LOCUS       NZ_CP091183             5515 bp    DNA     circular CON 31-JAN-2024
DEFINITION  Aeromonas caviae strain SCLZS52 plasmid p7_SCLZS52, complete
            sequence.
ACCESSION   NZ_CP091183
VERSION     NZ_CP091183.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN25038853
            Assembly: GCF_021609985.1
KEYWORDS    RefSeq.
SOURCE      Aeromonas caviae
  ORGANISM  Aeromonas caviae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales;
            Aeromonadaceae; Aeromonas.
REFERENCE   1  (bases 1 to 5515)
  AUTHORS   Zhang,L. and Li,Y.
  TITLE     To characterize the genomic characterization of Aeromonas caviae
            SCLZS52
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5515)
  AUTHORS   Zhang,L. and Li,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JAN-2022) Department of pathogenic biology, Southwest
            Medical University, No.1 Section 1, Xiang Lin Road, Longmatan
            District, Luzhou, Sichuan 646000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Oxford Nanopore; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/31/2024 05:33:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,727
            CDSs (total)                      :: 4,566
            Genes (coding)                    :: 4,418
            CDSs (with protein)               :: 4,418
            Genes (RNA)                       :: 161
            rRNAs                             :: 11, 10, 10 (5S, 16S, 23S)
            complete rRNAs                    :: 11, 10, 10 (5S, 16S, 23S)
            tRNAs                             :: 123
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 111 of 148
            Pseudo Genes (internal stop)      :: 18 of 148
            Pseudo Genes (multiple problems)  :: 19 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091183.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5515
                     /organism="Aeromonas caviae"
                     /mol_type="genomic DNA"
                     /strain="SCLZS52"
                     /isolation_source="wastewater"
                     /db_xref="taxon:648"
                     /plasmid="p7_SCLZS52"
                     /geo_loc_name="China:Luzhou"
                     /lat_lon="28.89 N 105.44 E"
                     /collection_date="2019-08"
     gene            complement(567..1001)
                     /locus_tag="L1871_RS23535"
                     /old_locus_tag="L1871_23530"
     CDS             complement(567..1001)
                     /locus_tag="L1871_RS23535"
                     /old_locus_tag="L1871_23530"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128274419.1"
                     /translation="MNNQIYWGQTVGAAIVSVVMFFLLLYIAAPIIESLLNLYGLIFVP
                     ERYGGGSEVDNPGFLTLAFRAIVASSLAAVGAFMASFKLFSSAHAKTVAAVFGLIVVAW
                     CGLFVVAGLSSSAVLMPLLIVVLGAVPPLFVAYWAWQGGF"
                     /name="hypothetical protein"
     gene            complement(1021..1362)
                     /locus_tag="L1871_RS23540"
                     /old_locus_tag="L1871_23535"
     CDS             complement(1021..1362)
                     /locus_tag="L1871_RS23540"
                     /old_locus_tag="L1871_23535"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128274417.1"
                     /translation="MHYKTTAVLITLALGGCVSTSNVLEVGKDTYSVSATADGFRDAAS
                     ARQSAFNSGAEKCNSLGKKFMFLNENTAKTRMDIDTTVTIYFRCLNENDSEYTRPGIEK
                     SPDLVIEER"
                     /name="hypothetical protein"
     gene            1677..1916
                     /locus_tag="L1871_RS23545"
                     /old_locus_tag="L1871_23540"
     CDS             1677..1916
                     /locus_tag="L1871_RS23545"
                     /old_locus_tag="L1871_23540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system CcdA family
                     antitoxin"
                     /protein_id="WP_128274415.1"
                     /translation="MVAAAMRSKRTVSVTLEPSLLERARAAGINLSATLATALQHEISG
                     SEADRWKRENRDAIQTLNRMVEERGLFSDDHRTF"
                     /name="type II toxin-antitoxin system CcdA family
                     antitoxin"
     gene            1916..2224
                     /locus_tag="L1871_RS23550"
                     /old_locus_tag="L1871_23545"
     CDS             1916..2224
                     /locus_tag="L1871_RS23550"
                     /old_locus_tag="L1871_23545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014839830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdB family protein"
                     /protein_id="WP_128274413.1"
                     /translation="MQFTIYRNKGNARVYPYLLNVQSDIIGELHTRMVIPLVPLADFTG
                     RPAQRLNPVITVEGGKYLVLTHEMAAVRLAQLGEEVTEVQESRQLVKDAIDFLLDGV"
                     /name="CcdB family protein"
     gene            complement(3119..3361)
                     /locus_tag="L1871_RS23555"
                     /old_locus_tag="L1871_23550"
     CDS             complement(3119..3361)
                     /locus_tag="L1871_RS23555"
                     /old_locus_tag="L1871_23550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005321398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication protein RepB"
                     /protein_id="WP_103859311.1"
                     /translation="MEELQAKWTFDQGGFAKALIAPTPMGAGYHLHLVKFGKQSETIVL
                     ERQRGGWRVFKSIDAAANTANGIGFRRIEIDLSSR"
                     /name="plasmid replication protein RepB"
     gene            complement(3420..3704)
                     /locus_tag="L1871_RS23560"
                     /old_locus_tag="L1871_23555"
     CDS             complement(3420..3704)
                     /locus_tag="L1871_RS23560"
                     /old_locus_tag="L1871_23555"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_128274411.1"
                     /translation="MEQWVRERVDTYLRHGGKTSRRAMVKRLIAILLDIRQYEPGVRQP
                     PQIGRAHIHRYWARQSQLADRTRQDHWYALCLLWALLERPGEPPKPPLV"
                     /name="hypothetical protein"
     gene            complement(3714..4682)
                     /locus_tag="L1871_RS23565"
                     /old_locus_tag="L1871_23560"
     CDS             complement(3714..4682)
                     /locus_tag="L1871_RS23565"
                     /old_locus_tag="L1871_23560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase domain-containing protein"
                     /protein_id="WP_236277422.1"
                     /translation="MARCDRANPDSRNFGLGSRDMGYAGRSALREGMQSHSSIATMADR
                     WGQFASWAREEAGIRDMRHIETATLRGYAAHLIARLEQGEISPATAQNALSAVNRVMEI
                     ARGDRAVRLDPVREAGLPTRSGIATTDHAVPVSQHDTAVAAVSERVGALLSLQRSLGLR
                     FEEAAKLDAQRALAQAERHGQIRIEDGTKGGLVRQVPCQSPAQHHALAQAAAQQEGRSL
                     IPPSMSYKDFRTAAYSELRSAGIRSHGERHAYAQGRYETLVGAPAPVAAGIGHGADHHR
                     FLAAQLGIEVAAARELDLQAREQVAAELGHGRIDVTNAYLG"
                     /name="integrase domain-containing protein"
     Typing          complement(3120..3295)
                     /name="rep_cluster_2037"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.655"
                     /coverage="94.0"
                     /evalue="1.04e-65"
ORIGIN
        1 ccgctttgcg tggcagccac tcggtactgg ctgtgtttgg ggaaattcag gcatgacaaa
       61 tcgccccagg gaccacatgt cccttgagga cgtcatggtc gtgaggtgat tcgacagcgc
      121 aaagcgaatt acacactcga aagtgattta ggccgggctg ttaggctcgg cgagctagtg
      181 attaggcccc acagggataa atcaccttaa atctgcatcc ctatcctgtc aagcctcagc
      241 ccgtgcggcc tcctgctcgt ctggcgtccc tgtggcgtag atctgggcca ctcaccgccc
      301 agtttggccg aaaccggata ggccagagat cgcggccaaa acctctccca aaccgtcgca
      361 aactttcagc cgccaaaccg cctcggcagc cctgcctgag cactctaaat ggcccctctg
      421 ctgccagaac ggggcgaacg gcccgttttc cctggtaaaa aggccaatta aacataatgg
      481 gcattatgtg caccgcattc tggggggcaa accacaaaaa atcccaatat tcctgatcga
      541 cggcgagacg actgcaatgt tagaactcag aacccccctt gccatgccca atatgccaca
      601 aacaacggtg gtacagcgcc gagaacaact attagcaatg gcattagcac cgcactagat
      661 gacaatccag caacaacaaa tagcccacac caagcaacga cgatcaagcc aaagacagca
      721 gcgacggttt ttgcgtgggc acttgagaat agtttgaagc tggccatgaa agcgccgact
      781 gccgcgaggc tagaagccac gatggctctg aatgcaagag taaggaagcc agggttatct
      841 acttcgcttc cgcctccgta acgttcagga acgaagatta aaccgtaaag atttaatagc
      901 gactcaatga tgggggctgc gatgtaaagg agcagaaaga acatcacgac gctgactatc
      961 gcagccccta cggtttggcc ccaatagatc tgattattca tggctgggtc ctaacaattt
     1021 ctatctttcc tcaatgacca agtcagggct tttctctatc cctgggcgag tatattcgct
     1081 gtcattttca tttaaacaac ggaagtaaat ggttaccgta gtgtctatat ccattctggt
     1141 ttttgcagtg ttttcattca aaaacatgaa ttttttacca aggctattac acttttccgc
     1201 ccctgagttg aatgcacttt ggcgggcgga tgctgcatca cggaatccat ccgcagtggc
     1261 tgataccgaa tatgtgtctt taccaacctc aagaacgttg ctcgtagaga cgcaaccacc
     1321 caaggcgaga gtaatcagca ctgccgttgt cttgtaatgc attgatttta ttatccttat
     1381 tgttatagag atgggtgatt gtggatcatc caactctatc ctttttttta tataaaaatc
     1441 aaagcattcg gtgattacgg aacggccagt ggtggctgta actggtactg gtttggtgct
     1501 gaggtgtatc ccggtctgtc accgcgcaga aggggcgtta cggtaaaccg gcggccttct
     1561 gcgcctgctg gcggctcctg caacgaaggc gacagactac gctagtcgcc ctcgttgcag
     1621 gagcgtgata ctatcaagca cgtgctatta cacgtgtcac cttattggag gtcatcatgg
     1681 tcgcagcagc tatgcgcagc aagagaacgg tcagcgtcac gctggagccc agcctgctgg
     1741 aaagagccag ggcagcaggg atcaacctgt cagccaccct tgccaccgcg ctacagcatg
     1801 agatcagcgg ctcagaggcc gaccgctgga agcgtgagaa cagagacgca atacaaacac
     1861 ttaaccggat ggtcgaagag cgcggcctgt tttctgacga tcacaggacg ttctgatgca
     1921 gttcacgatc taccgcaaca agggcaatgc ccgtgtctat ccctatttac tgaatgtgca
     1981 gagcgacatc atcggcgaac tgcacacccg gatggtgatc cccttggtcc cgctggcgga
     2041 cttcactgga cggcctgcac agcggcttaa cccggtgatc accgtcgagg gtggcaagta
     2101 tctggtgttg acccacgaaa tggctgcggt gcggctggcg cagttagggg aggaagtgac
     2161 cgaagttcag gagtctcgtc agctcgtcaa ggacgcgata gatttcctgc tggatggtgt
     2221 ttgaaggtgt ttgtaccgcg cagaaggggc gttacggtaa accagcgccc ttttttattt
     2281 acaaagaatt cagatgaatt gacgatcctg aaggatccag cgtaacctgc tcgccagaaa
     2341 cgaaaaaacc acccggcaag gtggtttatt cgaaggtact ccgagttaga gctctttgta
     2401 cctggtaacg gctccgaaga gggaagcagc tacctaaagt cccaataagt ttagcggctc
     2461 catgccgtct ttttcaagct aattccctct ctaagaccgt taccgaaggc caccaccttt
     2521 ggcgctttgt cgtacccgca cggattggaa gcatgagttt gttgccgtgt tagggtgtgg
     2581 ttggtcgggc agaacgggga aatctcacat actgcccagc gtgcgatcgc gcatcacagc
     2641 ctcccacggc tcgcaaccgt tggggcgcca accacccaga gcgtaacggg ttccgtccac
     2701 ggccagctct ctaaaaacgg cgcggcagtc cggccaacag gcggggacta aaggttggtg
     2761 cagcaggacg ggatgtgtct ctggagcgcg tgagagggag ccgccgcaag cggtctcgat
     2821 agtccagtgc atggtgatcc atcttgtgta actacgccat ttttgacgta gccaagcagg
     2881 agggctctcc tatcttgaag cgcagcggaa agataggaga gcccggcaga tgggggcgcg
     2941 cagcgacggc tttttcgcgg ctatcggccg ctgtctttag gacctagatt ttcaatcgag
     3001 agaggatctt ggcgaggggg gtaactgcgc ccgtccgtcc agcaggggct cgtcccctgt
     3061 gggcggcagc agttatcccc ggagcggggg ttggtgtttt gtcatgaggt gtcggggctc
     3121 aacgactgct cagatcgatc tcgatacgcc gaaagccaat gccattggcg gtgttggcgg
     3181 cggcatcgat gctcttgaac acccgccagc ccccgcgttg tcgttccagg acaatggtct
     3241 cgctctgttt gccgaacttc accagatgca gatggtagcc agcccccatc ggggtggggg
     3301 cgatcagggc cttggcaaac ccaccttggt caaacgtcca cttcgcttgc agttcttcca
     3361 tatcaaaacg cgcctttgat taatcaaatt tacaaaatga ttctagcaca gcgccgtctt
     3421 tataccagcg gtggcttcgg cggttcacct ggccgttcca gtagcgccca aaggaggcag
     3481 agtgcgtacc aatgatcctg tcgtgtccga tctgccagct gtgactggcg agcccaataa
     3541 cggtggatgt gtgcccgccc tatctggggc ggttggcgca cccccggctc gtattgacga
     3601 atgtcgagca ggatggcgat cagccgtttg accatggcgc ggcggctggt tttgccgccg
     3661 tgtcgcaggt aggtatcgac ccgttccctt acccattgct ccatgtgtcc tccttatccc
     3721 aggtacgcgt tggtcacgtc gatccgcccg tgccccagtt cggcggccac ctgctcacgg
     3781 gcctgcaaat ccagctcccg cgccgccgcg acctcgatcc ccaactgggc ggctaaaaac
     3841 cgatgatggt cggcaccgtg accgatcccg gccgcgacgg gcgcgggggc acccaccagg
     3901 gtttcgtacc gtccctgggc gtaggcgtgt cgttcgccgt gcgaccggat gcccgcgctg
     3961 cgcagctcgc tataggcagc cgtcctaaag tccttgtagg acattgaggg cgggatcaac
     4021 gagcggccct cctgttgggc ggcggcctgg gccagtgcgt ggtgctgggc gggtgattgg
     4081 cagggaacct gccgcacgag cccgcccttg gtgccgtcct cgatgcggat ctggccgtgc
     4141 cgttcggcct gggcaagcgc ccgttgggcg tcgagtttgg ccgcctcctc gaaccgcaat
     4201 cccaacgaac gttggaggct cagcagggct cccacccgct cggagacggc ggccacggcg
     4261 gtgtcgtgct gggacaccgg cacggcatga tcggtggtag cgatcccgct acgggtcggc
     4321 agccccgcct cgcgcacggg gtcgagccgc acggcccggt cgcctcgggc tatctccatg
     4381 acccggttaa cggcggagag cgcattttgg gcggtggcgg ggctgatctc cccctgctcc
     4441 agccgcgcga tcaggtgggc ggcataaccg cgcagggtgg ccgtctcgat gtgccgcatg
     4501 tccctgatcc ccgcctcctc acgcgcccaa ctggcgaact ggccccagcg atcggccatc
     4561 gtggcgatcg aactgtggct ctgcattccc tcgcgcaggg cgctgcgccc ggcatagccc
     4621 atatcccggc tgccgaggcc aaaatttcgt gaatcggggt ttgcccgatc acatctcgcc
     4681 atatcaaatc tccatattga ttgattgaaa ttacgttttg atgccccatc ccctgttcct
     4741 ggtggtgagt gttgtgcacc tgttttcgac tgtgcgtgtc gtggggggct tttttttcta
     4801 catctcctta cgcggtgagc gtgattgttc cgcagagcgg agggggctgc tatggcaggg
     4861 ggctcctgca agcagggcgc gggtcgagat cgactgcgcc gagcgtccgg ctggcctgtt
     4921 ttcgtgcgtt ttcgtgccag tgagatctgg cggcatggcc cgagggctaa gggatagcgc
     4981 tgggttggcg ctggccgtct ctgtcaaaca gagacggcag gggggggggg ctgggtatca
     5041 tcgcatcgca tctcatcggc tacccggtgg gaggcagtgg ccgcaaggct ccgccggagg
     5101 cttattcgtg cgtggcgtga tccttagagc aaggaatacc tgaaaaggtg ttggtctata
     5161 aagtaagaaa tgcctacaag gtgctagtct ataaagtaag aaatgcctac aaggtgctag
     5221 tctataaagt aagaaatgcc tgcaaggtgc tagtctataa agtaagaaat gcctgcaagg
     5281 gttactgagt cgttaaacgc ataaatgcgc agatgcgtgt tgcagtcgca taacactgta
     5341 ttgcaaggtc tccatcttta gatttcgacc gtccacatcc acccgtgagt ttcagtgcgc
     5401 ccgagattat ccagttgagc tcgactggcg agaaatattc agttattgca ttttgtgcaa
     5461 taaaagaagg gatttctcag ttggggaaat cagaaaaatc aattggaata ggaat
//
