LOCUS       NZ_CP091502             2747 bp    DNA     circular CON 09-AUG-2023
DEFINITION  Enterobacter cloacae complex sp. ECL404 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP091502
VERSION     NZ_CP091502.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25233125
            Assembly: GCF_021869625.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter cloacae complex sp. ECL404
  ORGANISM  Enterobacter cloacae complex sp. ECL404
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Zhang,X.
  TITLE     The study of the whole genome of Enterobacter cloacae complex
            carrying mcr-9 is helpful to describe the possible transmission mode
            of mcr-9
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Zhang,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JAN-2022) Department of Microbiology, Yongchuan
            Hospital of Chongqing Medical University, Xuanhua Road, Yongchuan,
            Chongqing 402106, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 2.2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/07/2023 04:47:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,324
            CDSs (total)                      :: 5,209
            Genes (coding)                    :: 5,026
            CDSs (with protein)               :: 5,026
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 77 of 183
            Pseudo Genes (incomplete)         :: 104 of 183
            Pseudo Genes (internal stop)      :: 21 of 183
            Pseudo Genes (multiple problems)  :: 18 of 183
            Pseudo Genes (short protein)      :: 1 of 183
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091502.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Enterobacter cloacae complex sp. ECL404"
                     /mol_type="genomic DNA"
                     /strain="ECL404"
                     /isolation_source="Drainage"
                     /db_xref="taxon:2912631"
                     /plasmid="unnamed6"
                     /geo_loc_name="China: Chongqing"
                     /collection_date="2020-10-05"
     gene            5..193
                     /locus_tag="L3071_RS26575"
                     /old_locus_tag="L3071_26575"
     CDS             5..193
                     /locus_tag="L3071_RS26575"
                     /old_locus_tag="L3071_26575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(241..468)
                     /locus_tag="L3071_RS26580"
                     /old_locus_tag="L3071_26580"
     CDS             complement(241..468)
                     /locus_tag="L3071_RS26580"
                     /old_locus_tag="L3071_26580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223229632.1"
                     /translation="MFGFSPGELMNLCPDERLLFVRMISAMLRRSGGDAGAVMFEAYRH
                     IVSDTNQARRSYMLDLLESVRHDYVHDGYT"
                     /name="hypothetical protein"
     gene            <1758..1859
                     /locus_tag="L3071_RS26585"
                     /old_locus_tag="L3071_26585"
                     /pseudo=""
     CDS             <1758..1859
                     /locus_tag="L3071_RS26585"
                     /old_locus_tag="L3071_26585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011847251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /name="IS30 family transposase"
     gene            complement(2048..2557)
                     /locus_tag="L3071_RS26590"
                     /old_locus_tag="L3071_26590"
     CDS             complement(2048..2557)
                     /locus_tag="L3071_RS26590"
                     /old_locus_tag="L3071_26590"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045270081.1"
                     /translation="MFNLAVQHSYHRTYRPLVVFRTIFICIICILLYYFFKLERWGNNN
                     MNGMSDVRLKKSTIESLKEYVNDFGMTVDDVVLNLIEENNSLKSLLGQGFSLPGGDKDT
                     HSFKDYVIHKLPKGKILVTKDGLKVSNMKKVLIEAGSAVGMDDKELNPDFTTYEIGRFL
                     FKHLQG"
                     /name="hypothetical protein"
     Typing          942..1437
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.171"
                     /coverage="82.0"
                     /evalue="0.0"
ORIGIN
        1 ccgtatgaca aaacaggaat cagccgcact gaacatggca aaatttatcc gggcgcagtc
       61 gctgctgctg ctcgaaaaac tcgacgtgct cgatcttgat gacgaggcag ccgactgtga
      121 gcgaatgcac gaacaggcag aagcgcttta tcagaagctg agcgcacgct tcggtataca
      181 ggacggcgaa taaagagacg aaaagaacgc tcacttagac gaaaagcgta tccagggcaa
      241 ctatgtatat ccatcgtgta catagtcatg cctgacgctt tcgagcaggt cgagcatgta
      301 ggaacgacga gcttgattgg tatcggacac aatatggcga tacgcctcaa acataacagc
      361 acccgcatca ccgcccgaac ggcgaagcat agcggaaatc atccgcacaa agagcagacg
      421 ttcatcgggg caaaggttca taagttctcc tggtgaaaaa ccaaacatga aagcacccat
      481 ctattaacgt cagctgtgaa cgcttcatta gaagaaaata ggtaaacccg ggaaaaagat
      541 ccaaacgtta acatcacagg taaacagaaa cgtcgggtcg atcgggaaat tctttcccgg
      601 acggcgcggg gttgggcaag ccgcaggcgc gtcagtgctt ttagcgggtg tcggggcgca
      661 gccctgaacc agtcacgtag cgctagcgga gtgtatactg gctaaacttc agagatgcca
      721 aggaagggac aggatatgtt ttgtagcacc gccaccacgg tggcgatact ccaaaacgcc
      781 tggtcagggc acagccccga caccccagag ccgactgtag gtcactggac gaacgcggcg
      841 gaatgatgtc ggatgacgtc attttgcggc gtttgcccta tcctgcatcg tattaaaaaa
      901 tgcagctatg gcgcgtacgg tgccaaagat aagcccggag atattccgct tcctcgctca
      961 ctgactcgct ccgctcggtc gttcggctgc ggcgagcggt accggcttac tggcggggcg
     1021 gaaatttcct ggcatcttcc aggaagaagc ttaacaggga agcaagaagg ccacggcgaa
     1081 gccgtttttc cataggctcc gcccccctga caagcatcac gaaatctgac gctcaaatca
     1141 gtggtggcga aacccgacag gacttaaaga taccaggcgt ttccccctgg tggctccctc
     1201 gtgcgctctc ctgttcctgc ctttcggttt accggtgtca ttccgctgtt atggccgcgt
     1261 ttatctcatt ccacgcctga cactcagttc cgggtaggca gttcgctcca agctggactg
     1321 tatgcacgaa ccccccgttc agtccgaccg ctgcgccttg tccggtaact atcgtcttga
     1381 gtccaacccg gaaagacacg acttaacgcc attggcagca gccattggta agaggattca
     1441 cggagcaggg tagtagagtg cttctacaga gttcttgaag tggcggcctg actgcggcta
     1501 cactggaagg acagttttgg tatctgcgct ccgtgaaagc cagttacctt cggaagaaag
     1561 agttggtagc tcttgattcc ggcaaacgaa ccaccgttgg tagcggtggt ttttttgttt
     1621 acaggacatg agattacgac gagagtaaaa ggatcacaag aagatccggc tgtttaccag
     1681 tgatttggct tcagtattgg tttccgccta gcggggcctt atacgtaaaa attccacacc
     1741 tgacttatca cacaggggag ctccgcaagt accagagagc actgaatagc aggccacgga
     1801 aatgtcttgg attccggcaa ccttcagtgg tctttgctga gctaagacag gcggcttagc
     1861 gttgcacttc gaacttgaat ccgcccagaa gcattcagca gaagtcgcta acggtttgct
     1921 tgcaaatgct atcaataatg ctttgcctaa agcaggaata aaaaagccac ctacacggtg
     1981 gctttttttc tgtccgggaa ctagctgaat tgaacctaaa atcccggcca cgaactggta
     2041 gacaccttta tccctgaaga tgtttgaaga gaaaacggcc tatttcatag gtcgtaaagt
     2101 cagggtttag ctctttatca tccatcccta cagcgctccc tgcctcgatc aataccttct
     2161 tcatgttgct aactttaagc ccgtctttgg taaccaagat ctttcctttt ggaagcttat
     2221 gaatcacgta atccttgaag gaatgtgtgt ccttatctcc accaggcaaa gaaaagccct
     2281 gacctaataa cgattttaat gaattattct cttcaattaa gttcaggaca acatcatcaa
     2341 ccgtcatgcc aaagtcattc acgtactctt ttaggctctc aatagttgat ttctttagtc
     2401 ttacgtcaga cataccattc atattattat taccccaccg ctctaatttg aagaaataat
     2461 acaacaaaat acaaattata caaataaata ttgttctgaa tacaacaagc ggtctgtagg
     2521 tgcgatgata actatgctgc accgccagat tgaacataac atccgttgcg tgcaccgcct
     2581 gagaggctct cagggcgttt ctacgacctc acctgcaaaa gaacacatct taccccctga
     2641 aaaccgctca gaaacgcgct gatgatttct gcgtacctgc atggctatgc actcaagtga
     2701 atgaagtaag atttcagtct gcgatcacca taaaaccggg aaaaagc
//
