LOCUS       NZ_CP091609             6431 bp    DNA     circular CON 28-JAN-2024
DEFINITION  Salmonella enterica strain 1810 plasmid p1810-2, complete sequence.
ACCESSION   NZ_CP091609
VERSION     NZ_CP091609.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25270680
            Assembly: GCF_026873325.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6431)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella Goldcoast recovered from children
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6431)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/28/2024 13:39:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,742
            CDSs (total)                      :: 4,627
            Genes (coding)                    :: 4,504
            CDSs (with protein)               :: 4,504
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 123
            CDSs (without protein)            :: 123
            Pseudo Genes (ambiguous residues) :: 0 of 123
            Pseudo Genes (frameshifted)       :: 48 of 123
            Pseudo Genes (incomplete)         :: 85 of 123
            Pseudo Genes (internal stop)      :: 29 of 123
            Pseudo Genes (multiple problems)  :: 36 of 123
            Pseudo Genes (short protein)      :: 1 of 123
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091609.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6431
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="1810"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p1810-2"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2021-08"
                     /collected_by="Meina Yue"
     gene            231..941
                     /locus_tag="L5513_RS23655"
                     /old_locus_tag="L5513_23670"
     CDS             231..941
                     /locus_tag="L5513_RS23655"
                     /old_locus_tag="L5513_23670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000967646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000967645.1"
                     /translation="MLYWKKMPSLWIGNRIAEFSDLDTAKAIAALKIYLTFCLFCKESD
                     SGHRTVELTFSNLCEIASLSRSLVNEGLKILYAKELIKNISPTARKKIYTVDVLENHND
                     GWCKLPFKGVVDEDKKISAFQSMHNRYPFELLALQTYMYLLYARDNNSDYTLARKKTIC
                     KKLKCKLPELNKAITYLIHIGLLDRVVKKSIENIPLEMFHDSYYFYIKTGSKSALTYRR
                     KSEPPVIPEADLPF"
                     /name="hypothetical protein"
     gene            1735..1929
                     /locus_tag="L5513_RS23660"
                     /old_locus_tag="L5513_23675"
     CDS             1735..1929
                     /locus_tag="L5513_RS23660"
                     /old_locus_tag="L5513_23675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041636.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADVQAAMCERLHELA
                     EELQNSIQVHFEAENETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2166..3845)
                     /locus_tag="L5513_RS23665"
                     /old_locus_tag="L5513_23680"
     CDS             complement(2166..3845)
                     /locus_tag="L5513_RS23665"
                     /old_locus_tag="L5513_23680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000598747.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="WP_241467032.1"
                     /translation="MIKVQLPTREHRLHELNLNYGDVVFFIGQNGSGKSSLLNNLFQKI
                     GSQSSVYVLAHRKNTFSSDIIDFSNSEYKNAQGWIFNEIKGSQCRYRVNYDSQMVAIPI
                     VKLKNKVIARALSFVDSFKSNNNQPAGLIKSEVDVLNMVFADAKLSIEFFLDDEANVMA
                     RNIKGENPDIYPISMLSDGEKSALIIASEIICADENTTIFLDEPERHMHRSIVSPLLSS
                     LMKYRRDCVFFVATHELSLPAFFDNVKVVNVKNCYFSEQREPIYWDFNVVEDYDELFNG
                     VDEQTKIDILGARDKVLFVEGVTSSLDRDLYSAIFPMVSVVSKQKCDLVELAVKGLRLN
                     DEIHRVSAFGIIDNDNKVQAKVDNLKKDFIFSLDVHSIESIYYHPRMIKFVIDFVKEAN
                     GIDNVDALFMEIHDFAIDAINEKRDHLCCRAVEKTIRADLMSAIPKQQDIKNRIKFNKE
                     IDIECYVNKEIAAFDAMIAERNLDALVSRYPIRETNLLAHVAKKCGFADRSRYELNVIR
                     TIKSNADARAFVLSLLGGLDEAILGCSDTENSPADTHTVFAM"
                     /name="AAA family ATPase"
     gene            complement(3842..>4432)
                     /locus_tag="L5513_RS23670"
                     /old_locus_tag="L5513_23685"
                     /pseudo=""
     CDS             complement(3842..>4432)
                     /locus_tag="L5513_RS23670"
                     /old_locus_tag="L5513_23685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697689.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            4996..5127
                     /locus_tag="L5513_RS23740"
     CDS             4996..5127
                     /locus_tag="L5513_RS23740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071525238.1"
                     /translation="MHDPPVQSDRCALSGNYHLESNPERHDLSPLAAAIGKGCTRDY"
                     /name="replication initiation protein"
     gene            5733..6248
                     /locus_tag="L5513_RS23675"
                     /old_locus_tag="L5513_23690"
     CDS             5733..6248
                     /locus_tag="L5513_RS23675"
                     /old_locus_tag="L5513_23690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000675351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III toxin-antitoxin system ToxN/AbiQ family
                     toxin"
                     /protein_id="WP_000675351.1"
                     /translation="MKFYTISSRYIEYLKGFEDKVPNSEDPNYQNPKAFIGIVLEIQGH
                     KYLAPLTSPKPWHSTIKESSPSFFKLHENGVPENQLGLINLKFMIPIIEAEVSLLDLNG
                     MPNTAYKRMLYKQLQFIRVNSDKIAEKSELLRKLVLQGKMQGTCNFSLLEEKYRDFGKE
                     ANDTEEGE"
                     /name="type III toxin-antitoxin system ToxN/AbiQ family
                     toxin"
     Typing          complement(1220..1475)
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.574"
                     /coverage="89.0"
                     /evalue="2.65e-108"
     Typing          complement(1600..1699)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.02"
                     /coverage="100.0"
                     /evalue="1.35e-41"
     Typing          4816..5324
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.553"
                     /coverage="99.0"
                     /evalue="1.7000000000000002e-157"
ORIGIN
        1 cacttttatc tttctagata gatttttgtg aaggcgttac aacgccttca caccctgaga
       61 taataaaaac aacaagaagc gattacgagg ggtgaaaaat gtttgagaaa ggcgtgtgtc
      121 tggttgagag gcttgcgaaa gtcgcagcgg taataactaa ccttgtgctc tcactttcta
      181 tattgggatt ggtctatttc atctttcaaa acttggcctt gaggtgattc atgctgtact
      241 ggaaaaaaat gccttcacta tggataggaa ataggatcgc tgaattcagc gatcttgata
      301 cagcaaaagc tatagcggca ttaaaaattt atttaacatt ctgcctgttt tgcaaagagt
      361 cagactctgg ccacagaacg gttgagttaa cctttagcaa cctttgcgag atagcgtcat
      421 taagccgttc cttggtgaac gaaggcctta aaattcttta tgcaaaagag ctgataaaaa
      481 acatatcgcc gactgcacga aaaaagattt ataccgtgga tgtgctagaa aatcataatg
      541 atggatggtg caagcttcca tttaaaggag ttgtcgacga ggacaaaaaa ataagtgcat
      601 ttcaatccat gcacaacaga tatccctttg agttactagc cttacaaact tacatgtatc
      661 ttctttacgc tcgtgataat aacagcgact acacactggc taggaaaaag accatatgca
      721 aaaaattgaa atgcaaatta cctgaactaa acaaagcaat cacctacctt atccatatag
      781 gtttgcttga tagagttgtg aaaaaatcca tagaaaacat acctctagag atgtttcatg
      841 actcgtacta tttctatata aaaacaggca gtaagagcgc tctaacctac agaaggaaat
      901 cagaaccgcc agttattcca gaagccgact taccattttg attgtttatt ccacaccaat
      961 tatcacacgg attgaacata acatccgttg cccgcacctc agaaacgcgc tgaacgcgat
     1021 tctgacgcaa ataccgcaaa aagagatgtt ttccccaagg taaaccgaaa aaatgcgtca
     1081 ggatcgtttt cagctcgctg catagctatg catgaaagtg aatggcgaac ggtttgggcg
     1141 catacggtgc ccatgagaca cattttcgga cattttcagt tcgtgaatcc ctgactcatt
     1201 gctacatatc tgaacagaca cccctagcag cgcccccagg ggcatcctgt aaaaaaacac
     1261 accgcgccgc tagcagcacc cctaatataa aatgatgttt tttatgaaaa tagtcagtac
     1321 cacccctaca aagcggtgtc ggcgcggtgt tgtagccgcg ccgacaccgc ttttttaaat
     1381 atcacaaaga gagcaagaga aactaatttg tcataactct ctatttataa agaaaaatca
     1441 gcaaaaaatt gtttttgcgt ggggtgtggg catttcaggc atgagaacag actcgcgttt
     1501 ttccggagta tcagcggaat tattgattaa gaaacactcg acgcagagcg aaattttatg
     1561 caacagcggc tgcactgcac agggattatt tatcagttga tatgctgtgc catgatacgt
     1621 cctaaaaaaa acaggacagg atgtgcaatt gtaataccgt cgcccgcaac gtcttacaat
     1681 taccacctag tcagggtcca cccgacaccc ggtactgacg gagaacaacg gaaggtgaac
     1741 aaacagcaac aaactgcgct gaatatggcg cgatttatca aaagccagag cctgacactg
     1801 cttgaaaaac tggatgctct ggatgccgac gtacaggcgg ccatgtgtga acgactgcac
     1861 gaactcgcag aagaactcca gaacagcatc caggttcact ttgaggccga aaatgaaaca
     1921 ggaacataac gaagctgacg aaggcggtca cggcttgccc gtgagcattt tcgtcagcag
     1981 acaagcccgt cagggcgcgt cagcgggttt taacgggtgt cggggcgcag ccctgaccca
     2041 gtcacgtagc gatagcggag tgtatactga cttaatacag caactatcgt acatcgcggt
     2101 caagtcacgc acaaacaaaa agccccgcaa aagcagggct gttatctgat ataggttgtt
     2161 tagtctcaca tagcaaaaac tgtatgggta tcagctgggc tattttccgt atctgaacat
     2221 cccaaaatag cttcatctaa ccctccgagg agggataaaa caaatgctct agcgtcagca
     2281 ttactcttga tcgtacgaat cacgtttaac tcatatctag agcgatcggc aaaaccacat
     2341 tttttagcta catgtgccaa caaatttgtt tctcggatag ggtagcgtga gactaacgca
     2401 tccaaatttc gttccgcgat cattgcatca aatgcagcaa tttctttatt aacataacat
     2461 tcaatatcaa tttctttatt aaacttaatg cggttcttaa tatcttgctg ttttggtatg
     2521 gccgacatta agtcggccct tattgttttt tcaactgcac ggcagcataa gtgatcgcgc
     2581 ttttcattta tggcatcaat agcgaagtca tgaatttcca taaataaggc atcaacatta
     2641 tctatcccat tagcctcttt tacaaagtca atgacaaact taatcattct aggatgataa
     2701 taaatcgact caatagaatg aacgtcgaga ctaaaaatga agtctttctt taagttatcg
     2761 accttcgcct gcaccttgtt atcattatca atgataccaa acgccgatac tcgatgaatt
     2821 tcgtcattta gtctcaagcc ttttaccgcc aattcaacca aatcacattt ttgtttagat
     2881 acaactgaaa ccataggaaa tatggccgaa tataaatcac ggtcaaggct agacgtaaca
     2941 ccttcaacaa atagaacctt atccctagcg ccaagtatat ctattttagt ttgctcatca
     3001 acaccattga ataattcgtc ataatcctca acaacattga aatcccagta tatcggttct
     3061 ctttgttcgg aaaaatagca gtttttaacg ttaaccactt tcacgttatc aaaaaacgca
     3121 ggcaagctta actcgtgggt ggcaacaaaa aaaacacaat ctctacgata tttcattaaa
     3181 gatgaaagca gcggagacac aatgcttctg tgcatatgtc gctcaggctc atctaagaaa
     3241 atagttgtgt tttcatcagc gcaaataatc tcactggcaa taattagtgc acttttttca
     3301 ccgtcagaaa gcattgatat aggataaata tcaggatttt cacctttaat attccttgcc
     3361 ataacgttgg cttcatcatc tagaaagaac tcaatagata atttggcatc agcaaaaacc
     3421 atgtttagaa catcaacctc tgactttatt aaccctgccg gctgattgtt atttgattta
     3481 aatgaatcta cgaaacttaa agccctggct atcactttgt tttttaattt tactataggt
     3541 atggcaacca tctgtgagtc ataattaact ctgtatctac attgactgcc tttaatttca
     3601 ttaaaaatcc atccctgcgc atttttatac tcactattac tgaaatcaat aatgtcgctg
     3661 ctgaatgtat tttttctatg cgctaaaaca tatactgatg attgagatcc tattttttga
     3721 aaaagattat ttaataggct ggatttacca ctaccattct gaccaataaa aaaaacgaca
     3781 tcgccataat taagattaag ctcatgaaga cgatgttctc tagtaggtaa ctgaactttt
     3841 atcattttcc tttctcttta gcttttaatc taaaatacgt tgaacgacta attcctaaat
     3901 taatccatgg agagtttaat gaaggcctac ctcctccttt actttttttc ccacatagag
     3961 attggatgtc tgccgaatgg gtctttttta taaaatcatc aaatgatgac tctgtaaaat
     4021 ttttattagt ccacttagct acacttttgg caatacccat gacttcgttc tcgtctaaag
     4081 gtgcggagaa ctgcaggttg taggctttag cgcgttcaaa gcaagcttgt agccattggt
     4141 catactgcgg ccagccttgg tggatagcgc ggtaagccca cttgcgggtt ttatcgaaga
     4201 gggtgcagtt acggcctaaa ccgtagtccg gtaggatttc gcggtcatta gctgcgccaa
     4261 ggtcgaggta gtcggctaat cagtcgaggg tgtagagctc aggctgccaa acggtgatct
     4321 gccagtgcag gtggttcgga ttctcgcaaa ttagccctga ataccccgca tcggcgccca
     4381 attttttacg cagcgcattc tcaatgacgg ctgcatattt gaggggggcg gcgagccccc
     4441 tgaaccagtc acagaaggca cctcgcagag gggacgctgt gagtactgac ttaactatgc
     4501 ggtatcagtg cggattgtat gaaaagtgcg ctattgacgg tgtgaaatgc cgcacagatg
     4561 cgtaaggaga aaatgcaaat gcctacgctc ttccgcttcc tcgctcacta actcgctgcg
     4621 ctcggtcgtt cggctgtggc gagcggtatc agctcactca gagacggtaa tacggttatc
     4681 cacagaatca ggggataagg ccggaaagaa catgtgagca aaaaggcaaa gccagggcaa
     4741 aaggccgcgc cgctggcgtt tttccatagg ctccgccccc ctgacaagca tcacagaatc
     4801 tgacgctcaa atcagtggtg gcgaaacccg acaggactta aagataccag gcgtttcccc
     4861 ctggtggctc cctcgtgcgc tctcctgttc ctgcctttcg gtttaccggt gtcattccgc
     4921 tgttatggcc gcgtttatct cattccacgc ctgacactcg gttccgggta ggcagttcgc
     4981 tccaagctgg actgtatgca cgaccccccc gttcagtccg accgctgcgc cttgtccggt
     5041 aactatcatc ttgagtccaa cccggaaaga cacgacttat cgccactggc tgcggccatt
     5101 ggtaaggggt gtacaagaga ttactgatgc agagttcttg aagttagaac caaactacgg
     5161 ctaaactgga aggacgaatt tggtggcagc ggtcttgtac accctgttac cacggttcag
     5221 aagttcccca acttactgaa ccatcgaaaa accacctccc caggtggttt tttcgttttc
     5281 agagcaagag attacgcgta gaaaaaaagg atctcaagca gatccttttt gattcatgtc
     5341 ataacccaac ttaccccccc cccacactga actgatgaaa aaaacagtca actctggaat
     5401 cagtacttta aaaaaacctc aaatgacatt ttgaggggat acagcggcaa gggctacaac
     5461 tacacagctg caagttacct agttgtaagc ctaggcgaag atcaggtata ctcgaatcaa
     5521 ggtgatttgc tacctttaag tgcagctaga aattcaggtg atttgctacc ttaagtgcag
     5581 ctagaaattc aggtgatttg ctacctttaa gtgcagctag aaattcaggt gatttgctac
     5641 cttaagtgca gctagaaatt taggtcattt actaccttaa agtaatacag taaaagaggc
     5701 gactacacag tcgccttttt tacgagaaaa aaatgaaatt ttacactata tcaagcagat
     5761 acattgaata cctaaaggga ttcgaagaca aagttcccaa tagcgaagat cctaactatc
     5821 agaatccgaa agctttcatt ggcattgtgt tagagattca agggcataag tatctagccc
     5881 ctttaacatc cccaaagcca tggcatagca ctattaaaga atcatcgcct agcttcttta
     5941 agctccatga aaatggtgtc cccgaaaatc agctcggatt gattaatctg aagttcatga
     6001 ttccaatcat cgaagccgaa gtatccttac ttgacttgaa cggtatgccg aataccgcct
     6061 acaagagaat gctctataag cagctccagt ttattcgtgt aaattcagac aaaatagctg
     6121 agaaatcaga gcttttaagg aagctcgtcc tgcaaggaaa aatgcaagga acatgtaatt
     6181 tttccctgtt agaagaaaaa taccgagatt tcggcaaaga agctaatgac acggaagaag
     6241 gcgagtaacg cttcattgcc atcctgaata gtgtccgaaa ccgagtgatc ttggacacta
     6301 ttcaggtcta atattcaaaa ctcaacggtt cgactcacat acatagttca cggtgaacca
     6361 tattatgatt aatacaaata ccaaaactca aataaaaaac cgttaaaaac aacaagataa
     6421 aaaattaaca t
//
