgc cgttccctcc gaccttccac catccagcat atcgcacgat cccatgagca
     2941 ccgcaacaac tgataactcc agagcaaaaa aaaaaaagga tctgcatcat gtgagagtga
     3001 tcccaccgct cgccgcagcc ccagcgaccg aacgtagtga gcgagtgggc gaggaagcgg
     3061 aagtgaaccg gaaaccacat tgagcacgta cgcacctatg ccagatccgc gcgtagcgcg
     3121 tcgcgaaatc gaaaacattg aacaccggca ggcaaacgca ccaccacgca gc
//
