LOCUS       NZ_CP090939             1934 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Klebsiella pneumoniae strain ONE259 plasmid p1194_11_8, complete
            sequence.
ACCESSION   NZ_CP090939
VERSION     NZ_CP090939.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN17023568
            Assembly: GCF_021496095.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1934)
  AUTHORS   Garcia,D., Moura,Q., Fernandes,M., Esposito,F., Holt,K.E. and
            Lincopan,N.
  TITLE     Draft genome of KPC-2-producing Klebsiella pneumoniae recovered from
            a human medical device-related infection sample in Brazil
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1934)
  AUTHORS   Garcia,D., Moura,Q., Fernandes,M., Esposito,F., Holt,K.E. and
            Lincopan,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-JAN-2022) Microbiology, University of Sao Paulo, Lineu
            Prestes Avenue, Sao Paulo, Sao Paulo 05508-900, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Uniciclyer v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 144.0x
            Sequencing Technology :: Illumina NextSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 12:22:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,712
            CDSs (total)                      :: 5,590
            Genes (coding)                    :: 5,448
            CDSs (with protein)               :: 5,448
            Genes (RNA)                       :: 122
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 142
            CDSs (without protein)            :: 142
            Pseudo Genes (ambiguous residues) :: 0 of 142
            Pseudo Genes (frameshifted)       :: 57 of 142
            Pseudo Genes (incomplete)         :: 89 of 142
            Pseudo Genes (internal stop)      :: 17 of 142
            Pseudo Genes (multiple problems)  :: 20 of 142
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090939.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1934
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ONE259"
                     /isolation_source="catheter"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p1194_11_8"
                     /geo_loc_name="Brazil: Sao Paulo"
                     /lat_lon="23.560035 S 46.647337 W"
                     /collection_date="2011"
                     /collected_by="Doroti Garcia"
     gene            complement(772..1758)
                     /locus_tag="I7858_RS28490"
                     /old_locus_tag="I7858_28490"
     CDS             complement(772..1758)
                     /locus_tag="I7858_RS28490"
                     /old_locus_tag="I7858_28490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     Typing          855..1046
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.601"
                     /coverage="100.0"
                     /evalue="1.39e-59"
ORIGIN
        1 acaacgcaaa taagccccga agccttggta cgcaaggctt gatgccattt tttatcgcca
       61 gagttatccc ttaagtataa atacaaggat cgcgcgcgga tcgaaccagc cattcaacgc
      121 ccacccgcca ccaaaaactg ccacaacgcc aggagcgaaa cagcaacgct caacgcacta
      181 tcaacatgat taagaacctc aaaaaacata acaacctcac tcgaatggaa ttgggtaaat
      241 ctatttagtc tgtgatttgc gaacccatac tttttcgcat cacgacagaa ccaactccat
      301 tcgttctggt tgtatccggt accagacaat taaaaaccgt cttccaggtg gttggcctca
      361 cttcgtgaat ccaaccacct cagccaattt ttcaatcagc aatgtcgtca atcactaaat
      421 cggaacccac tggcaagcca gcgggacccc acgatttaga gtttgacgat ttcggaaaca
      481 gcgagcgctg gcagatttta atctgactgc gtgaggtgtt ggcagggtgt cggggcgcag
      541 ccctgacgaa tcgtttttgg caccgacatc gtgatggcgg tgtaccaaaa acacatcttg
      601 tcccaactga gttcggaaac cgaactcagt aattgagtga cgtcactttg cggcgttagc
      661 cctatcctgc atcggagtag aaccaatagg acaagatgtg tttttggagt accgccgaca
      721 agcggcgtcc tctcaaaaac gtcgtggtca gggctgcgcc ccgacaccct gtcagtctga
      781 ttcagcttta tcttttgacg gtgagcgacg gtactttttg gattcggttt tccactcaaa
      841 agcaatgcgt gaaccatcat catcgccttc gggaatatca tccccgatta ccatatcggc
      901 atcagtttcc tgatcgagtt tcagtatgtc tttgagtgcg ccaccggtag ccacaaatcg
      961 gcgcttatgt gtctgcttag tcaattcgag gaaccattca ggatcagcaa ccatgtcagc
     1021 cggcttcgtg gaatatttca gggtttcagc cactgcgccc cgtacaagtt ccgcagttgc
     1081 agaagccaat gattctccgt ccttaggctt gcggggtttt actgctcgaa catcaacatt
     1141 cggatcgtaa ttcacacgca aacactctcg ccaaagctct acccagcggt catgtttaac
     1201 gtaatctcgc gtgaacattg agggaggaac catcatcaga gtgtgaaagt gcgggtgcgc
     1261 actaccgtca cttccacgtg taacttccgt ggtgcggatc cagccctgaa caggtcgaaa
     1321 ctctttgcga tccttaagtc gctggaaggc catgttcatt cggttaagtg tctcacccaa
     1381 ttccccgatc gcgcagtttc gcactgtgag ggtcaggaac atccagcgtg catctggata
     1441 atccgcaaca atacgcggca gggactgata aaaacgggct tgccacatca gggatcgcct
     1501 ccactggcag acaggacagt gccggacacg acagaaatgc gcctcacgta gcctaaggcg
     1561 agtttctcca gtttctttga gggtagacca accaaacctc agtaaaccgc cacaggaagc
     1621 catacgcgcc ccgtagcgct catattcggc tgcgagaagg taaatcccac ctacgtcgtc
     1681 agaaacgctt ttgtgagcgt cccagggcgc gtctgagggg gagtaatccg tgaggttctg
     1741 gagtttaggg ttttgcatgc acaccgtccc atgctgggcg atggctcatt tgacgtgtta
     1801 tcattgccgt atcacctgtt ggttgtcgct tcgaatcgaa tttctgcagg tggtcacacc
     1861 cccgaacgat ggccgtcgtt gcgggggtcg cttttaaggc gaccactccc aacagaatac
     1921 ttccaaaacc ttct
//
