LOCUS       NZ_CP091614             4052 bp    DNA     circular CON 28-JAN-2024
DEFINITION  Salmonella enterica strain 1795 plasmid p1795-3, complete sequence.
ACCESSION   NZ_CP091614
VERSION     NZ_CP091614.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270679
            Assembly: GCF_026873345.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/28/2024 13:25:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,508
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,288
            CDSs (with protein)               :: 4,288
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 42 of 105
            Pseudo Genes (incomplete)         :: 74 of 105
            Pseudo Genes (internal stop)      :: 26 of 105
            Pseudo Genes (multiple problems)  :: 35 of 105
            Pseudo Genes (short protein)      :: 1 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091614.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1795"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p1795-3"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021-08"
                     /collected_by="Meina Yue"
     gene            join(3993..4052,1..399)
                     /locus_tag="L5512_RS22515"
                     /old_locus_tag="L5512_22530"
     CDS             join(3993..4052,1..399)
                     /locus_tag="L5512_RS22515"
                     /old_locus_tag="L5512_22530"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(907..1119)
                     /locus_tag="L5512_RS22520"
                     /old_locus_tag="L5512_22535"
     CDS             complement(907..1119)
                     /locus_tag="L5512_RS22520"
                     /old_locus_tag="L5512_22535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1123..1608)
                     /locus_tag="L5512_RS22525"
                     /old_locus_tag="L5512_22540"
     CDS             complement(1123..1608)
                     /locus_tag="L5512_RS22525"
                     /old_locus_tag="L5512_22540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<1646..2323)
                     /locus_tag="L5512_RS22580"
                     /pseudo=""
     CDS             complement(<1646..2323)
                     /locus_tag="L5512_RS22580"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2286..2627)
                     /locus_tag="L5512_RS22535"
                     /old_locus_tag="L5512_22550"
     CDS             complement(2286..2627)
                     /locus_tag="L5512_RS22535"
                     /old_locus_tag="L5512_22550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_085859042.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(2715..2894)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          2871..3357
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(792..2296)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcaatcaaag gcatcatagg gaagttagca agtaaacatc ctgaagttga acaacaagcc
       61 tcactgcttg aaacaccatt accttttgac gaagttgata aattattttc tcagatgcag
      121 ggggccattc aggctgcagc agccaatggt gaaattcagc tagatggagc tgaattaaaa
      181 gcattgagcg gaataaaatt tgatcaccaa gccggaactg ttttgataaa tggatctcaa
      241 gtacaagcgt caattttagt cactggtgga ggtcaacatg ctactggaaa aacgatcata
      301 caaggtgata cgacaatgac tagccagggt acaagtataa aaatgtcagg tggtgctcaa
      361 atagtaatga ctggtggagc ccgaatcatt cagaactaat atgatttacc ataacatctc
      421 ttgcccgcac cgctccggac atgttcgtca caaacggggc ggcagtcagg taaaaccggc
      481 aacaaaccac ccgatacacc gccccgttcg tgacagataa attttacccg gctgcatggt
      541 catgcagcca gatgcatacg gtctgatttc aggccagaat ctggatgaac gccttaaaaa
      601 caggaaaatg cttctccagc cagtcccaga tctccagcgc catgtacagg cagttcagca
      661 ccgtctcaat cacgttaaac agtctcataa tccctccgtt gtatacgccg tgatgttttc
      721 atcacgaccg tatttagcgg gaaatttatg agcccttctt cgtggggttt gtcactggtg
      781 aagcctgtca gcccagcgtc ggaccgttat agctccgctg acgggaacgg gcttccgcca
      841 gctctttttc gtgctgtcgc tgctcgtatg cccgttcggc ggccaccgcc atttcatgcc
      901 gctgcactac tggctcaaac gctgtaactg cctgctcaag ttcgccacct gctgactcaa
      961 gcgcgtgacg cgctcgttca gcgccgcgtt ctcccgttgc ataagaccag acatcttctg
     1021 ccattccgcg aaggcgctct cccactcgtc cagcctttgc gagtagtcct gatgtagctg
     1081 ctctaatgcg gtcagcaact gtttttccag ttccgtcatg ggctatttcc tctccagtac
     1141 catccagttc ccttcctccc cgtaagctcc cgctttcggg ttcactttga cgcaggacag
     1201 tttcttctcc ccgcagagcg acagctgaac gccgtggttt ttctccgaca acatggcctg
     1261 cgtccgctcc tgcgcccgga tagtctggta attcccggtg atctgctgcc cctgccacca
     1321 cagaatgctc ccgctcatgg cgatcagcag taccgagacc agggtgatgg tcagccacgt
     1381 ccggccgacc atacgcagca cgctcaggcg gttcgactgc atcgccgcgg tcataccctg
     1441 ctcgtgggcg ctgatggcgt cgctgattct cttcgcgctt gcgctcagtt ccgcttttac
     1501 agatttctcg tgctcgctga atgcggcttt cagcatctcg ccggtactct gctgctgcgc
     1561 tttcgattgc tgctccaagt ccttcgccag cgctaaaaga ctgctcataa atggctccct
     1621 tcagtcggat gtttcgcccc ccgtccgggt cggcaatgct gatactgttt tttgtagtgc
     1681 ggaccacctc aaaacctgcc gctgtgagcg cacctgtgac gtcctcccga gttttgagct
     1741 ccccggatga ggctaaggcc agcaacccac gtgtaatcgc ctgagcggct tccagcttcg
     1801 tttccggcag tgcggacggc gtaaccagta accgccggtt ctccggggcg tttggatcat
     1861 gcagtcccag tctgccgttc accacggtct gccaggcatc gatgcgcggc cggtcggcgc
     1921 gatcgtaata cggctgcagg cgtttcccgg tcagcagttc agtgttgggg atcaggaaat
     1981 tcagctccag ccgccccttg tcggtgtgct ccacccacag aatgctgtac tggtctttat
     2041 cgagcccggg catcagaacc cgctcaaagc tggccatgat ctgctcccgc tgcccgggca
     2101 gcagttcagc ctccgcgaac gacagcacgc cggaggtgta ctttttcgca tacggcgagg
     2161 catcgataag ctcccggact tcctccggtt ttccctgcag cacggtcgcc ccctcgcgct
     2221 gccggtcttt tcccagcagg taatccaccg gaccggcacc accaccgcgc ccccggggat
     2281 gaaatttaac gatcatcatc cccccctttt tccagcaccg catgccgcag ccgctccagt
     2341 cccgcgtcta ttgccatcag ggcggccaca atctgcaccc gatcatgacc ggcaccaacg
     2401 gcattcactt tccgggcgat ctggttcagg ttgttaccca taccggcaag ctggcgcagc
     2461 agcgccggcg atattgacgg cagtctgcag gcacgcgccg gcttctcatc gaggcaggtc
     2521 tgacgcatcc acgccgccag ctgcctgccg tcgcaccgct cgagcagccg ccggtgttcg
     2581 tcttccgtca cccacatcgt gagcatcttg ttgcgtttgt ctgccagagt agcctcctga
     2641 taacaccggg acgggcggga aatgtttccc ggtcggcacg gtgttggaca agccgcaggc
     2701 gcgtcagtgg cttttagcgg gtttcggggc gcagccctga accagtcacg tagcgctagc
     2761 ggagtgtata ctggctaaat atgttacggc ggagtggtaa tgtatgaaag tgcttcatgt
     2821 gggaagggga aaatgtggct gacgggcgta agtgcaacat gctggtaaag gtgaaatgac
     2881 gcctcctcgc tcactcagtc gctgcgctcc tgccgtgaga ctgcggcggg cgttaccagc
     2941 tcacagatga cgggatacgc aagcagcgct caaatcagga gaagccggga agaggatgcg
     3001 gcgttgccgt ttttccatag gctccgcccc cctgacgagt atcataaaat ctgacgctca
     3061 aatcagtggt ggcgaaaccc gacaggacta taaagatccc aggcgtttcc ccctggtagc
     3121 tccctcgtgc gctctcctgt tcctgccatt cggtttaccg gtgtcattcc gctgttatgg
     3181 ccgcgtttgt ctcattccac gcctgacact cagttccggg taggcagttc gctccaagct
     3241 ggactgtatg cacgatcccc ccgttcagtc cgactaccac gctcttttcg gtaactatcg
     3301 tcttgagtcc aacccgaaaa ggcacgacaa atcgccattg gcagtagcca ctggtaaaca
     3361 ggatgtgcga gagatgtatt cagagttctt gaagtggtgg ccttactgcg gctacactgg
     3421 aaggacagct ttggtgacat gtctcgcaca agactgttac cacggttagt aaatctgcca
     3481 ggattaacta accttcgaaa aaccacctgc cagggtggtt ttttcgttta cagagcaaaa
     3541 gactacgctc agaaagagat tatctcaaga agatcatctc tttctcttac tcaagtcaaa
     3601 gcaaaaaaac accactccat cacaaactca ggttatagtc ggtatgcaac taataacact
     3661 gtaatttctg tgcaaaatcg aggttatgca tatgcaaatc aacatcaact gcaagagtat
     3721 cccaacatct ttcgatgttg tctgctcgaa ttgtgaatgg accggcgtgg ctacattaga
     3781 ttatccggaa aacgtaaaaa ccctatctgt cggaggagaa ataaatttca ctcataatga
     3841 cgagacgcca aaatgtccac aatgtagcgt tggatatata tatggtaaaa gtggcactta
     3901 taaacgtaat agtgcaacta accatatgga cagaatcgga gattataaag agtaaataat
     3961 acgcatcaca gcaatctaac gagggaaata taatgattga aaccacacta cttgccgttc
     4021 tcactggcgc attaagcaat cttacttctg at
//
