LOCUS       NZ_CP091503             2176 bp    DNA     circular CON 09-AUG-2023
DEFINITION  Enterobacter cloacae complex sp. ECL404 plasmid unnamed7, complete
            sequence.
ACCESSION   NZ_CP091503
VERSION     NZ_CP091503.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25233125
            Assembly: GCF_021869625.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter cloacae complex sp. ECL404
  ORGANISM  Enterobacter cloacae complex sp. ECL404
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Zhang,X.
  TITLE     The study of the whole genome of Enterobacter cloacae complex
            carrying mcr-9 is helpful to describe the possible transmission mode
            of mcr-9
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Zhang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2022) Department of Microbiology, Yongchuan
            Hospital of Chongqing Medical University, Xuanhua Road, Yongchuan,
            Chongqing 402106, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 2.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/07/2023 04:47:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,324
            CDSs (total)                      :: 5,209
            Genes (coding)                    :: 5,026
            CDSs (with protein)               :: 5,026
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 77 of 183
            Pseudo Genes (incomplete)         :: 104 of 183
            Pseudo Genes (internal stop)      :: 21 of 183
            Pseudo Genes (multiple problems)  :: 18 of 183
            Pseudo Genes (short protein)      :: 1 of 183
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091503.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Enterobacter cloacae complex sp. ECL404"
                     /mol_type="genomic DNA"
                     /strain="ECL404"
                     /isolation_source="Drainage"
                     /db_xref="taxon:2912631"
                     /plasmid="unnamed7"
                     /geo_loc_name="China: Chongqing"
                     /collection_date="2020-10-05"
     gene            join(1956..2176,1..121)
                     /locus_tag="L3071_RS26595"
                     /old_locus_tag="L3071_26595"
     CDS             join(1956..2176,1..121)
                     /locus_tag="L3071_RS26595"
                     /old_locus_tag="L3071_26595"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_236904548.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRRAAPLIADFGGLVVLTLRNHLRFTRVHNDS
                     CAQKSPERF"
                     /name="hypothetical protein"
     gene            complement(283..708)
                     /locus_tag="L3071_RS26600"
                     /old_locus_tag="L3071_26600"
     CDS             complement(283..708)
                     /locus_tag="L3071_RS26600"
                     /old_locus_tag="L3071_26600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676030.1"
                     /GO_function="GO:0005515 - protein binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="WP_015328245.1"
                     /translation="MGSYVDQSLTRNESVISRAQTSWIPTIIPVIIGILLLPFYGLGLL
                     IIIPVLLRVWSTELALTNQRVIAKVGLIRRNTVELRIDKVESLGIHQGILGRIFNYGSI
                     VIKGTGGTNTPIPNIKAPMQFRSIVNNHIEEMNSKQQ"
                     /name="PH domain-containing protein"
     Typing          1620..1792
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.659"
                     /coverage="100.0"
                     /evalue="9.74e-41"
     Typing          complement(1157..1673)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.692"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 gcgcgccgcg ccgctgattg cggattttgg cggtttagtg gtgctgacgc tgcgaaatca
       61 cctgcgattc acccgcgtgc ataacgattc atgcgctcaa aaatcaccag agcgtttctg
      121 aacgtttttc aggaggtcat acgtgttctt ttgcgtatta gggcggagaa acgccctgag
      181 agcctctgag gcggtgcggg caacgggtgt tatggtaaat ccagctgatt ggcaggtaca
      241 aaaaaagccc cgtagggctt tttttgtaat gctacgagga agctactgct gcttagaatt
      301 catttcctcg atatgattgt tcacaatcga tctgaattgc attggcgcct tgatgtttgg
      361 aattggagtg ttggttccgc cagtgccttt aatcacgata gacccatagt taaagattcg
      421 tcccagtatc ccttgatgta tgccaaggct ttcaacttta tcaatacgga gttccaccgt
      481 attgcgtcgg atcaaaccca cttttgcgat gactctttgg ttagttaatg caagctccgt
      541 tgaccaaact ctaaggagca cagggattat tataagtaac cctaagccgt aaaaaggcag
      601 caacaagatt ccgataatta ctgggatgat tgttggaatc caggaggttt gagcgcgaga
      661 tattacggat tcatttcttg tcaatgattg gtctacgtag cttcccataa ggttatatcc
      721 atttagaaaa aataggattt ttcccttttt aaggcgaatc agcaatagaa actttatgtc
      781 tccgtggtag gtatacaaaa tttacggaga gcgtagcgac cgtcgcacag ttcggttctt
      841 tcctttcgtg ccgcaactgg cttgattctg tgatggtggt ggtggctgct gctatgtctc
      901 atatactctt ggcgttgcaa tcctttatcc catatctgtc gaatatcaca gatgatcttc
      961 ttgagatctt gtccgttgcg tcgtaatctc ttgctctgga aacgaaaaaa ccgccctgca
     1021 aggcggtttt tcgaaggttc tcagagctac caactctttg aaccgcggta actggcttgg
     1081 aggagcgcag taaccaaatc tgtcctttca gtttagcctt aacaggcgca taacttcaag
     1141 actaactcct ctaaatccgt taccaatggc taccgccact ggcgatttgt cgtgtctttc
     1201 cgggttggac tcaagttgat agttaccgga acgggcgtgg tagtcggact gaacgggggg
     1261 ttcgtgcata cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg
     1321 aatgagataa acgcggccat aacagcggaa tgacaccggt acaccgaaag gcaggaacag
     1381 gagagcgcac gagggagcta ccagggggaa acgcctggga tctttatagt cctgtcgggt
     1441 ttcgccacca ctgatttgag cgtcagattc tgtgatgctt gtcagggggg cggagcctat
     1501 ggaaaaacgg cagcgccgca tcctttttct gccccgtttg tcatggcata tgcctttgct
     1561 cttctccgtg tgcaggtaac gcccgccgca gccgaacggc aggagcgtcc gcgactgagt
     1621 gagcgaggag gcgtcatatc ctctgaactt ccattttctg ccttacgccc gcagctgcat
     1681 tttcctctgt cacatgaagc actttcctga ttaccgcact catgccaaca taataagcca
     1741 gtatacactc cgctagcgct acgtgactgg ttcagggctg cgccccgaaa cccgctaaat
     1801 ccactgacgc gcctgcggct tgtccaacgc ctcacggcac cggattaaaa tccgctcccg
     1861 ttcaccgttt ctgactgcct ttcaccgtcg cttacgcttc atcgttccta ctgtgtctgg
     1921 cagactgctg ggactattct catacggaga taaacatgac gagacttaca aacctgaccc
     1981 ccgctgagaa aaagtttatc gacgacgcta tagccgctgc cgaacgtgcg gccgggaaga
     2041 agctcaatca gcctaaccgg cacatcgttc tgaacagagc gcgtgcgcag attgagtcgc
     2101 agcgttacgc cgaccgccag cgtgcattac gtgaggatga gcggcagcag tccgattttg
     2161 cctggtcacg tccgcg
//
