LOCUS       NZ_CP090543             3136 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Salmonella enterica strain 2010112-SE plasmid p2, complete sequence.
ACCESSION   NZ_CP090543
VERSION     NZ_CP090543.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24619907
            Assembly: GCF_021474345.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3136)
  AUTHORS   Bai,L., Li,R., Du,P. and Zhang,P.
  TITLE     Emergence and genomic epidemiology insights on Salmonella
            4,[5],12:i:- from clinical patients in China, 2008 to 2017
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3136)
  AUTHORS   Bai,L., Li,R., Du,P. and Zhang,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JAN-2022) College of Veterinary Medicine (Institute of
            Comparative Medicine), Yangzhou University, Wenhui Road, Yangzhou,
            Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Illumina NovaSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 11:18:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,014
            CDSs (total)                      :: 4,888
            Genes (coding)                    :: 4,773
            CDSs (with protein)               :: 4,773
            Genes (RNA)                       :: 126
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 32 of 115
            Pseudo Genes (incomplete)         :: 93 of 115
            Pseudo Genes (internal stop)      :: 19 of 115
            Pseudo Genes (multiple problems)  :: 27 of 115
            Pseudo Genes (short protein)      :: 1 of 115
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090543.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3136
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="2010112-SE"
                     /isolation_source="patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:28901"
                     /plasmid="p2"
                     /geo_loc_name="China: Henan"
                     /collection_date="2010"
                     /collected_by="Pei Zhang"
     gene            join(3098..3136,1..888)
                     /locus_tag="L0F62_RS24980"
                     /old_locus_tag="L0F62_24985"
     CDS             join(3098..3136,1..888)
                     /locus_tag="L0F62_RS24980"
                     /old_locus_tag="L0F62_24985"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001314449.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGHDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            891..1424
                     /locus_tag="L0F62_RS24985"
                     /old_locus_tag="L0F62_24990"
     CDS             891..1424
                     /locus_tag="L0F62_RS24985"
                     /old_locus_tag="L0F62_24990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_142595565.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGWVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPATGKSRKN"
                     /name="hypothetical protein"
     gene            complement(2527..2922)
                     /locus_tag="L0F62_RS24990"
                     /old_locus_tag="L0F62_24995"
     CDS             complement(2527..2922)
                     /locus_tag="L0F62_RS24990"
                     /old_locus_tag="L0F62_24995"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222910.1"
                     /translation="MRISNIDWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNELQAQENARKQANQKRMEGKTQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELRYPKDNILQKLKAIRLDLETSPDHH"
                     /name="hypothetical protein"
     Typing          2..885
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.305"
                     /coverage="96.0"
                     /evalue="0.0"
ORIGIN
        1 gggcaggctg caaaccacgc cgattacatc gagcgcaaag agaaataccg cgaccgtcag
       61 gatttggaat attccgcaca cggaaacatg ccggaatggg cgcgagataa tccctcacat
      121 ttctggcagg cggctgacca gtttgaacgt gcgaacggtt cgacctatcg ggaacttgaa
      181 attgcattac cccgtgaact gacagcggaa cagcgccttg aactggtgca ggattttgta
      241 cgtcaggaag ctggcgaacg gcacgcctgg agttttgcca ttcacaatcc gaaagcgagc
      301 attgacggcg gcgaacagcc tcatgcgcat atcatgatga gccagcgtgt gaatgatggc
      361 attgaacgta caccggaaca gtatttccgg cgctataacg ccaggtatcc cgagcgggga
      421 ggtgcgaaaa aggattccgg aagcctgact ctcactcagc aaaaagagca gttgcgggaa
      481 ttgcgaaaac gctgggaggt gaagcacaac gaacatatga gaaagcatgg ctttgaaagg
      541 ggcttcattg actgccggac gctgaaagaa cagggcattg aacgacgtcc cgaagtgcat
      601 ctgggttttg aagctgccgg acggcttgat gatgcccagc gtcatgacat catgcaaaaa
      661 cggtctgaac cggactattc ccgccatctt gaacaggcgc gaacggtcgg gcatgacatc
      721 agggaatggc tggacactcc ggttaagcaa catgaactgg tcagaaggct gcaacatgat
      781 gttgcgcggg agcatggctt tgacatgaga gacagagtga gcagacagaa ccgaactgaa
      841 cctgaacggg ttaaatcacc gtcacgtgga ttttctatgg gattctgaac atggccagca
      901 cagaagaaaa attactcacg ctcctgttat cggtggagca tctgcaacat accgcaatgg
      961 agcaacagaa agctgttgct gattctctgg ctgtggcaag ggaaacactt cgcggatatc
     1021 gggatatttc tgacggtgtg gcaaaacagg tcagggatga agtcagaaac gaggtgcaga
     1081 agctggatgt tgcagggctg ataggtgagc gcatcagcca ggattttcag cggctggaag
     1141 agtcagtcgc aaacatgaag gcaaacgcgg atgccctgaa cagggatatt gcgacaattc
     1201 acagcaatat cgtgcaggaa tacaacaccc ttaaagggta tagctggaaa tggctgggtt
     1261 gggtgtcagt ggcttttctg gttatgttct gtgtgcttgg atggggaatg aaaacaatgc
     1321 tcgacaggaa ctacaacgcc acagcggcgg tgtatcagaa agttgtgaca ctggaagata
     1381 aactggcgga gaaaccagca acagggaaga gccggaaaaa ctgacgcgct tcgcttgtcc
     1441 aacgcctcac gggacgcgaa aaaattccgc gtcccgttca ccgttttctg atgagaaagt
     1501 ttgccgtttt gacccgttcg gtgctcagat ttggcgaaat tgattccgaa tcacttttgt
     1561 gaatagttat gcaagcccct ggaaacgttt ctgacgcgtt ttttgaggta ggggtggggg
     1621 aaagcatggt tttttgatgt tttgagcgta aaagcgtgaa aaatcgcgtt attgtgcttg
     1681 cgatctttcg tcagggagcg tagaacgaaa aaagcccgcc gttaggcgag cttcttcggg
     1741 ttcattgagg ttttcgacct cctcaatgtt cctgtggagt ctgttgcggt gacaacggaa
     1801 accagttcat tcagtttgca tgaaccttct gtattcttca agcattaccg accgcacagc
     1861 ctccccagaa tcccgaaaaa atcctgtttt tgcagatgat tgcgtgtttg caaagaccgt
     1921 ttgcggttgg gggagctgtg acgacggcaa ccgcacgcgt gagagttccg ctaccggcgc
     1981 agagagtttc atcgacagcg gacacctgat gagttgccac aaaaaccgta tgtagcgcgg
     2041 ctagattggt tgagttagac cttggcggca gttcccggta tgtggtggcg tgacgggtga
     2101 gatggtgcgg cgaagacgca tacgtcacgc aggcgcgggt tcttccaccg acgcgccccg
     2161 tgatcgatgg ccttggctcc gtccggcata tcgagagcgg caaactaccc gtcccttcac
     2221 tgggaggggt gagttgttgc cgttccctcc gaccttccac catccagcat atcgcacgat
     2281 cccatgagca ccgcaacaac tgataactcc agagcaaaaa aaaaaaagga tctgcatcat
     2341 gtgagagtga tcccaccgct cgccgcagcc ccagcgaccg aacgtagtga gcgagtgggc
     2401 gaggaagcgg aagtgaaccg gaaaccacat tgagcacgta cgcacctatg ccagatccgc
     2461 gcgtagcgcg tcgcgaaatc gaaaacattg aacaccggca ggcaaacgca ccaccacgca
     2521 gcggaattaa tgatgatctg ggcttgtttc aagatcgagc ctgattgcct taagtttctg
     2581 taatatattg tcttttgggt atctcagttc gcctgttttt gtgtccacta gtccggcctc
     2641 gatcagtaac cccgccgcaa gaaacaggcg gtgattgcgt tcccgtcgtt gtgttttccc
     2701 ctccatccgt ttttggttgg cctgtttgcg tgcgttctcc tgtgcctgta gctcgttttt
     2761 ttctgcggtt gccaggacgt ggagtagttt gcgctcctgt tctgttagtc cggcttcgtt
     2821 atcgagcagg tcaatgatct gcctctgtcg tgcggtctgt tctccgagct tcctgataaa
     2881 gccgattcgt ttcttcaacc agtcgatgtt gctgatgcgc atgtttggga tgctccctgg
     2941 tgttttttgc ggtgtgttgg ggttgtgcag tatatcgctt gcggtcggtg ggtgcagggg
     3001 gtatcttccg tgctaattcg taaaattaga aggaagcgca cttatatgtt tctctccttc
     3061 gtcgagaaac agtgcgctcc tgcggagggc tgaaaccgtg gcaacctatc acctcagcgt
     3121 taaatttggt ggcaag
//
