LOCUS       NZ_CP091576             3554 bp    DNA     circular CON 10-JUN-2024
DEFINITION  Salmonella enterica strain 2 plasmid p2-6, complete sequence.
ACCESSION   NZ_CP091576
VERSION     NZ_CP091576.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16419716
            Assembly: GCF_023330905.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3554)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella carrying the mcr gene in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3554)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100X
            Sequencing Technology :: Oxford Nanopore GridION; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023330905.1-RS_2024_06_10
            Annotation Date                   :: 06/10/2024 04:44:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,317
            CDSs (total)                      :: 5,194
            Genes (coding)                    :: 5,050
            CDSs (with protein)               :: 5,050
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 144
            CDSs (without protein)            :: 144
            Pseudo Genes (ambiguous residues) :: 0 of 144
            Pseudo Genes (frameshifted)       :: 37 of 144
            Pseudo Genes (incomplete)         :: 115 of 144
            Pseudo Genes (internal stop)      :: 26 of 144
            Pseudo Genes (multiple problems)  :: 31 of 144
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091576.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3554
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p2-6"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2016-04-26"
                     /collected_by="Meina Yue"
     gene            join(3175..3554,1..346)
                     /locus_tag="INN74_RS26505"
                     /old_locus_tag="INN74_26505"
     CDS             join(3175..3554,1..346)
                     /locus_tag="INN74_RS26505"
                     /old_locus_tag="INN74_26505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001307201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_001427890.1"
                     /translation="MASMETEQQPQQTTEQIEVKTKRVQCFIDGYNLYHAIEETGNKAL
                     HWVDLKSLCKRYLPKNASIDNVFWFSAKPSHLSRAINENYQNYTNALTECGVDVIGGRF
                     KKKNVTCEADNGCGGVFHKHEEKESDVNLAISLVSGACNDEYDIAIIITADSDLCPPIK
                     YVRERFPNKELWLVAPPGRIRRATDLCSLSSRSMEIKNDALRACCMRDEFYKDGVLVAR
                     RPQEWRAVANTRQRRARSR"
                     /name="NYN domain-containing protein"
     gene            complement(551..664)
                     /locus_tag="INN74_RS26685"
     CDS             complement(551..664)
                     /locus_tag="INN74_RS26685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001422066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001712890.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHDLTPLAAAIGN"
                     /name="hypothetical protein"
     gene            complement(1152..1346)
                     /locus_tag="INN74_RS26510"
                     /old_locus_tag="INN74_26510"
     CDS             complement(1152..1346)
                     /locus_tag="INN74_RS26510"
                     /old_locus_tag="INN74_26510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_052895291.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLRLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEAENRTGI"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1630..1953
                     /gene="mobA"
                     /locus_tag="INN74_RS26515"
                     /old_locus_tag="INN74_26515"
     CDS             1630..1953
                     /gene="mobA"
                     /locus_tag="INN74_RS26515"
                     /old_locus_tag="INN74_26515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(2241..2855)
                     /locus_tag="INN74_RS26520"
                     /old_locus_tag="INN74_26520"
     CDS             complement(2241..2855)
                     /locus_tag="INN74_RS26520"
                     /old_locus_tag="INN74_26520"
                     /inference="COORDINATES: protein motif:HMM:NF019884.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_052895292.1"
                     /translation="MSTKNAQKEQKKESLITTHWGDDATIHGWTAIPNSLLMLQGDLGI
                     GSTEMCILLNILMHQWPESGESISFPSIGTIASRIGVSKRTIQRGVSNLEALGILTRYQ
                     STRNDPLTNGANIFDSTPLKEYLNKKAKGITISNSNKKKERKKTGITPNIKLPRICPKC
                     LKTKATSHEEIVKFFGVRKTMAGEIINSYCKECRASEKDLF"
                     /name="helix-turn-helix domain-containing protein"
     Typing          1382..1621
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="7.6e-123"
     Typing          complement(593..1117)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.274"
                     /coverage="95.0"
                     /evalue="0.0"
     Typing          1631..1950
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="2.86e-62"
ORIGIN
        1 agagtccgat gttaatttgg ctataagtct agtgtctggt gcgtgtaatg atgagtatga
       61 tatagccatt attatcactg cggattctga cttatgcccc cctattaaat acgtaagaga
      121 gcgattccct aataaagagc tttggcttgt agctcctccg gggagaatca ggcgagcgac
      181 agatctctgc tctctgtcat cgagaagtat ggagatcaag aatgatgctt tgagagcctg
      241 ctgtatgcgt gatgagttct acaaagatgg agtacttgta gccagaaggc ctcaggaatg
      301 gcgagctgtt gccaatacca ggcaaagaag ggctagaagt cgttaggctt tgttgacgca
      361 gctagcgcaa ggagattaat ctaactaggt tgaaaacgaa aaaaccgcct tggcgggcgg
      421 tttttcgaag gttcatagag ttggcgctct ttgaaccgag gtaactggct ttgaggagca
      481 cagtcgccaa aacttgttct ttcagtttag ccttatcagg tgcataactt caagactcaa
      541 ctcctctaaa tcagttacca atggctgctg ccagtggcgt taagtcgtgt ctttccgggt
      601 tggactcaag acgatagtta ccggataagg cgcagcggtc gggctgaacg gggggttcgt
      661 gcacacagcc cagcttggag cgaacgacct acaccgaact gagataccaa cagcgtgagc
      721 tatgagaaag cgccacgctt cccgaaggga gaaaggcgga caggtatccg gtaagcggca
      781 gggtcggaac aggagagcgc acgagggagc ttccaggggg aaacgcctgg tatctttata
      841 gtcctgtcgg gtttcgccac ctctgacttg agcgtcgatt tttgtgatgc tcgtcagggg
      901 ggcggagcct atggaaaaac ggcatcggcg ctggcttgtt ccggtgcttt gctttttgct
      961 cacatgttct ttccggcgtt atcccctgat tctgtggata accgtattac cgcctttgag
     1021 tgagctgaca ccgctcgccg cagtcgaacg accgagcgta gcgagtcagt gagcgaggaa
     1081 gcggaagagc gtctgacgtg gcattttctc cttacgctcc gctatgccgt tctgcatcct
     1141 gtccgggtgc gttatatccc ggtgcgattt tccgcttcaa agcgtgtctg tatgctgttc
     1201 tgaagttctt ccgcgagttc gtgcagcttc tcacacatgg cggcctgttc gtcagcatca
     1261 agtgcgtcca gtttttcgag cagcctcagg ctctggcttt ttatgaatcc cgccatgttg
     1321 agtacggttt gctgctgctt gttcatcttt ctgttttctc cgttctttct gtcatctgcg
     1381 ttgtgtgatt atatcgagta ccacttttcg actgttttac cgccggtatt ctgctgtctg
     1441 actctttgac gggcatttct gtcagacaac actgtcactg ccaaaaaact gccgtgcttt
     1501 tgtcggtaat tcgagcttgc tgacaggaca ggatgtgcaa ttgttatacc gcgcatacat
     1561 gcacgctatt acaattaccc tggtcagggc tttgccccga cacccatgtc agatacggag
     1621 ccatgtttta tgacaaaacg aagtggaagt aatacgcgca ggcgggctat cagtcgccct
     1681 gttcgtctga cggcagaaga agaccaggaa atcagaaaaa gggctgctga atgcggcaag
     1741 accgtttccg gttttttacg ggcggcagct ctcggtaaga aagttaactc actgactgat
     1801 gatcgggtac tgaaagaagt tatgaggctg ggggcgttac agaaaaaact ctttatcgac
     1861 ggcaagcgtg tcggggacag agagtatgcg gaggtgctga tagctattac ggagtatcac
     1921 cgggccctgt tatccaggct tatggcagat tagcttcccg gagggaaact gtcgaaaaca
     1981 gacggtatga acgccgtaag cccccaaacc gatcgccatt cactttcata catagctatg
     2041 cagtgagctg aaagcgatcc tgccgcattt ttccggttta ccccggggaa aacatctatt
     2101 tttgcggtgt ttgcggcaga atcgcgttca gcgcgtttct gcggtgcgcg taatgagacg
     2161 ttatggtaaa tgggagcgtt agaaacagtc ccatttactt gagtgggggg cagttggcca
     2221 tataaaaaat ggtcaactgt ttaaaataga tctttttcag aagctcggca ttctttgcaa
     2281 tatgaattta ttatttcccc agccattgtt tttcgcacgc caaaaaattt aacaatttct
     2341 tcgtggctgg ttgctttagt tttcaaacat tttgggcaaa tgcgtggtaa ttttatgttg
     2401 ggtgtaattc cggttttctt tctttctttc tttttgttgc tgttgctaat tgttatgcct
     2461 ttagcttttt tgtttaaata ttcttttaga ggagttgagt cgaatatatt agcgccattg
     2521 gttagagggt cattccttgt tgattggtat ctagttaata tccccaatgc ctctaggtta
     2581 ctaaccccgc gttgaattgt tcttttagat acacctattc ttgatgcaat ggtaccaatt
     2641 gacggaaaag atattgactc ccctgactca ggccattgat gcatcaatat attcagcaga
     2701 atacacatct cagtactccc aataccaaga tcaccttgca gcataaggag gctatttggt
     2761 atagccgtcc acccatgtat ggttgcatca tctccccagt gagtagtgat taatgactct
     2821 tttttttgtt ctttctgtgc gttttttgtg ctcatagatg cttttctcgc gaaaaaaaat
     2881 caaaatgtga acagttacta cctaactact cttaatataa gagtagttag gtagtaacat
     2941 gtatctttta ggatgacata aatgtcatcc atttgctctt tttttatata gaacttaagt
     3001 tgagtccact acctaagagt tatgctctta gtggctatcc aagtcgaggc ttggaagcgc
     3061 attgtacaaa attcttcctg tattggatgc gtccatacag tggtctgtta actgcggtta
     3121 agagacgcaa aaaggcctgc atatgcaggc ctttttgcta tctagaggtc aaaaatggca
     3181 agtatggaaa cagagcagca accacaacaa actactgagc aaatcgaagt aaaaacaaag
     3241 cgagtgcagt gctttattga tgggtataat ttatatcatg caattgaaga gactggtaat
     3301 aaagctcttc attgggttga tcttaaatct ttatgcaaga gataccttcc taaaaatgca
     3361 tctattgata atgttttttg gttttccgct aagccatcac atttatcaag agccataaat
     3421 gaaaattatc aaaattacac caacgcttta accgaatgtg gtgttgatgt tatcggtgga
     3481 cgttttaaaa aaaagaatgt aacgtgcgaa gctgataatg gatgtggtgg agttttccat
     3541 aagcatgaag aaaa
//
