LOCUS       NZ_CP091184             4076 bp    DNA     circular CON 31-JAN-2024
DEFINITION  Aeromonas caviae strain SCLZS52 plasmid p8_SCLZS52, complete
            sequence.
ACCESSION   NZ_CP091184
VERSION     NZ_CP091184.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25038853
            Assembly: GCF_021609985.1
KEYWORDS    RefSeq.
SOURCE      Aeromonas caviae
  ORGANISM  Aeromonas caviae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales;
            Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 4076)
  AUTHORS   Zhang,L. and Li,Y.
  TITLE     To characterize the genomic characterization of Aeromonas caviae
            SCLZS52
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4076)
  AUTHORS   Zhang,L. and Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JAN-2022) Department of pathogenic biology, Southwest
            Medical University, No.1 Section 1, Xiang Lin Road, Longmatan
            District, Luzhou, Sichuan 646000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Oxford Nanopore; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/31/2024 05:33:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,727
            CDSs (total)                      :: 4,566
            Genes (coding)                    :: 4,418
            CDSs (with protein)               :: 4,418
            Genes (RNA)                       :: 161
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 123
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 111 of 148
            Pseudo Genes (internal stop)      :: 18 of 148
            Pseudo Genes (multiple problems)  :: 19 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091184.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Aeromonas caviae"
                     /mol_type="genomic DNA"
                     /strain="SCLZS52"
                     /isolation_source="wastewater"
                     /db_xref="taxon:648"
                     /plasmid="p8_SCLZS52"
                     /geo_loc_name="China:Luzhou"
                     /lat_lon="28.89 N 105.44 E"
                     /collection_date="2019-08"
     gene            complement(join(4013..4076,1..281))
                     /locus_tag="L1871_RS23570"
                     /old_locus_tag="L1871_23565"
     CDS             complement(join(4013..4076,1..281))
                     /locus_tag="L1871_RS23570"
                     /old_locus_tag="L1871_23565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011977836.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="WP_236277423.1"
                     /translation="MTKAVKAPLRGDVVILDFNPQAGHEQAGTRPALVISADIFNATTG
                     FIVACPITNQVKGYPFEVHVTGSQQTTGVVLSDQFKSLDWRSRRARTVDSVDQATVDAV
                     VSFAAKIIQA"
                     /name="type II toxin-antitoxin system PemK/MazF family
                     toxin"
     gene            complement(278..508)
                     /locus_tag="L1871_RS23575"
                     /old_locus_tag="L1871_23570"
     CDS             complement(278..508)
                     /locus_tag="L1871_RS23575"
                     /old_locus_tag="L1871_23570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011977835.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="WP_199428745.1"
                     /translation="MIAAIGKWGNGAGLRIPQPFLKQLGLAIGDAITFRVTEKEIIITK
                     SGPTLEELLSQCTAENRHSEVFSDSCGKELL"
                     /name="AbrB/MazE/SpoVT family DNA-binding domain-containing
                     protein"
     gene            857..1099
                     /locus_tag="L1871_RS23580"
                     /old_locus_tag="L1871_23575"
     CDS             857..1099
                     /locus_tag="L1871_RS23580"
                     /old_locus_tag="L1871_23575"
                     /inference="COORDINATES: protein motif:HMM:NF025107.4"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_236277426.1"
                     /translation="MLLIHIISFSHKATSPAFPSITTLASRLDQHPRTVQRTIGRLVAK
                     GIVNKIIRSKSSHDLGMTNIYSLDPLKVKLSHMTF"
                     /name="helix-turn-helix domain-containing protein"
     gene            1358..1795
                     /locus_tag="L1871_RS23585"
                     /old_locus_tag="L1871_23580"
     CDS             1358..1795
                     /locus_tag="L1871_RS23585"
                     /old_locus_tag="L1871_23580"
                     /inference="COORDINATES: protein motif:HMM:NF016255.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ProQ/FINO family protein"
                     /protein_id="WP_236277424.1"
                     /translation="MHNTKPRAVLSLKKTSPQSEITQAPPTPQQSTATPKKRKIPAAFP
                     CLQTHWPELFNLKHPTPLKIGILVPIIASLKQEDEPYTDNQIGKAIGWYCRRFEYLKAL
                     TNAPHRVGIDGNTFPISDQDRQNAMKQIKARLKEARACPKR"
                     /name="ProQ/FINO family protein"
     gene            complement(1868..2110)
                     /locus_tag="L1871_RS23590"
                     /old_locus_tag="L1871_23585"
     CDS             complement(1868..2110)
                     /locus_tag="L1871_RS23590"
                     /old_locus_tag="L1871_23585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005321398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication protein RepB"
                     /protein_id="WP_236277425.1"
                     /translation="MEEIKAKWVFEQGGFAKAVIAPTPMGVGYHLHLVKFGRNAETEVL
                     ERQRGGWRVFKTIDAGVNTAHTIGFRRIEVDLSSR"
                     /name="plasmid replication protein RepB"
     gene            2829..3029
                     /locus_tag="L1871_RS23595"
                     /old_locus_tag="L1871_23590"
     CDS             2829..3029
                     /locus_tag="L1871_RS23595"
                     /old_locus_tag="L1871_23590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006473284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_104456150.1"
                     /translation="MNQKGNLKDIPEEQFSKYDVADHLTSRVEIAAYLEAAKEENDPSL
                     LAAVMEDIHRIEARQSKGDSQ"
                     /name="hypothetical protein"
     Typing          complement(1869..2110)
                     /name="rep_cluster_2022"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.296"
                     /coverage="100.0"
                     /evalue="6.060000000000002e-109"
ORIGIN
        1 tcaaccgttc tagctctgcg actacgccaa tccaaggact taaactgatc cgacagaaca
       61 acacctgttg tttgctgaga tccagtaaca tgaacctcaa atggataccc tttaacttga
      121 tttgttattg ggcaagccac aataaatccg gtcgtggcgt tgaagatgtc cgcagaaata
      181 acaagagcag gccgagtacc tgcctgctca tgtcctgctt gtggattaaa atccagaatg
      241 acaacatccc ctcttaacgg ggctttaact gctttcgtca caacagctcc ttaccacaag
      301 aatcactgaa cacttcagaa tgacgattct cagctgtgca ttgacttagc agctcttcaa
      361 gagttgggcc tgacttcgta atgatgatct ctttctcggt cacccgaaaa gtgatggcat
      421 caccaatagc taaacctagc tgcttcaaga acggctgagg aatacgcaag ccagcgccat
      481 taccccactt acctatcgca gcgatcataa tacctccaaa cagtacggat acacaatgtg
      541 tataccctaa ttgcaagtgt acgcgcccat ctgtaccatt acaccgtggc gctagcgcca
      601 ccccaatagt gaaaccacta ccaatactta taaatattct atttataagt attggtagtg
      661 gtttcaaacg caccaaataa aaaaatgttc gttatttcgt taaatcatta tgcgagcaag
      721 ccatatgaga gcagaacgga taccgaaaga gctacttggc aaatgggggg gggccgtttt
      781 ggagaagggg tggaccaaca tccctaatgc tcttcttgag aaacagtcag agttaaaatt
      841 aaccaactca gaaatgatgc tgctaataca catcatctcc ttttctcaca aagcaacatc
      901 ccctgcattc ccctcaataa cgacgctagc atcacgacta gatcagcatc caagaacagt
      961 ccaaagaacc attgggcgcc ttgtagccaa agggatagta aacaaaatca ttagatcgaa
     1021 aagctctcat gatctgggca tgacaaacat ctacagccta gacccactga aagtaaaact
     1081 atcgcacatg accttttaag agatgcgcat aacgcctttt atgttcaatt gcgattttta
     1141 gcagctaaaa cggggcgcag gcggcaaacg ggccgcctgt atcgcgtttt gcggcgtttc
     1201 gacacacaag gcagggcatt tactgcctga aagtttgcaa cgcttctgag gctgtttgag
     1261 ggccggatac tgcggggtat ggtttcggcc tgtttttgca tcctgatggg ggtttcgata
     1321 acttgcctgc aaacatcact tccgcaggta tacgcccatg cacaacacca agccccgtgc
     1381 agtactgagc cttaaaaaga cctcaccaca gtctgagata acccaagccc ccccaacacc
     1441 acaacagtcc accgcgacac cgaagaagag aaaaattcca gcggctttcc cttgcctaca
     1501 aacgcactgg cccgagctat tcaacctcaa acatcccact ccactgaaaa tcgggatcct
     1561 cgtccctatc atcgccagcc tgaagcaaga ggacgaacct tacaccgata accagattgg
     1621 gaaggccatt ggctggtatt gccgcagatt tgagtacctc aaagccctca ccaatgcccc
     1681 tcatcgagta ggcatagatg gcaacacatt tcccatcagc gaccaagacc gccagaacgc
     1741 gatgaagcaa atcaaagcac gcctcaaaga ggccagagcc tgccccaaac gatgaactcc
     1801 caaacgagag cgactagcgc agtctgtcgc gcctcgttcg ggagtcggca agcgcagcgc
     1861 ggcagtctta acgactgcta agatccacct cgatgcgacg aaaaccgatg gtgtgcgccg
     1921 tgttaacccc tgcatcgatg gtcttaaaga cccgccagcc tccgcgctgg cgttccagca
     1981 cttccgtttc tgcattgcgg ccaaacttca ccaggtgaag atggtagccg acacccatcg
     2041 gggtcggggc gatcaccgcc ttggcaaagc ccccttgttc aaatacccac ttcgccttga
     2101 tctcttccat atcaaaagcc cgttttgatg gttcatatct acgttatgac accagcgcag
     2161 ccaaacatca aattataatt acgaaccatc aaattctaat tttgattggc atcactcagg
     2221 ttcgtagaac cgcactcggg tttcaaaggg gcgacccttt ggcacgccga taggatgcag
     2281 gcacgccgac ggtacaaacg cagtttgtat acgctcggtc tcgtgcctgt atacagtcgg
     2341 tgtcgtgcct gaaggcagtg aatcatgttc taacgggcgg gcggagggat acacaaagag
     2401 acacaaaaaa gggcacacac tacaaagcac aggacacaca aagaggcaca taaaaggaca
     2461 cgaaatcagt tggttggaca caaaacagga cacacaatgg ggcgcattca agacttacgg
     2521 ggttgtatga gggagatcca aaaagaaagt gtccataggg aatgaaaaaa ctgctcaacc
     2581 gccaacccct acagaaagcc tactaaagcc ctaccgttca cccacagaac acctactgca
     2641 tacctactgc atacctacgg aatgcctaca aaatggatta cagaatgaag tacatggagc
     2701 taagggagat gacaaaatag ggtacaaaac ggatgacagg ttacgagccc acaaaaagac
     2761 ctacaaaata gcccacacct cacccaagcg acccacaaaa aaccccacaa aatcggatgg
     2821 ctaatttgat gaatcaaaaa ggtaatttga aggacattcc agaggagcaa ttcagtaagt
     2881 acgacgttgc ggaccatttg actagccgtg tggagatcgc ggcataccta gaagccgcca
     2941 aggaagagaa cgatccatcc ctccttgctg ctgtcatgga ggacattcac cgaatcgaag
     3001 cacggcagag caaaggagac agccagtgac atatcgccca ttgacgacaa aggaaatggc
     3061 agagctacgg gaagagatga gggctgccgg agaatgggcg agaacggtct tagggcaaga
     3121 gcggcggcaa acgcgagcag tttgcgaatc ctgccctagc acctcaaatt tcgtacgtac
     3181 gaaaaaacca accccgctcc gtggataagc cctactgccc acaggccaaa aacacggcct
     3241 gatggacagc ccttcgggaa cgggcttaac cacctcgcca agatcctctc tctattatga
     3301 agagctcaaa gaacagccca aagaccgcgc aaaaaggatg tcgcaaagct ccccagttag
     3361 caggctctcc tatctttccg ctgcgcttca agataggaga gccctcctgc ttggctacgt
     3421 taaaaatgac gtagttacac aagattgact cgccttgctc cggactatcg agaccgcttg
     3481 cggcagctcc ctctcacgcg ctccagagac acaccccgtc cttgctgcat ctgctttagt
     3541 ccccgcctga tggccagact gccgcgccgt tttttaagag ctggccgtgg ttggttcccc
     3601 gttacgctct gcttgcaaat gccccacggt tgcgaatcgt gggcggctgt ggtgcgcgat
     3661 cgcacgctgg gcagtatgtg agatttcccc gttctgcccg accaaccaca cccacacacg
     3721 gcaacaaact catgcttcca atccgtgcgg gtacgacaaa gcgccaaagg tggtggcctt
     3781 cggtaacggg tcttgttgcg ggaaaagctt gattggatgg ccgagaggcc gctaaactaa
     3841 ttaggacttt tggtagctgc ttcccgcaat ggagccgtta ccaggtgaag tcggttcccc
     3901 aactgactac accttcgaac aaaccgcctg ccagggcggt tttttcgttt tatggtcgta
     3961 ggttacgctg tcacactcga acagatcaac acacaaccta aaaaatcaac gcttaagcct
     4021 gaatgatctt cgcggcaaaa gagaccacag catccaccgt agcctgatcg acagaa
//
