LOCUS       NZ_CP091613             4267 bp    DNA     circular CON 28-JAN-2024
DEFINITION  Salmonella enterica strain 1795 plasmid p1795-2, complete sequence.
ACCESSION   NZ_CP091613
VERSION     NZ_CP091613.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270679
            Assembly: GCF_026873345.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4267)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4267)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/28/2024 13:25:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,508
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,288
            CDSs (with protein)               :: 4,288
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 105
            CDSs (without protein)            :: 105
            Pseudo Genes (ambiguous residues) :: 0 of 105
            Pseudo Genes (frameshifted)       :: 42 of 105
            Pseudo Genes (incomplete)         :: 74 of 105
            Pseudo Genes (internal stop)      :: 26 of 105
            Pseudo Genes (multiple problems)  :: 35 of 105
            Pseudo Genes (short protein)      :: 1 of 105
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091613.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4267
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1795"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p1795-2"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021-08"
                     /collected_by="Meina Yue"
     gene            complement(join(4168..4267,1..710))
                     /locus_tag="L5512_RS22495"
                     /old_locus_tag="L5512_22510"
     CDS             complement(join(4168..4267,1..710))
                     /locus_tag="L5512_RS22495"
                     /old_locus_tag="L5512_22510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010222407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044525163.1"
                     /translation="MSKDKKERSKNRYHQLVEKIFFDKYVDGDLEVLFERLEINSAAKD
                     LGIELPSNVGDVIYSIRFRTPMPESILLTQPEGKEWIIELAGRSKYRFRLVTISRILPN
                     PNMVAIKIPDNTPEIITGYSLDDEQALLAKVRYNRLIDIFLGITTYSLQNHLRTTVKGI
                     GQIEIDELYVGIDKYGCHYIIPVQAKGGTDQISMVQTSQDTAWCEQKYPNVRCRAISAQ
                     FVSSDLIALFELKIDEGQVKLIEERHYKLVPAKELDSSDISNYRMSV"
                     /name="hypothetical protein"
     gene            complement(703..1953)
                     /locus_tag="L5512_RS22500"
                     /old_locus_tag="L5512_22515"
     CDS             complement(703..1953)
                     /locus_tag="L5512_RS22500"
                     /old_locus_tag="L5512_22515"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015160339.1"
                     /GO_function="GO:0003886 - DNA
                     (cytosine-5-)-methyltransferase activity [Evidence IEA];
                     GO:0008168 - methyltransferase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0006304 - DNA modification [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="WP_130574759.1"
                     /translation="MTRPIAVDLFAGAGGLSLGFEQAGFDIMASVEIDPIHCSAHKYNF
                     PMCKTICRSVVDVTGEYVREVSGIGEKEIDVVIGGAPCQGFSLIGKRALDDDRNKLVYH
                     YVRLVLELKPKYFIFENVKGLTVGKHKQFLVEIMDAFKDGGYDVVSDYKVLNAADYGVP
                     QDRRRLFLMGGRKGIALPSYPEPLSIRTTVGDAIGDIPDAEKYPELWGRDWVYAKFGEQ
                     SLYSSYLHGVGKDPSDFSYPRIFNKDKLTCSLLTDHSDISRGRFVETLPDTVEPISRFK
                     KLSMNGLCNTLRAGTASDRGAFTSPRPIHPIYPRVITVREAARLHSYPDWFRFHVTKWH
                     GFRQVGNSVPPMLARSVGLQIMKVLGVTPKKPTKKIKLGDESLVAISMSDAASMFGVSS
                     NVIAKRIKNSNKEVVCE"
                     /name="DNA cytosine methyltransferase"
     gene            complement(2365..2733)
                     /locus_tag="L5512_RS22505"
                     /old_locus_tag="L5512_22520"
     CDS             complement(2365..2733)
                     /locus_tag="L5512_RS22505"
                     /old_locus_tag="L5512_22520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042114977.1"
                     /translation="MANFNLGPRTAIAAVRDSLADIENWKKNGIPRREIVAVLNERYGL
                     KISQVAFDKALYRLRKNTDGSSLATADSLPATEKSVSVAGAPENGFFLSVNDFRRVEDE
                     SQRLAESLRDSIGRRKGF"
                     /name="hypothetical protein"
     gene            complement(3104..3253)
                     /locus_tag="L5512_RS22510"
                     /old_locus_tag="L5512_22525"
     CDS             complement(3104..3253)
                     /locus_tag="L5512_RS22510"
                     /old_locus_tag="L5512_22525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_164840373.1"
                     /translation="MPSEHDEQRDAADTQLPGEYDLFDLMAKVTEDNLHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            3817..3948
                     /locus_tag="L5512_RS22575"
     CDS             3817..3948
                     /locus_tag="L5512_RS22575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072013439.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHAKAPLAAATGNRIHGAE"
                     /name="replication initiation protein"
     Typing          complement(3247..3463)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="91.781"
                     /coverage="100.0"
                     /evalue="4.32e-80"
     Typing          3410..3926
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.192"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tctatcttta gctcaaacag tgcaatcaaa tcgctcgaaa caaactgagc ggaaatagct
       61 ctacatctaa catttgggta tttttgttca caccacgctg tatcttgcga tgtttgcacc
      121 attgatattt gatctgtccc accttttgct tgaactggta ttatataatg gcaaccgtat
      181 ttatctatac ctacataaag ttcatcgatc tctatttgac caattccctt caccgtagtt
      241 cttaaatgat tctgtaaaga atatgtggtt atacctagaa atatatctat tagccggtta
      301 tatctcacct tcgccagcaa tgcctgctcg tcgtctaaag aataacctgt aattatctcc
      361 ggggtattgt ctggaatttt tattgccacc atattaggat ttggcaaaat cctactaata
      421 gttactaatc taaatcgata ctttgaccta ccagccagct caataatcca ctccttacct
      481 tctggctgag tcaacagaat actttctggc ataggcgttc taaatctgat tgaatatata
      541 acatcaccaa cattagatgg gagttctata cctaaatctt ttgcagcact gtttatctct
      601 aacctttcaa acaaaacctc taagtcacca tcaacatatt tatcgaaaaa tatcttttct
      661 accaactgat ggtatctatt tttggacctt tcttttttat ccttactcac aaacaacctc
      721 cttgttacta ttttttattc tcttagcaat tacatttgat gacacaccaa acatagatgc
      781 agcatcggac atagaaatag caaccaaact ttcatcaccg agtttgattt tcttcgttgg
      841 tttttttggc gtaacaccaa gaaccttcat aatctgcaag ccaacacttc tagctagcat
      901 aggaggaaca ctattaccga cctgtctaaa tccatgccac ttagtcacat gaaatctgaa
      961 ccaatcagga tatgaatgca gtcttgctgc ctctctgacc gtgatgaccc taggatagat
     1021 cggatgtata ggacgaggag atgtaaaagc acctctgtca cttgctgttc ctgcccttaa
     1081 agtattacat agcccattca tcgagagctt tttaaacctg ctgattggtt ctaccgtgtc
     1141 aggcaaagtt tcaacaaacc gccctctaga aatgtcagag tgatctgtca gtaaagaaca
     1201 cgttaatttg tctttattaa aaatccttgg gtagctaaaa tcactaggat cttttcctac
     1261 gccatgcaaa taggatgagt atagtgattg ctcaccaaat ttagcataaa cccaatctct
     1321 accccatagc tcaggatatt tttccgcatc aggaatatcc ccaatagcgt ccccaaccgt
     1381 tgttctaatg gataatggct cagggtatga tggcagagca attcctttcc ttccccccat
     1441 taagaaaaga cgacggcgat cttgaggaac tccataatca gctgcgttta gcactttata
     1501 atcgcttaca acgtcgtacc cgccatcttt aaatgcatcc attatctcta ctaaaaactg
     1561 cttatgctta ccaaccgtca acccttttac attttcaaaa ataaagtatt taggctttag
     1621 ctcaagaacc agccgtacat agtgatagac cagtttgttt ctatcatcat caagcgcgcg
     1681 ttttcctatt aatgaaaagc cttggcaggg agcgcctccg atcactacat caatctcttt
     1741 ctcaccaata cctgaaactt ccctaacgta ttctccggta acatcaacaa cacttctaca
     1801 tatcgttttg cacataggaa agttatattt gtgagcagag caatgtattg gatctatttc
     1861 aactgatgcc attatatcaa agccagcttg ctcgaaaccg agactcagcc cacccgctcc
     1921 agcaaataaa tcaacagcaa tcggtctagt cattctttac acccacgtta tataaaatca
     1981 acatgatgct atcagaaaaa cgatcgcttt accgatcgtt tttctgattt cgattgaaca
     2041 taacatccct tgcgtgcacc acctgagagg ccctcagggc gtttctgacg ggaaaccggc
     2101 aaaacaggca acaaaccacc cgaaaacccg ccagaaacgc gcaggctctg tttttacggc
     2161 atgcatgagt atgcgcgcaa gtgcatagcg cggaaattca cgccattcag ccggggtaag
     2221 tcctgtttcc ggcgttcttc ccatccgaaa acggtgaacg ggcgggaaat ttattgcgtg
     2281 gccgtgaggc gttggcaaga acatcaggca tgaagataag ggggcggatg tacgaacgtt
     2341 tcacaaaaca atttcgagtg gaaatcagaa ccccttcctc ctgccaatgc tatccctcaa
     2401 tgactcagcc agtctttgag attcatcttc cactcttctg aagtcattca cggacagaaa
     2461 aaaaccattc tctggcgcgc ctgctacaga aacagatttt tctgtagcag gcaaagaatc
     2521 cgctgtagcg agagacgatc catctgtatt ttttctcaac ctgtaaagag ccttatcaaa
     2581 cgcaacctgt gagatcttca gaccgtaacg ttcattcagt acagccacaa tttctctcct
     2641 ggggatgcca tttttcttcc agttttctat atcagccagg gaatctctga cagccgcaat
     2701 cgctgttctt ggaccaaggt taaaattcgc catacgccac ccataatgtc ttatcaatgt
     2761 ctcattttag tccaaaatat cacagaatgt cttataattg tcctatcctt gtctttcacg
     2821 gttcatgtag ccatgaaccg gcaggtatgt aacgcttttt tatttcgctc aggcctgcca
     2881 gatatagatt catgccttaa aagccaagtt gctttatccc ttaaatggtc atacaccata
     2941 cgcaatcgcg atttcatcgc aactgcatga atcaaatggg aaaaatggga tttttcgttt
     3001 atacgtgtaa tacgcaaggt attacagtca accgtaatta catgaaaata aagaaataag
     3061 atgtaatacc accgtattac acatacgctg gccagcgaaa aagctataac gcttcccgac
     3121 cgacaggagg cccggaatcc accggggcgt gcaggttatc ttcagtaacc ttcgccatta
     3181 aatcaaaaag gtcatactcg ccgggaagct gcgtatcagc agcatcccgt tgttcatcat
     3241 gttcagatgg catggggtga tatccagtag ctgagaggtt gttagcgggt ttcggggcgc
     3301 agccctgaac cagtcacgta gcgctagcgg agtgtatact ggcttagtat gttacggcga
     3361 gatggagatt cggggaagtg cttcatgtgg caagggggaa aatacggctg cggggcgtaa
     3421 gtgcaaaatg caggtaacga tgaaatgacg cctcctcgct cactcggtcg ctgcgctcct
     3481 gccgtgagac tgcggcgggc gttaccagct cacgaaggac gagataacga gattgcgctc
     3541 aagtcaggaa agtcaggaaa aaggatgcgg cgttgccgtt tttccatagg ctccgccccc
     3601 ctgacaagca tcacaaaatc tgacgctcaa atcagtggtg gcgaaacccg acaggactat
     3661 aaagatccca ggcgtttccc cctggtagct ccctcgtgcg ctctcctgtt cctgcctttc
     3721 ggtttaccgg tgtcattccg ctgttatggc cgcgtttgtc tcattccacg cctgacactc
     3781 agttccgggt aggcagttcg ctccaagctg gactgtatgc acgaaccccc cgttcagtcc
     3841 gactgctgcg ccttgtccgg taactatcgt cttgagtcca acccggaaag acatgcaaaa
     3901 gcgccactgg cagcagccac tggtaatcgg attcacggag cggagtagag ttatctacag
     3961 agttcttgaa gtggtggcct gactacggct acactgaaag gacagttttg gtatctgcgc
     4021 tccgtgaaag ccagttacct tcggaagaaa gagttggtag ctctaaattc cggcaaacga
     4081 accaccgttg gtagcggtgg tttttttgtt tacggcttag gagattacgg ctagaacgaa
     4141 aggatctcaa gaagatcctc tcagaaatta tacagacatg cggtagtttg agatgtcaga
     4201 gctatctaac tcttttgccg gaaccagttt gtaatgcctt tcctcaatca atttcacttg
     4261 tccttcg
//
