LOCUS       NZ_CP090578             2216 bp    DNA     circular CON 27-JAN-2024
DEFINITION  Staphylococcus epidermidis strain 11H plasmid pSE11H-3, complete
            sequence.
ACCESSION   NZ_CP090578
VERSION     NZ_CP090578.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN18740291
            Assembly: GCF_021484865.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Morand,S.C.
  TITLE     Staphylococcus epidermidis strain:11H complete genome sequence
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Morand,S.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2022) Advanced Research, L'Oreal, 1 Avenue Eugene
            Schueller, Aulnay-Sous-Bois 93600, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: JAN-2022
            Assembly Method :: MaSuRCA v. 3.3.0; Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1389.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/27/2024 17:01:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,320
            CDSs (total)                      :: 2,236
            Genes (coding)                    :: 2,185
            CDSs (with protein)               :: 2,185
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 51
            CDSs (without protein)            :: 51
            Pseudo Genes (ambiguous residues) :: 0 of 51
            Pseudo Genes (frameshifted)       :: 29 of 51
            Pseudo Genes (incomplete)         :: 32 of 51
            Pseudo Genes (internal stop)      :: 18 of 51
            Pseudo Genes (multiple problems)  :: 22 of 51
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090578.1.
            Bacteria and source DNA available from L'Oreal.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="11H"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="pSE11H-3"
                     /geo_loc_name="France"
                     /collection_date="2013-04"
     gene            1021..1944
                     /locus_tag="KB225_RS11590"
                     /old_locus_tag="KB225_11590"
     CDS             1021..1944
                     /locus_tag="KB225_RS11590"
                     /old_locus_tag="KB225_11590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_031864528.1"
                     /translation="MEKYTEKKRRNQVFQKFIERHVKEGQMDLIRECNTFLSFVADKTL
                     EKQKLHKSNLCKNRFCPVCAWRKARKDALGLSLMMQYIKQKEDKQFIFLTLTTPNVTAE
                     HLESEIKAYNHSFQKMFKRKKVISATKGYVRKLEITYNKERDDYNPHFHVLIAVNKSYF
                     TDKRYYISQKEWLELWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKDAKKKLKNGDLDYLKEIDPTEYVYQIFYMWNKNEYLA
                     SEIFDLTDEEKQKINHQMINEIEEEK"
                     /name="protein rep"
     Typing          1022..1940
                     /name="rep_cluster_1281"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.985"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 actcccgaac ggctacacaa aagctaccga atagctacac aaaatcaaaa atggatacca
       61 tatggatacc taaaattaaa aatggatacc aaatagctac attattaggt agccatttgg
      121 gagctaaaag ggagccaaat ggtagccaaa atcaaaatgc actgctgcct tttttgaata
      181 atattaaacg ggttttagct tttttctaag aagaataatt gagattaaaa atatattttt
      241 ctttctgaaa gtgttgagaa atgaatttta aaatgattca tagcctctct tttgaacgaa
      301 agaaattttt gtttgttttt atattcgaaa tgattaaatg tcgtagaaag ggcttaaaat
      361 gcaaaataaa agaaccactc aaaaatgagt ggtctggaga attgctataa aatgctgtgc
      421 gattgaaaaa gagcactata ttaagcatac cacatgcatt tatgccgaga aaatttttgg
      481 ttggaatgag ctatgtgtta gctaactatg ttagcgagtt ggttggtggt ttgttgggat
      541 taatcccaac gaagtaccaa ctcaacaaca cattatgctc cgttggttcc aaccaaaaag
      601 caattggaat aaagcattaa aaatagccac tcaacaatta agtggctatg gagggtaaaa
      661 gaactttttc atattaaaag atttaatgat atgtggggat gatgttacat tttcacttta
      721 tcatttattt attaatagtg catttaaaag tatttaacga tgagattttt tggctttttt
      781 gaaacgagtg aaacgagttt cttcttgtct tgatactata ggtaactatt cccgtatggt
      841 tacctatctc tagattagtt gatatgactg tctttgaacg caaaaaaagt tgctttttca
      901 tacctagtat agtagagttt atggtgacca aaccaaaact ttacatgaaa ggagaaaaag
      961 caactttttt gttataaaaa ctttgtatac aacttagttg tttttacagt gatttaatat
     1021 atggaaaagt atactgagaa aaaacggaga aatcaagtat ttcagaaatt tattgaacgg
     1081 catgtcaaag aaggacaaat ggatttgata agggagtgca atacattctt gagttttgtg
     1141 gcagataaaa cattagagaa acagaaattg cataaatcta atttatgtaa aaatcgattt
     1201 tgtcctgtat gtgcatggcg aaaagcgaga aaagatgcgt taggtttatc attgatgatg
     1261 caatatatta agcaaaaaga agataaacaa ttcatctttt taacacttac cacgccaaat
     1321 gttacagctg agcatttaga aagtgaaatt aaagcttata atcactcttt tcaaaagatg
     1381 tttaagcgta aaaaagtaat ttctgctacg aaaggttatg taagaaaatt agaaattact
     1441 tacaataaag aacgtgatga ctataacccg cattttcatg ttttaattgc agtaaataag
     1501 tcatatttta cagataaaag atattatatt agccaaaaag aatggcttga attatggcgt
     1561 gacgtaacgg gaatttcaga aattacacaa gttcaagttc aaaaaataag acaaaataac
     1621 aataaagagt tatatgaaat ggctaagtat tctggtaaag atagtgatta tttaataaat
     1681 caaaaagtat ttgatgcatt ctataaatct cttaaaggta aacaggtatt agtttattca
     1741 ggattattta aagatgctaa aaagaaatta aaaaatggag atttagatta cttaaaagaa
     1801 attgatccaa ccgaatacgt gtatcaaatt ttttacatgt ggaataaaaa tgaatattta
     1861 gcgagtgaaa tttttgattt aacagacgaa gaaaaacaaa aaataaatca tcaaatgata
     1921 aatgaaattg aagaagaaaa ataaaaaaca aaacgctact cgaaaaaaag agtgagcgtt
     1981 ttttgttttg ttagaaaaaa ttaaagatgt ttttctgaaa aaggtttgag attttgaaat
     2041 gaaaaatatg agggtataca ggtgtaatat tgcaactatt gctattaaaa gagcataaga
     2101 ggaatcctac acagaaatgt ctccttatgt agccattcgg tagccatttc tgtgcaaaat
     2161 attgatttga cagtgtcaaa tgggattcct atttatgcga taaaaattgt tatatg
//
