LOCUS       NZ_CP090396             4052 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Klebsiella pneumoniae strain YZH2429 plasmid pYUYZH2429-3, complete
            sequence.
ACCESSION   NZ_CP090396
VERSION     NZ_CP090396.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24499277
            Assembly: GCF_021432125.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of Klebsiella pneumoniae YZH2429
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 04:56:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,656
            CDSs (total)                      :: 5,532
            Genes (coding)                    :: 5,371
            CDSs (with protein)               :: 5,371
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 61 of 161
            Pseudo Genes (incomplete)         :: 105 of 161
            Pseudo Genes (internal stop)      :: 24 of 161
            Pseudo Genes (multiple problems)  :: 26 of 161
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090396.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZH2429"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pYUYZH2429-3"
                     /geo_loc_name="China: Yangzhou"
                     /lat_lon="32.15 N 119.01 E"
                     /collection_date="2020-10-24"
                     /collected_by="Li Guiling"
     gene            complement(join(3897..4052,1..330))
                     /locus_tag="LY283_RS28175"
     CDS             complement(join(3897..4052,1..330))
                     /locus_tag="LY283_RS28175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<368..1045)
                     /locus_tag="LY283_RS28315"
                     /pseudo=""
     CDS             complement(<368..1045)
                     /locus_tag="LY283_RS28315"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1008..1349)
                     /locus_tag="LY283_RS28185"
     CDS             complement(1008..1349)
                     /locus_tag="LY283_RS28185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_085859042.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2715..3173
                     /locus_tag="LY283_RS28190"
     CDS             2715..3173
                     /locus_tag="LY283_RS28190"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(3681..3893)
                     /locus_tag="LY283_RS28195"
     CDS             complement(3681..3893)
                     /locus_tag="LY283_RS28195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          complement(1437..1616)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          1593..2079
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(3..1018)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.215"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(3566..4050)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.296"
                     /coverage="99.0"
                     /evalue="5.91e-89"
ORIGIN
        1 gatagtctgg taattcccgg tgatctgctg cccctgccac cacagaatgc tcccgctcat
       61 ggcgatcagc agtaccgaga ccagggtgat ggtcagccac gtccggccga ccatacgcag
      121 cacgctcagg cggttcgact gcatcgccgc ggtcataccc tgctcgtggg cgctgatggc
      181 gtcgctgatt ctcttcgcgc ttgcgctcag ttccgctttt acagatttct cgtgctcgct
      241 gaatgcggct ttcagcatct cgccggtact ctgctgctgc gctttcgatt gctgctccaa
      301 gtccttcgcc agcgctaaaa gactgctcat aaatggctcc cttcagtcgg atgtttcgcc
      361 ccccgtccgg gtcggcaatg ctgatactgt tttttgtagt gcggaccacc tcaaaacctg
      421 ccgctgtgag cgcacctgtg acgtcctcgc gagttttgag ctccccggat gaggctaagg
      481 ccagcaaccc acgtgtaatc gcctgagcgg cttccagctt cgtttccggc agtgcggacg
      541 gcgtaaccag taaccgccgg ttctccgggg cgtttggatc atgcagtccc agtctgccgt
      601 tcaccacggt ctgccaggca tcgatgcgcg gccggtcggc gcgatcgtaa tacggctgca
      661 ggcgtttccc ggtcagcagt tcagtgttgg ggatcaggaa attcagctcc agccgcccct
      721 tgtcggtgtg ctccacccac agaatgctgt actggtcttt atcgagcccg ggcatcagaa
      781 cccgctcaaa gctggccatg atctgctccc gctgcccggg cagcagttca gcctccgcga
      841 acgacagcac gccggaggtg tactttttcg catacggcga ggcatcgata agctcccgga
      901 cttcctccgg ttttccctgc agcacggtcg ccccctcgcg ctgccggtct tttcccagca
      961 ggtaatccac cggaccggca ccaccaccgc gcccccgggg atgaaattta acgatcatca
     1021 tccccccctt tttccagcac cgcatgccgc agccgctcca gtcccgcgtc tattgccatc
     1081 agggcggcca caatctgcac ccgatcatga ccggcaccaa cggcattcac tttccgggcg
     1141 atctggttca ggttgttacc cataccggca agctggcgca gcagcgccgg cgatattgac
     1201 ggcagtctgc aggcacgcgc cggcttctca tcgaggcagg tctgacgcat ccacgccgcc
     1261 agctgcctgc cgtcgcaccg ctcgagcagc cgccggtgtt cgtcttccgt cacccacatc
     1321 gtgagcatct tgttgcgttt gtctgccaga gtagcctcct gataacaccg ggacgggcgg
     1381 gaaatgtttc ccggtcggca cggtgttgga caagccgcag gcgcgtcagt ggcttttagc
     1441 gggtttcggg gcgcagccct gaaccagtca cgtagcgcta gcggagtgta tactggctaa
     1501 atatgttacg gcggagtggt aatgtatgaa agtgcttcat gtgggaaggg gaaaatgtgg
     1561 ctgacgggcg taagtgcaac atgctggtaa aggtgaaatg acgcctcctc gctcactcag
     1621 tcgctgcgct cctgccgtga gactgcggcg ggcgttacca gctcacagat gacgggatac
     1681 gcaagcagcg ctcaaatcag gagaagccgg gaagaggatg cggcgttgcc gtttttccat
     1741 aggctccgcc cccctgacga gtatcataaa atctgacgct caaatcagtg gtggcgaaac
     1801 ccgacaggac tataaagatc ccaggcgttt ccccctggta gctccctcgt gcgctctcct
     1861 gttcctgcca ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt gtctcattcc
     1921 acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta tgcacgatcc
     1981 ccccgttcag tccgactacc acgctctttt cggtaactat cgtcttgagt ccaacccgaa
     2041 aaggcacgac aaatcgccat tggcagtagc cactggtaaa caggatgtgc gagagatgta
     2101 ttcagagttc ttgaagtggt ggccttactg cggctacact ggaaggacag ctttggtgac
     2161 atgtctcgca caagactgtt accacggtta gtaaatctgc caggattaac taaccttcga
     2221 aaaaccacct gccagggtgg ttttttcgtt tacagagcaa aagactacgc tcagaaagag
     2281 attatctcaa gaagatcatc tctttctctt actcaagtca aagcaaaaaa acaccactcc
     2341 atcacaaact caggttatag tcggtatgca actaataaca ctgtaatttc tgtgcaaaat
     2401 cgaggttatg catatgcaaa tcaacatcaa ctgcaagagt atcccaacat ctttcgatgt
     2461 tgtctgctcg aattgtgaat ggaccggcgt ggctacatta gattatccgg aaaacgtaaa
     2521 aaccctatct gtcggaggag aaataaattt cactcataat gacgagacgc caaaatgtcc
     2581 acaatgtagc gttggatata tatatggtaa aagtggcact tataaacgta atagtgcaac
     2641 taaccatatg gacagaatcg gagattataa agagtaaata atacgcatca cagcaatcta
     2701 acgagggaaa tataatgatt gaaaccacac tacttgccgt tctcactggc gcattaagca
     2761 atcttacttc tgatgcaatc aaaggcatca tagggaagtt agcaagtaaa catcctgaag
     2821 ttgaacaaca agcctcactg cttgaaacac cattaccttt tgacgaagtt gataaattat
     2881 tttctcagat gcagggggcc attcaggctg cagcagccaa tggtgaaatt cagctagatg
     2941 gagctgaatt aaaagcattg agcggaataa aatttgatca ccaagccgga actgttttga
     3001 taaatggatc tcaagtacaa gcgtcaattt tagtcactgg tggaggtcaa catgctactg
     3061 gaaaaacgat catacaaggt gatacgacaa tgactagcca gggtacaagt ataaaaatgt
     3121 caggtggtgc tcaaatagta atgactggtg gagcccgaat cattcagaac taatatgatt
     3181 taccataaca tctcttgccc gcaccgctcc ggacatgttc gtcacaaacg gggcggcagt
     3241 caggtaaaac cggcaacaaa ccacccgata caccgccccg ttcgtgacag ataaatttta
     3301 cccggctgca tggtcatgca gccagatgca tacggtctga tttcaggcca gaatctggat
     3361 gaacgcctta aaaacaggaa aatgcttctc cagccagtcc cagatctcca gcgccatgta
     3421 caggcagttc agcaccgtct caatcacgtt aaacagtctc ataatccctc cgttgtatac
     3481 gccgtgatgt tttcatcacg accgtattta gcgggaaatt tatgagccct tcttcgtggg
     3541 gtttgtcact ggtgaagcct gtcagcccag cgtcggaccg ttatagctcc gctgacggga
     3601 acgggcttcc gccagctctt tttcgtgctg tcgctgctcg tatgcccgtt cggcggccac
     3661 cgccatttca tgccgctgca ctactggctc aaacgctgta actgcctgct caagttcgcc
     3721 acctgctgac tcaagcgcgt gacgcgctcg ttcagcgccg cgttctcccg ttgcataaga
     3781 ccagacatct tctgccattc cgcgaaggcg ctctcccact cgtccagcct ttgcgagtag
     3841 tcctgatgta gctgctctaa tgcggtcagc aactgttttt ccagttccgt catgggctat
     3901 ttcctctcca gtaccatcca gttcccttcc tccccgtaag ctcccgcttt cgggttcact
     3961 ttgacgcagg acagtttctt ctccccgcag agcgacagct gaacgccgtg gtttttctcc
     4021 gacaacatgg cctgcgtccg ctcctgcgcc cg
//
