LOCUS       NZ_CP091621             3135 bp    DNA     circular CON 28-JAN-2024
DEFINITION  Salmonella enterica strain 1473 plasmid p1473-2, complete sequence.
ACCESSION   NZ_CP091621
VERSION     NZ_CP091621.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270677
            Assembly: GCF_026873385.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3135)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3135)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/28/2024 13:37:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,629
            CDSs (total)                      :: 4,514
            Genes (coding)                    :: 4,402
            CDSs (with protein)               :: 4,402
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 112
            CDSs (without protein)            :: 112
            Pseudo Genes (ambiguous residues) :: 0 of 112
            Pseudo Genes (frameshifted)       :: 42 of 112
            Pseudo Genes (incomplete)         :: 81 of 112
            Pseudo Genes (internal stop)      :: 26 of 112
            Pseudo Genes (multiple problems)  :: 34 of 112
            Pseudo Genes (short protein)      :: 1 of 112
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091621.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3135
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1473"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p1473-2"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021-05"
                     /collected_by="Meina Yue"
     gene            complement(667..1200)
                     /locus_tag="L5510_RS23130"
                     /old_locus_tag="L5510_23140"
     CDS             complement(667..1200)
                     /locus_tag="L5510_RS23130"
                     /old_locus_tag="L5510_23140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142595565.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGWVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPATGKSRKN"
                     /name="hypothetical protein"
     gene            complement(1203..2129)
                     /locus_tag="L5510_RS23135"
                     /old_locus_tag="L5510_23145"
     CDS             complement(1203..2129)
                     /locus_tag="L5510_RS23135"
                     /old_locus_tag="L5510_23145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001314449.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            2305..2700
                     /locus_tag="L5510_RS23140"
                     /old_locus_tag="L5510_23150"
     CDS             2305..2700
                     /locus_tag="L5510_RS23140"
                     /old_locus_tag="L5510_23150"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          complement(1207..2129)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.052"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgccaccaca taccgggaac tgccgccaag gtctaactca accaatctag ccgcgctaca
       61 tacggttttt gtggcaactc atcaggtgtc cgctgtcgat gaaactctct gcgccggtag
      121 cggaactctc acgcgtgcgg ttgccgtcgt cacagctccc ccaaccgcaa acggtctttg
      181 caaacacgca atcatctgca aaaacaggat tttttcggga ttctggggag gctgtgcggt
      241 cggtaatgct tgaagaatac agaaggttca tgcaaactga atgaactggt ttccgttgtc
      301 gccgcaacag actccacagg aacattgagg aggtcgaaaa cctcaatgaa cccgaagaag
      361 ctcgcctaac ggcgggcttt tttcgttcta cgctccctga cgaaagatcg caagcacaat
      421 aacgcgattt ttcacgcttt tacgctcaaa acatcaaaaa accatgcttt cccccacccc
      481 tacctcaaaa aacgcgtcag aaacgtttcc aggggcttgc ataactattc acaaaagtga
      541 ttcggaatca atttcgccaa atctgagcac cgaacgggtc aaaacggcaa actttctcat
      601 cagaaaacgg tgaacgggac gcggaatttt ttcgcgtccc gtgaggcgtt ggacaagcga
      661 agcgcgtcag tttttccggc tcttccctgt tgctggtttc tccgccagtt tatcttccag
      721 tgtcacaact ttctgataca ccgccgctgt ggcgttgtag ttcctgtcga gcattgtttt
      781 cattccccat ccaagcacac agaacataac cagaaaagcc actgacaccc aacccagcca
      841 tttccagcta taccctttaa gggtgttgta ttcctgcacg atattgctgt gaattgtcgc
      901 aatatccctg ttcagggcat ccgcgtttgc cttcatgttt gcgactgact cttccagccg
      961 ctgaaaatcc tggctgatgc gctcacctat cagccctgca acatccagct tctgcacctc
     1021 gtttctgact tcatccctga cctgttttgc cacaccgtca gaaatatccc gatatccgcg
     1081 aagtgtttcc cttgccacag ccagagaatc agcaacagct ttctgttgct ccattgcggt
     1141 atgttgcaga tgctccaccg ataacaggag cgtgagtaat ttttcttctg tgctggccat
     1201 gttcagaatc ccatagaaaa tccacgtgac ggtgatttaa cccgttcagg ttcagttcgg
     1261 ttctgtctgc tcactctgtc tctcatgtca aagccatgct cccgcgcaac atcatgttgc
     1321 agccttctga ccagttcatg ttgcttaacc ggagtgtcca gccattccct gatgtcatgc
     1381 ccgaccgttc gcgcctgttc aagatggcgg gaatagtccg gttcagaccg tttttgcatg
     1441 atgtcatgac gctgggcatc atcaagccgt ccggcagctt caaaacccag atgcacttcg
     1501 ggacgtcgtt caatgccctg ttctttcagc gtccggcagt caatgaagcc cctttcaaag
     1561 ccatgctttc tcatatgttc gttgtgcttc acctcccagc gttttcgcaa ttcccgcaac
     1621 tgctcttttt gctgagtgag agtcaggctt ccggaatcct ttttcgcacc tccccgctcg
     1681 ggatacctgg cgttatagcg ccggaaatac tgttccggtg tacgttcaat gccatcattc
     1741 acacgctggc tcatcatgat atgcgcatga ggctgttcgc cgccgtcaat gctcgctttc
     1801 ggattgtgaa tggcaaaact ccaggcgtgc cgttcgccag cttcctgacg tacaaaatcc
     1861 tgcaccagtt caaggcgctg ttccgctgtc agttcacggg gtaatgcaat ttcaagttcc
     1921 cgataggtcg aaccgttcgc acgttcaaac tggtcagccg cctgccagaa atgtgaggga
     1981 ttatctcgcg cccattccgg catgtttccg tgtgcggaat attccaaatc ctgacggtcg
     2041 cggtatttct ctttgcgctc gatgtaatcg gcgtggtttg cagcctgccc cttgccacca
     2101 aatttaacgc tgaggtgata ggttgccacg gtttcagccc tccgcaggag cgcactgttt
     2161 ctcgacgaag gagagaaaca tataagtgcg cttccttcta attttacgaa ttagcacgga
     2221 agataccccc tgcacccacc gaccgcaagc gatatactgc acaaccccaa cacaccgcaa
     2281 aaaacaccag ggagcatccc aaacatgcgc atcagcaaca tcgactggtt gaagaaacga
     2341 atcggcttta tcaggaagct cggagaacag accgcacgac agaggcagat cattgacctg
     2401 ctcgataacg aagccggact aacagaacag gagcgcaaac tactccacgt cctggcaacc
     2461 gcagaaaaaa acgagctaca ggcacaggag aacgcacgca aacaggccaa ccaaaaacgg
     2521 atggagggga aaacacaacg acgggaacgc aatcaccgcc tgtttcttgc ggcggggtta
     2581 ctgatcgagg ccggactagt ggacacaaaa acaggcgaac tgagataccc aaaagacaat
     2641 atattacaga aacttaaggc aatcaggctc gatcttgaaa caagcccaga tcatcattaa
     2701 ttccgctgcg tggtggtgcg tttgcctgcc ggtgttcaat gttttcgatt tcgcgacgcg
     2761 ctacgcgcgg atctggcata ggtgcgtacg tgctcaatgt ggtttccggt tcacttccgc
     2821 ttcctcgccc actcgctcac tacgttcggt cgctggggct gcggcgagcg gtgggatcac
     2881 tctcacatga tgcagatcct tttttttttt gctctggagt tatcagttgt tgcggtgctc
     2941 atgggatcgt gcgatatgct ggatggtgga aggtcggagg gaacggcaac aactcacccc
     3001 tcccagtgaa gggacgggta gtttgccgct ctcgatatgc cggacggagc caaggccatc
     3061 gatcacgggg cgcgtcggtg gaagaacccg cgcctgcgtg acgtatgcgt cttcgccgca
     3121 ccatctcacc cgtca
//
