LOCUS       NZ_CP091639             3172 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Salmonella enterica strain 1063 plasmid p1063-4, complete sequence.
ACCESSION   NZ_CP091639
VERSION     NZ_CP091639.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270671
            Assembly: GCF_026873505.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3172)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 14:03:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,822
            CDSs (total)                      :: 4,707
            Genes (coding)                    :: 4,571
            CDSs (with protein)               :: 4,571
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 136
            CDSs (without protein)            :: 136
            Pseudo Genes (ambiguous residues) :: 0 of 136
            Pseudo Genes (frameshifted)       :: 45 of 136
            Pseudo Genes (incomplete)         :: 100 of 136
            Pseudo Genes (internal stop)      :: 31 of 136
            Pseudo Genes (multiple problems)  :: 36 of 136
            Pseudo Genes (short protein)      :: 1 of 136
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091639.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1063"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p1063-4"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2020-07"
                     /collected_by="Meina Yue"
     gene            join(2739..3172,1..97)
                     /locus_tag="L5504_RS24080"
                     /old_locus_tag="L5504_24085"
     CDS             join(2739..3172,1..97)
                     /locus_tag="L5504_RS24080"
                     /old_locus_tag="L5504_24085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_140018423.1"
                     /translation="MASTEEGLLTLLLSVEHLKNTAIEQQKAVADTLAVARETLRGYRD
                     ISDSVVKQVSDEVRKGVQKTDIAGLMGERMTQDFQRLEETVAKMRANAEALNKDIATIH
                     HNVVKEYNTLNKYSLKWFIGVTVSFLVMFSLLGWFTKTLIDRNYTATEVVYQKIVDIEK
                     KLDKPAIGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1200..1595)
                     /locus_tag="L5504_RS24085"
                     /old_locus_tag="L5504_24090"
     CDS             complement(1200..1595)
                     /locus_tag="L5504_RS24085"
                     /old_locus_tag="L5504_24090"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     gene            1774..2727
                     /locus_tag="L5504_RS24090"
                     /old_locus_tag="L5504_24095"
     CDS             1774..2727
                     /locus_tag="L5504_RS24090"
                     /old_locus_tag="L5504_24095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001360358.1"
                     /translation="MATYHLNVKFGGKGQAGNHADYIERKGEYEKRKDLEYSEHGNMPG
                     WARDNPSHFWQAADQFERANGSTYREIEIALPRELTPDQRIELVQDFVRQVAGERHAYS
                     FAIHNPKASIDGGEQPHAHIMMSQRINDGMERSPEQYFRRYNAKNPERGGAKKDSGNLT
                     PTQQKEQLRTLRASWSALQNEHLARHGHRVRVDHRSLEERGIKRTPERHFGFAASSRLD
                     HAQRREILQNRAQPLEHFLEKAHSVRHQFDAQVQQKELVKTLLQDVARERGHALTARIN
                     KTGEVEFERAPTRTRSNTRGHGMGIRDNSRGYDYER"
                     /name="MobA/MobL family protein"
     Typing          1775..2724
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.685"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 caggaactac accgcgacgg aggtcgtgta tcagaaaatt gttgatattg aaaagaaact
       61 ggacaaacca gcaataggga agagccggaa aaactgacgc gcttcgcttg tccaacgcct
      121 cacgggacgc gaaaaaattc cgcgtcccgt tcaccgtttt ctgatgagaa agtttgctgt
      181 tttgacccgt tcgcccttct gaacgctcga aacagatcgc gcattgcttt cgtgaatagt
      241 tatgcaggct catgaaaacg attctgacgc gttttttgag gtaggggtgg gggaaagcat
      301 ggttttttga tgttttgagc gtaaaagcgt gaaaaatcgc gttattgtgc ttgcgatctt
      361 tcgtcaggga gcgtagaacg aaaaaagccc gccgttaggc gagcttcttc gggttcattg
      421 aggttttcga cctcctcaat gttcctgtgg agtctgttgc ggcgacaacg gaaaccagtt
      481 cattcagttt gcatgaacct tctgtattct tcaagcatta ccgaccgcac agcctcccca
      541 gaatcccgaa aaaatcctgt ttttgcagat gattgcgtgt ttgcaaagac cgtttgcggt
      601 tgggggagct gtgacgacgg caaccgcacg cgtgagagtt ccgctaccgg cgcagagagt
      661 ttcatcgaca gcggacacct gatgagttgc cacaaaaacc gtatgtagcg cggctagatt
      721 ggttgagtta gaccttggcg gcagttcccg gtatgtggtg gcgtgacggg tgagatggtg
      781 cggcgaagac gcatacgtca cgcaggcgcg ggttcttcca ccgacgcgcc ccgtgatcga
      841 tggccttggc tccgtccggc atatcgagag cggcaaacta cccgtccctt cactgggagg
      901 ggtgagttgt tgccgttccc tccgaccttc caccatccag catatcgcac gatcccatga
      961 gcaccgcaac aactgataac tccagagcaa aaaaaaaaaa ggatctgcat catgtgagag
     1021 tgatcccacc gctcgccgca gccccagcga ccgaacgtag tgagcgagtg ggcgaggaag
     1081 cggaagtgaa ccggaaacca cattgagcac gtacgcacct atgccagatc cgcgcgtagc
     1141 gcgtcgcgaa atcgaaaaca ttgaacaccg gcaggcaaac gcaccaccac gcagcggaat
     1201 taatgatgat ctgggcttgt ttcaagatcg agcctgattg ccttaagttt ctgtaatata
     1261 ttgtcttttg ggtatctcag ttcgcctgtt tttgtgtcca ctagtccggc ctcgatcagt
     1321 aaccccgccg caagaaacag gcggtgattg cgttcccgtc gttgtgtttt cccctccatc
     1381 cgtttttggt tggcctgttt gcgtgcgttc tcctgtgcct gtagctcgtt tttttctgcg
     1441 gttgccagga cgtggagtag tttgcgctcc tgttctgtta gtccggcttc gttatcgagc
     1501 aggtcaatga tctgcctctg tcgtgcggtc tgttctccga gcttcctgat aaagccgatt
     1561 cgtttcttca accagtcgat gttgctgatg cgcatgtttg ggatgctccc tggtgttttt
     1621 tgcggtgtgt tggggttgtg cagtatatcg cttgcggtcg gtgggtgcag ggggtatctt
     1681 ccgtgctaat tcgtaaaatt agaaggaagc gcacttatat gtttcttcgc cgttggctca
     1741 gaaacatgtg cgctcctgcg gagggctaac accgtggcaa cctatcacct caatgtaaaa
     1801 tttggcggca agggacaggc cggaaaccat gccgattaca tcgaacgcaa aggcgagtac
     1861 gagaaacgaa aagatctgga atactcagag cacgggaata tgccaggctg ggcgcgagat
     1921 aatccctccc atttctggca agcggctgat cagtttgaac gtgcgaatgg ttcgacttat
     1981 cgggagatcg aaatcgcctt gccgcgtgaa ctgacaccgg atcagcgcat tgaactggtg
     2041 caggattttg tgcgtcaggt agctggagaa cggcacgcct atagctttgc cattcacaat
     2101 ccaaaagcga gcattgacgg aggggaacag cctcatgcgc atatcatgat gagccagcgt
     2161 attaacgatg gtatggaacg ttcgccggaa cagtatttcc ggcgttataa cgccaagaat
     2221 cccgaacggg gaggcgcaaa aaaagattca ggcaatctga caccgactca gcaaaaagag
     2281 caattgcgga cgttacgggc gagctggtca gcgttacaga acgagcattt agcgcgtcat
     2341 ggtcacaggg tgcgcgttga ccatcgctca ctggaagaac gcggaattaa acgcacacca
     2401 gaacggcatt tcggatttgc cgcctcatca cggcttgatc atgcgcagcg ccgcgaaatc
     2461 ctgcaaaacc gagcgcagcc gctcgaacat tttctagaga aagcgcattc ggttcgtcat
     2521 caatttgatg cacaagttca gcaaaaagag ttagttaaaa cgcttttaca ggacgtcgca
     2581 cgggagcgag ggcacgcgct tacggcaaga ataaataaaa caggtgaagt tgaatttgaa
     2641 cgtgcgccaa cgcggacgcg gagtaacacg cgagggcacg gcatgggcat tcgtgacaac
     2701 tcacgcgggt acgactacga acgttaaaag gggactgtat ggcgagtaca gaagaggggt
     2761 tgctcacgct cttgttgtcc gttgagcatt tgaaaaacac tgcgatagaa caacagaaag
     2821 cggttgcaga cacgctggcg gtcgcaaggg aaacactgcg ggggtatcgg gatatttctg
     2881 acagtgttgt aaaacaggtt agcgatgaag tcagaaaagg ggtacagaaa acggacattg
     2941 cggggctgat gggtgagcgc atgacccagg attttcagcg tcttgaagag actgtggcaa
     3001 agatgagagc caacgcggag gcgcttaaca aggacattgc gacaattcat cacaatgttg
     3061 ttaaagaata caacacgctc aataaataca gtctgaaatg gtttatcggt gttacggtca
     3121 gttttctggt catgttctcg ttgcttggct ggtttaccaa aacgttgatc ga
//
