LOCUS       NZ_CP090392             4052 bp    DNA     circular CON 03-DEC-2023
DEFINITION  Klebsiella pneumoniae strain YZH22127 plasmid pYUYZH22127-3,
            complete sequence.
ACCESSION   NZ_CP090392
VERSION     NZ_CP090392.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24499276
            Assembly: GCF_021432105.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of Klebsiella pneumoniae YZH22127
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/03/2023 05:09:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,662
            CDSs (total)                      :: 5,538
            Genes (coding)                    :: 5,376
            CDSs (with protein)               :: 5,376
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 61 of 162
            Pseudo Genes (incomplete)         :: 107 of 162
            Pseudo Genes (internal stop)      :: 24 of 162
            Pseudo Genes (multiple problems)  :: 27 of 162
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090392.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZH22127"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pYUYZH22127-3"
                     /geo_loc_name="China: Yangzhou"
                     /lat_lon="32.15 N 119.01 E"
                     /collection_date="2020-10-22"
                     /collected_by="Li Guiling"
     gene            complement(join(3813..4052,1..81))
                     /locus_tag="LZC40_RS28205"
     CDS             complement(join(3813..4052,1..81))
                     /locus_tag="LZC40_RS28205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_220700843.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARACRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1468..1926
                     /locus_tag="LZC40_RS28210"
     CDS             1468..1926
                     /locus_tag="LZC40_RS28210"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(2434..2646)
                     /locus_tag="LZC40_RS28215"
     CDS             complement(2434..2646)
                     /locus_tag="LZC40_RS28215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2650..3135)
                     /locus_tag="LZC40_RS28220"
     CDS             complement(2650..3135)
                     /locus_tag="LZC40_RS28220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<3173..3850)
                     /locus_tag="LZC40_RS28345"
                     /pseudo=""
     CDS             complement(<3173..3850)
                     /locus_tag="LZC40_RS28345"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(190..369)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          346..832
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.235"
                     /coverage="93.0"
                     /evalue="5.96e-162"
     Typing          complement(2319..3823)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 catccacgcc gccagctgcc tgccgtcgca ccgctcgagc agccgccggt gttcgtcttc
       61 cgtcacccac atcgtgagca tcttgttgcg tttgtctgcc agagtagcct cctgataaca
      121 ccgggacggg cgggaaatgt ttcccggtcg gcacggtgtt ggacaagccg caggcgcgtc
      181 agtggctttt agcgggtttc ggggcgcagc cctgaaccag tcacgtagcg ctagcggagt
      241 gtatactggc taaatatgtt acggcggagt ggtaatgtat gaaagtgctt catgtgggaa
      301 ggggaaaatg tggctgacgg gcgtaagtgc aacatgctgg taaaggtgaa atgacgcctc
      361 ctcgctcact cagtcgctgc gctcctgccg tgagactgcg gcgggcgtta ccagctcaca
      421 gatgacggga tacgcaagca gcgctcaaat caggagaagc cgggaagagg atgcggcgtt
      481 gccgtttttc cataggctcc gcccccctga cgagtatcat aaaatctgac gctcaaatca
      541 gtggtggcga aacccgacag gactataaag atcccaggcg tttccccctg gtagctccct
      601 cgtgcgctct cctgttcctg ccattcggtt taccggtgtc attccgctgt tatggccgcg
      661 tttgtctcat tccacgcctg acactcagtt ccgggtaggc agttcgctcc aagctggact
      721 gtatgcacga tccccccgtt cagtccgact accacgctct tttcggtaac tatcgtcttg
      781 agtccaaccc gaaaaggcac gacaaatcgc cattggcagt agccactggt aaacaggatg
      841 tgcgagagat gtattcagag ttcttgaagt ggtggcctta ctgcggctac actggaagga
      901 cagctttggt gacatgtctc gcacaagact gttaccacgg ttagtaaatc tgccaggatt
      961 aactaacctt cgaaaaacca cctgccaggg tggttttttc gtttacagag caaaagacta
     1021 cgctcagaaa gagattatct caagaagatc atctctttct cttactcaag tcaaagcaaa
     1081 aaaacaccac tccatcacaa actcaggtta tagtcggtat gcaactaata acactgtaat
     1141 ttctgtgcaa aatcgaggtt atgcatatgc aaatcaacat caactgcaag agtatcccaa
     1201 catctttcga tgttgtctgc tcgaattgtg aatggaccgg cgtggctaca ttagattatc
     1261 cggaaaacgt aaaaacccta tctgtcggag gagaaataaa tttcactcat aatgacgaga
     1321 cgccaaaatg tccacaatgt agcgttggat atatatatgg taaaagtggc acttataaac
     1381 gtaatagtgc aactaaccat atggacagaa tcggagatta taaagagtaa ataatacgca
     1441 tcacagcaat ctaacgaggg aaatataatg attgaaacca cactacttgc cgttctcact
     1501 ggcgcattaa gcaatcttac ttctgatgca atcaaaggca tcatagggaa gttagcaagt
     1561 aaacatcctg aagttgaaca acaagcctca ctgcttgaaa caccattacc ttttgacgaa
     1621 gttgataaat tattttctca gatgcagggg gccattcagg ctgcagcagc caatggtgaa
     1681 attcagctag atggagctga attaaaagca ttgagcggaa taaaatttga tcaccaagcc
     1741 ggaactgttt tgataaatgg atctcaagta caagcgtcaa ttttagtcac tggtggaggt
     1801 caacatgcta ctggaaaaac gatcatacaa ggtgatacga caatgactag ccagggtaca
     1861 agtataaaaa tgtcaggtgg tgctcaaata gtaatgactg gtggagcccg aatcattcag
     1921 aactaatatg atttaccata acatctcttg cccgcaccgc tccggacatg ttcgtcacaa
     1981 acggggcggc agtcaggtaa aaccggcaac aaaccacccg atacaccgcc ccgttcgtga
     2041 cagataaatt ttacccggct gcatggtcat gcagccagat gcatacggtc tgatttcagg
     2101 ccagaatctg gatgaacgcc ttaaaaacag gaaaatgctt ctccagccag tcccagatct
     2161 ccagcgccat gtacaggcag ttcagcaccg tctcaatcac gttaaacagt ctcataatcc
     2221 ctccgttgta tacgccgtga tgttttcatc acgaccgtat ttagcgggaa atttatgagc
     2281 ccttcttcgt ggggtttgtc actggtgaag cctgtcagcc cagcgtcgga ccgttatagc
     2341 tccgctgacg ggaacgggct tccgccagct ctttttcgtg ctgtcgctgc tcgtatgccc
     2401 gttcggcggc caccgccatt tcatgccgct gcactactgg ctcaaacgct gtaactgcct
     2461 gctcaagttc gccacctgct gactcaagcg cgtgacgcgc tcgttcagcg ccgcgttctc
     2521 ccgttgcata agaccagaca tcttctgcca ttccgcgaag gcgctctccc actcgtccag
     2581 cctttgcgag tagtcctgat gtagctgctc taatgcggtc agcaactgtt tttccagttc
     2641 cgtcatgggc tatttcctct ccagtaccat ccagttccct tcctccccgt aagctcccgc
     2701 tttcgggttc actttgacgc aggacagttt cttctccccg cagagcgaca gctgaacgcc
     2761 gtggtttttc tccgacaaca tggcctgcgt ccgctcctgc gcccggatag tctggtaatt
     2821 cccggtgatc tgctgcccct gccaccacag aatgctcccg ctcatggcga tcagcagtac
     2881 cgagaccagg gtgatggtca gccacgtccg gccgaccata cgcagcacgc tcaggcggtt
     2941 cgactgcatc gccgcggtca taccctgctc gtgggcgctg atggcgtcgc tgattctctt
     3001 cgcgcttgcg ctcagttccg cttttacaga tttctcgtgc tcgctgaatg cggctttcag
     3061 catctcgccg gtactctgct gctgcgcttt cgattgctgc tccaagtcct tcgccagcgc
     3121 taaaagactg ctcataaatg gctcccttca gtcggatgtt tcgccccccg tccgggtcgg
     3181 caatgctgat actgtttttt gtagtgcgga ccacctcaaa acctgccgct gtgagcgcac
     3241 ctgtgacgtc ctcgcgagtt ttgagctccc cggatgaggc taaggccagc aacccacgtg
     3301 taatcgcctg agcggcttcc agcttcgttt ccggcagtgc ggacggcgta accagtaacc
     3361 gccggttctc cggggcgttt ggatcatgca gtcccagtct gccgttcacc acggtctgcc
     3421 aggcatcgat gcgcggccgg tcggcgcgat cgtaatacgg ctgcaggcgt ttcccggtca
     3481 gcagttcagt gttggggatc aggaaattca gctccagccg ccccttgtcg gtgtgctcca
     3541 cccacagaat gctgtactgg tctttatcga gcccgggcat cagaacccgc tcaaagctgg
     3601 ccatgatctg ctcccgctgc ccgggcagca gttcagcctc cgcgaacgac agcacgccgg
     3661 aggtgtactt tttcgcatac ggcgaggcat cgataagctc ccggacttcc tccggttttc
     3721 cctgcagcac ggtcgccccc tcgcgctgcc ggtcttttcc cagcaggtaa tccaccggac
     3781 cggcaccacc accgcgcccc cggggatgaa atttaacgat catcatcccc ccctttttcc
     3841 agcaccgcat gccgcagccg ctccagtccc gcgtctattg ccatcagggc ggccacaatc
     3901 tgcacccgat catgaccggc accaacggca ttcactttcc gggcgatctg gttcaggttg
     3961 ttacccatac cggcaagctg gcgcagcagc gccggcgata ttgacggcag tctgcaggca
     4021 cgcgccggct tctcatcgag gcaggtctga cg
//
