LOCUS       NZ_CP091054             3482 bp    DNA     circular CON 24-MAY-2024
DEFINITION  Klebsiella pneumoniae strain AHSWKP25 plasmid pSW25H02, complete
            sequence.
ACCESSION   NZ_CP091054
VERSION     NZ_CP091054.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24907213
            Assembly: GCF_022592735.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Hao,j.
  TITLE     klebsiella pneumoniae AHSWKP25, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3482)
  AUTHORS   Hao,j.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2022) Department of Laboratory Medicine, the
            Affiliated Hospital of Southwest Medical University, 25 Taiping
            street, Luzhou 646000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: canu v. 1.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 300.0x
            Sequencing Technology             :: nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_022592735.1-RS_2024_05_24
            Annotation Date                   :: 05/24/2024 05:03:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,808
            CDSs (total)                      :: 5,687
            Genes (coding)                    :: 5,529
            CDSs (with protein)               :: 5,529
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 158
            CDSs (without protein)            :: 158
            Pseudo Genes (ambiguous residues) :: 0 of 158
            Pseudo Genes (frameshifted)       :: 59 of 158
            Pseudo Genes (incomplete)         :: 107 of 158
            Pseudo Genes (internal stop)      :: 30 of 158
            Pseudo Genes (multiple problems)  :: 29 of 158
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP091054.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AHSWKP25"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pSW25H02"
                     /geo_loc_name="China:Luzhou"
                     /collection_date="2021-07-25"
     gene            13..444
                     /locus_tag="L1P15_RS28940"
                     /old_locus_tag="L1P15_28940"
     CDS             13..444
                     /locus_tag="L1P15_RS28940"
                     /old_locus_tag="L1P15_28940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_241556120.1"
                     /translation="MGDKNGTQSSIVTYAQYTVDFSDSFSTFYASLAEMPTRLNILDCI
                     DEFIDHFEKNGLWGWKGKIAPSSRLPVNIPEPKRSDLIAHAEANKLWHAHIGDPSFRDT
                     GHGYSVSDGVLHFQKLSSYSIKLLEVGYHRPMELPVDVD"
                     /name="hypothetical protein"
     gene            1247..1681
                     /locus_tag="L1P15_RS28945"
                     /old_locus_tag="L1P15_28945"
     CDS             1247..1681
                     /locus_tag="L1P15_RS28945"
                     /old_locus_tag="L1P15_28945"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_125183090.1"
                     /translation="MSRLYRAALPEDYVHNPETGLWELSFDQRPVAGTRAASPEEGAAQ
                     YNAAREKFKSAVSAVRQRPEPVFSFTEMTEWVVEHGTPEQCQAVRLMFDARDKNEFDIA
                     VREGLKVLPRHLDFAYFFGRFSDRMRVSVPLRERLSLRLS"
                     /name="hypothetical protein"
     gene            complement(2778..3206)
                     /locus_tag="L1P15_RS28950"
                     /old_locus_tag="L1P15_28950"
     CDS             complement(2778..3206)
                     /locus_tag="L1P15_RS28950"
                     /old_locus_tag="L1P15_28950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000222531.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_025760401.1"
                     /translation="MTYSIDKKWKAGGLSLGWTAVPTVLFFIQNEKKLTSVAFNTLLNL
                     IVHWWSLQEWPHPSMESLAIRMGVSVRTVQRAINDLEKANLLDKKPTSKSDSRYGGRNI
                     YDLTKLVDYLDTMGPSVAEQVKKPRHKKPIYTVRKTTI"
                     /name="helix-turn-helix domain-containing protein"
     Typing          735..831
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.755"
                     /coverage="89.0"
                     /evalue="3.35e-23"
ORIGIN
        1 gcagagaagg gaatgggcga taaaaacggc acgcaaagtt caatcgtaac atatgcgcaa
       61 tataccgtag atttttctga ttcattttca acgttttacg cttcccttgc ggagatgcct
      121 acacgcctca atatccttga ttgtatcgat gaatttatcg atcattttga aaaaaatgga
      181 ttatggggtt ggaaaggtaa aatagctccg tcaagccgcc tgcctgtaaa cattcctgaa
      241 ccgaagagaa gcgatctaat cgctcatgca gaagctaata agctttggca tgctcatatc
      301 ggcgatccct ctttcagaga tacaggacat ggttactcag tttctgatgg cgttttgcat
      361 tttcaaaagc tgtcgtccta cagtatcaaa ctacttgagg taggttacca tcgcccaatg
      421 gagctgccgg ttgatgttga ttaacatggt cttcctgata actaattacc cttgacggtt
      481 tccggcgaca gtagtagttt cccagaaaag aaaaaaccgc cctgcaaggc ggttttttcg
      541 aaggttcaga aagttgggga actaactgaa ccgcggtgac tggctttaac ggagcgcagt
      601 aacctaatct gtccttccag tgtagccgta gtctggcacc cacttcaaga actcttgtta
      661 agttagctta acatctcgct ccgtaaataa gtcaccagtg gctaccgcca gtggcgattc
      721 gtcgtgtctg tcagggttgg aatcaagaga acagttatct gataaaggcg cggtagtcgg
      781 gttgaacggg gagttcgtgc atacagccca gcttggagcg aaccacctac aaggaaccca
      841 gttgcacggg taggaatgag aaaacgccac cttacggcgg tctgcaacgg gtaaacctca
      901 cggtgggaac aggagagcgc acgagggagc gacccatcgg aaacggtggg gatctttaag
      961 tcctgtcggg tttcgcccct tctgatttga gcaccggaaa tcgcctgatt tctgtgaagc
     1021 tcgtcaggag ggcgaagcct atggaaaacc ggggaacccg gaggcctggc tcgggggggg
     1081 aaaggggggt gtgccgttga tgttagccag agaagcgatc atctcttttc ccgttagctg
     1141 gtaacgctcg ccgcagcgtt taactagcga agtctgttaa accgaggaag cggaatatca
     1201 ctgatgctaa ggttttcgct tacacactga tgttgaggag tttcccttgt cccgtctcta
     1261 ccgtgctgca cttcctgaag attacgtcca taaccctgaa acaggtcttt gggaactttc
     1321 attcgatcag cgccccgtag caggaacgcg cgcagcttct cctgaagaag gcgctgctca
     1381 gtacaatgct gcccgcgaaa agtttaagtc ggctgtgtct gccgtccgtc agcgtccgga
     1441 accggtattt tcttttaccg aaatgacgga gtgggttgtg gaacatggca cgccggagca
     1501 atgtcaggcc gtccgtctta tgtttgatgc acgtgataaa aatgagtttg atattgcggt
     1561 gcgtgaaggt ctgaaagtgc tgccccggca tctcgatttt gcctacttct ttggtcgctt
     1621 ttccgatcgg atgcgtgtgt ctgttccgct gcgggaacga ctcagtctgc gtctgtcctg
     1681 acgtttactc agcgtaaact ctgcgttctc tgcttcctgt tttactccct attttgaccc
     1741 ctatttttat ctattgtgat gcatagggag caaaatagag gtcaaaatag gggggctggc
     1801 gcattgcatg cgccagaaag ggacatgatt ttctgaacga aaatcacgcc ccaggggttg
     1861 cgccgtgcgg cttcaccctc tctgacttct ccgcggctgg acgccactcc gtcgccagat
     1921 tcacccggcc ccgtccgacg tctccgacgc ctgaccaccc ccttaagacg cttactcgtg
     1981 taactcgtaa gctttaagag ggtggtcagg cgcctgcggc accgacgggg gggcgtagcc
     2041 cccgctgcgc aaatcgtccg tgggcggact cggaacgctg gggcgttccg ttgcttgcgg
     2101 ctcccccgaa agcacgatcc cctggacggg tatcgcaaag ccttaacccg cacccgtatg
     2161 ttcttccggc tctctttttt tgatgcgatg caggataggg ctgacgccgc aaagtgacgt
     2221 catctgacgt tctcttgttg agttatcagg acaggaaatg ttttgtggcc accgccactg
     2281 cgccgacacc acaaaacagc gggacaagat gtgtctttgg agtaccgccg gcacaccaaa
     2341 tcctcctggt caggccccgc ccgacaccct gaaaaatttc gacacgtcga aatttctgcg
     2401 ttctggttat ccacgttaaa tcgcccccct tacgaaatct ctgccgcgcc tggcggcttg
     2461 gccaacgcct cacggccgca cagtaaactg cgcccccgtt caccgttatc ggtggggttc
     2521 agcgagcctt ttgacccgtt cgcaggattt tagcggctaa aatcgcagtc atgcacctgc
     2581 gtgcatagcc atgcagtcgc gccaaaatcg tcaggggcgt ttttcagggt tatgggcggg
     2641 gaaaggtgcc ggaaatccgc aggaggccgc agaaacgcgc tgagggcgtc tcagggggtg
     2701 cggccaagag gtgttatggt aaatcagagt aattggcagg ctcgcttaac catgaaaagt
     2761 tgaactcggc ggaaatttca aattgtagtt tttcttacgg tatatatggg ttttttatgg
     2821 cgtggttttt ttacctgttc tgctactgat ggacccattg tgtctaggta gtcaacaagc
     2881 tttgttaggt cataaatgtt acgacctcca tatcggctgt cactttttga tgttggtttc
     2941 ttgtccaaga gattggcttt ttccagatca ttgatagctc tctgaactgt ccttacagaa
     3001 acgcccattc gtattgctag gctctccatc gacgggtgcg gccattcttg tagactccac
     3061 caatgaacta tgaggttaag cagagtgttg aaggccacag aagttagttt tttttcgttt
     3121 tgtataaaaa acaacacggt aggcactgct gtccagccaa gagacaaacc gccagctttc
     3181 cattttttat caatggagta agtcattgat taccttatat aaaaaattat ttggtgtata
     3241 tattatatga ttattcatat gaatagggtg acactagcgc cattattgtg caaccacaaa
     3301 aagctaacct gaagatagaa aaaaaatttt tctgcctcga ataaatacgg agttaacgat
     3361 atgaaaaccg aacaacgtca tgatcttttt gaagatactg aggtatttgg cgtatccttg
     3421 tctctgttga tttccagagc gaatgagaag tctgttacaa tgccctctgg tctgactagg
     3481 ga
//
