LOCUS       NZ_CP091553             2900 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica strain 628 plasmid p628-4, complete sequence.
ACCESSION   NZ_CP091553
VERSION     NZ_CP091553.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN16419724
            Assembly: GCF_023330745.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Ruan,Z.
  TITLE     Genome sequence of Salmonella carrying the mcr gene in China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2900)
  AUTHORS   Ruan,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2022) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100X
            Sequencing Technology :: Oxford Nanopore GridION; Illumina NovaSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 14:28:27
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,094
            CDSs (total)                      :: 4,973
            Genes (coding)                    :: 4,849
            CDSs (with protein)               :: 4,849
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 53 of 124
            Pseudo Genes (incomplete)         :: 91 of 124
            Pseudo Genes (internal stop)      :: 21 of 124
            Pseudo Genes (multiple problems)  :: 39 of 124
            Pseudo Genes (short protein)      :: 1 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091553.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="628"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p628-4"
                     /geo_loc_name="China: Hangzhou"
                     /collection_date="2019-05-13"
                     /collected_by="Meina Yue"
     gene            516..1229
                     /locus_tag="INN82_RS25455"
                     /old_locus_tag="INN82_25455"
     CDS             516..1229
                     /locus_tag="INN82_RS25455"
                     /old_locus_tag="INN82_25455"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_249004917.1"
                     /translation="MPETARTRQDRAEGLSGGAAKRCYGKFTALNALKILCEALMRLLA
                     VFLCAFSLFPVCGYSANPPESRIKVYVPATGIQQDDSLFISQDNLNYITKFVSGCDGKA
                     NPWSFVLKGIYDENEGAVFIESNKPLCVADTLAIKQYLDNAIKENQVKNAKRSEREMEM
                     NARDPKRPYALGCEAYKATVRGAGDIPTIEIAKNLYPKINPVYVANLWRQGYQHASSYG
                     MRNVDCAYLAAVAGL"
                     /name="hypothetical protein"
     gene            2029..2463
                     /locus_tag="INN82_RS25465"
                     /old_locus_tag="INN82_25465"
     CDS             2029..2463
                     /locus_tag="INN82_RS25465"
                     /old_locus_tag="INN82_25465"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_249004916.1"
                     /translation="MSRLYRAALPEDYIHNPETGLWELSFDQRPVAGTRSDSPEEGAAQ
                     YNAAREKFKSAVSAVRQRPEPVFSFTEMTEWVVDHGTPEQCQAVRFMFDARDKNEFDIA
                     VREGLKVLPSHLDFAYFFGRFSDRIRVSVSLRQRLDLRLS"
                     /name="hypothetical protein"
ORIGIN
        1 ccctgaacgg gtatcgcaaa gcctgacacc gcacccgtat gttcttccgg ctctctgttt
       61 ttgctgcgat gcaggatagg gctgacgccg caaagtgacg tcatctgacg ttctctcgtt
      121 aggtaatcgg gacaggaaat gttttgtcat taccgccgct tcgcgccaat gacaaaacgg
      181 cgggacaaga tgtgtctttg gagtaccgcc ggtacgccaa agcctcctgg tcaggctctg
      241 cccgacaccc tgaaaagttt cgacgcgtcg aaatctccgc tcgttaaatc ggcccccctc
      301 tgcgtattct cagccatgcc tgacggcctg gccaacgcct cacggtcgca cagtaaactg
      361 cgcccccgtt caccgtttcc gatggggttc agtgagcctt ttgacctgtt cacaggattt
      421 tagccgctaa aattcgcgcc attcaccttc gtgcatagcc atgcaaccac gcagaaatca
      481 tcaggggcgt ttttcagggg tatggacagg gaaaggtgcc ggaaacggcc cggacgcgtc
      541 aggatcgcgc tgaggggctc tcaggcggtg cggccaagag atgttatggt aaattcactg
      601 ccttaaacgc tttaaagatt ttatgtgagg ctcttatgag attgttagct gttttcttat
      661 gtgctttttc actctttcct gtgtgtggat attcagctaa tccgccagaa tctcgtatca
      721 aagtttacgt cccagctaca gggattcagc aagatgactc cctgttcatt agccaagata
      781 atttaaatta tataaccaag tttgtaagcg ggtgcgatgg gaaagctaac ccttggagtt
      841 ttgttttaaa agggatttat gacgaaaatg aaggtgctgt ctttatagag tcaaacaaac
      901 cgctatgtgt ggccgatacc ttagcaataa aacaatattt ggataatgcg attaaagaaa
      961 accaagtgaa gaatgctaaa aggagcgagc gtgaaatgga aatgaacgca agagatccta
     1021 aacgtcctta tgctctaggt tgtgaggcgt ataaagcaac cgtcagagga gctggcgata
     1081 ttccaactat tgaaatcgcg aaaaatttat atccaaaaat taatccggta tacgtcgcta
     1141 atttgtggcg tcaagggtat caacatgcgt cctcatacgg gatgaggaat gtagattgtg
     1201 cttatttagc tgctgttgct ggcctttaga cggatctaaa tcgattttca tattagcttc
     1261 aatgccttgt taattgacag ccacgttctc atagaggtag tctcagaaac gaaaaaacca
     1321 cctggggagg tggtttttcg aaggttcagt aagttgggga acttctgaac cgtggtaaca
     1381 gtcttgtgcg agacgtgtca ccaaatctgt ccttccagtg tagccgcagt aatggcacca
     1441 cttcaagaac tcttactaca tctctcgcac atcctgttta ccagtggcta ccgccagtgg
     1501 cgctttgtcg tgtctgtcag ggttggaatc aagagaatat ttacctgatc aggcgcggta
     1561 gtcggactaa aaggggagtt cgtgcatata gtccagcttg gagcgaacca cctacaagga
     1621 acccagttgc acgggtagga atgagaaaac gccaccttac ggcggtctgc aacgggtaaa
     1681 cctcacggtg ggaacaggag agcgcacgag ggagcgaccc atcggaaacg gtggggatct
     1741 ttaagtcctg tcgggtttcg ccccttctga tttgagcgcc ggaaatcacc tgatttctga
     1801 gaagctcgtc aggagggcgg agcctatgga aaaccgggga accggaaggt ctggctcggg
     1861 gggaaagggg gggtgccgtt gatgttcgcc agagaagcgg taatctcttt tcctgttaac
     1921 cggtaacgct cgccgcagcg tttaactagc gaagtctgtt aaaccgagga agcggaatat
     1981 cgctgatgct gaggttttcg cttacacact gatgttgagg agtttccctt gtcccgtctc
     2041 taccgtgctg cacttcctga agattatatt cataaccctg aaaccggcct gtgggaactg
     2101 tcattcgatc agcgtcccgt agcgggtacg cgctctgatt ctcctgaaga aggtgccgct
     2161 cagtacaatg ccgcccgtga aaagtttaag tcggctgtgt ctgccgtccg tcagcgcccc
     2221 gaacctgtat tttcttttac cgaaatgacg gagtgggttg tggatcatgg tacgccggaa
     2281 cagtgccagg ccgtccggtt tatgtttgat gcgcgggata aaaatgagtt tgatattgcg
     2341 gtgcgtgaag gcctcaaagt gctgcccagt catctcgatt tcgcgtattt ctttggtcgt
     2401 ttctctgacc gtattcgggt ctctgtatcg ctgcgacagc ggctcgactt gcgtctttcc
     2461 tgacgtttac tcagcgtaaa ctttttggct gcgcttccta ttttaccccc tatttttacc
     2521 cctattttta tctattggaa cgcataggga gtaaaataga ggtaaaaata gggggtctga
     2581 cgcattgcat gcgccagaaa gggacatgat tttctgaacg aaaatcacgc cccaagggtt
     2641 gcgccgtgcg gcttcaccct ctctggctcc tcctcggctg aacgccgctc cgtctccaga
     2701 ttcacccggc cccgtctggc gtctctgacg cctgaccacc cccttaagac ggttactcgt
     2761 gtagctcgtc acctttaaga gggtggtcag gcgcctccgg caccgacggg ggggcactgc
     2821 ccccgctgcg caaatcgtcc gtgggcggac tcggaacgct ggggcgttcc gttgcttgcg
     2881 gctcccccga aagcacgatc
//
