LOCUS       NZ_CP090195             2495 bp    DNA     circular CON 03-APR-2024
DEFINITION  Enterobacter hormaechei strain TUECL19003 plasmid pTUECL19003-3,
            complete sequence.
ACCESSION   NZ_CP090195
VERSION     NZ_CP090195.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24425646
            Assembly: GCF_021398115.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Chen,C.M., Chen,B.H., Hong,Y.P. and Tang,H.L.
  TITLE     The emergence of mcr-9 and carbapenemase gene co-harboring
            Enterobacter hormaechei in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Chen,C.M., Chen,B.H., Hong,Y.P. and Tang,H.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-DEC-2021) Microbiology and Immunology, China Medical
            University, No. 91, Xueshi Road, Taichung 40402, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021398115.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 06:02:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,871
            CDSs (total)                      :: 4,754
            Genes (coding)                    :: 4,673
            CDSs (with protein)               :: 4,673
            Genes (RNA)                       :: 117
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 81
            CDSs (without protein)            :: 81
            Pseudo Genes (ambiguous residues) :: 0 of 81
            Pseudo Genes (frameshifted)       :: 34 of 81
            Pseudo Genes (incomplete)         :: 53 of 81
            Pseudo Genes (internal stop)      :: 11 of 81
            Pseudo Genes (multiple problems)  :: 16 of 81
            Pseudo Genes (short protein)      :: 1 of 81
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090195.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="TUECL19003"
                     /isolation_source="Pus"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pTUECL19003-3"
                     /geo_loc_name="Taiwan: Taichung"
                     /lat_lon="24.24 N 120.54 E"
                     /collection_date="2018-04-07"
                     /collected_by="Tungs' Taichung MetroHarbor Hospital
                     (TTMHH)"
     gene            complement(join(2493..2495,1..183))
                     /locus_tag="LZU72_RS24300"
                     /old_locus_tag="LZU72_24300"
     CDS             complement(join(2493..2495,1..183))
                     /locus_tag="LZU72_RS24300"
                     /old_locus_tag="LZU72_24300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(549..776)
                     /locus_tag="LZU72_RS24305"
                     /old_locus_tag="LZU72_24305"
     CDS             complement(549..776)
                     /locus_tag="LZU72_RS24305"
                     /old_locus_tag="LZU72_24305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1984..2202
                     /locus_tag="LZU72_RS24310"
                     /old_locus_tag="LZU72_24310"
     CDS             1984..2202
                     /locus_tag="LZU72_RS24310"
                     /old_locus_tag="LZU72_24310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          2359..2446
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(1192..1720)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 cgcattttcc tcgcctatct gtgcgttcag catggcgtaa agcgcttcgg cctgatcgtg
       61 caggtgctca cagcagccgg cagcctcatc cagatccatc tgctcgagcc gctcaaggag
      121 gagaagtgtc tgtgcgcgga taaatttggc catattgagg gcggcggatt cctgtctggt
      181 cactggtgat tttccccgtc tggtgatgat ttttgcgtga aaagagcatg gcgtcattct
      241 ggtgcatagt catgcatgcc gttaaaattt aacaggcgcg tttctgacgg gttccggggt
      301 ggtttgttgt ggtttttgtc atggtttcgt caggaacgcg ctgaacgcgt ctcaggcggt
      361 gcgggcaacg gatgttatgg taaattcttg ggggcttgat tataaaatac cgcacttcct
      421 cttatgtctt gtgcttttta gacaaccctg aaagctttta gctttggtga tgcaatttgc
      481 tgggattttg gcggagaacc acaggtaaag aaaaaggcca cattagcggc ctttttcgga
      541 gaagatgctc agtgcggaat ttcggagact tctttaacgt cggttttatt gatctgctgt
      601 ttgacaccat tcgcgtctgt atagccaagc aggcctgagt ctgattcttt aggtttgccg
      661 tcgctgacaa tagtgcgacc gtcattggtg tgtatggcat agcttgtgcg cgtgcagccg
      721 gtgagggctg aaagcgcaac tgccgctgcg aacactgaaa caaaaatctt tttcaaagcc
      781 agctcctttt atccatatca gttttggtca ctaaccatct aactataggt cattttttat
      841 gtgaaaagag gcttgatggt gggctgtata tcgagttagg cgcgaggtgc tatggtcaaa
      901 gtgtggtgtc aggcggggag gaggcttata tgagatgtaa tccggccgat acatatacca
      961 agatgattta agtattcctc tttgtgaggt tggatgtcta atttataaag gatcttcttg
     1021 agatcctttt tttccgcgcg taatctcttg ccctgtaaac gaaaaaacca ccctggcagg
     1081 tggtttttcg aaggttaggt aatcctggca gatcccctaa ccgtggtaac agtcttgtgc
     1141 gagacatgtc accaaatttg tcctttcagt gtagcctcac taaggccgcc acttcaagaa
     1201 ctcttgagac atctctcgca catcctgttt gccaatggcc gttgccaatg gcgattagtc
     1261 gtgtctttcc gggttggact caagttgata gttaccggat aaggcgcagc ggtcggactg
     1321 aacggggggt tcgtgcatac agtccatcct ggagcgaact gccttcccgg aactgagtgt
     1381 caggcgtgga atgagaaacc gcggccataa cagcggagtg acaccggtaa accgaaaggc
     1441 aggaatgcgg gggagcacga gggagccacc agggggaaac gcctggtatc tttaagccgc
     1501 atcgggtttc gccaccactg atttgagcgt cagattctgt gatgcttgtc aggggggcgg
     1561 agcctatgga aaaacggctt tggcgcggcc ttatgctttc ttcgttaagt atcttcctgg
     1621 catcccccag gaaatttctg atccatccgt aagcccgtcc cgctcgccgc agccgaacga
     1681 ccgagcggag cgagtcagtg agcgaggaag cggaatatat tctgtatcac attttctcct
     1741 gacgcgtttt ctttcacttt ctgcgcctgt cttatgtggc attaatgcta tgtgttactg
     1801 ccatgctaca tcttaagcca gtatacactc cgctagtgct ccgtgactgg tccggcgctg
     1861 cgcccggaac ccgcctgtac cggttcagca gccgttccgg cctgactgca attttttttt
     1921 tttcatccct gcccgctacc ctgtaaacct ttcttctgcg ttgccgttaa cagtaggtaa
     1981 gccatgtttg gtttttcttc cggagccctg atgactctta gtgatgatga gcgacacctg
     2041 cttgtgtccg ttgtttcggt ctggctacgg cgtgccggag gggatgccgg agccatgatg
     2101 ctggatgcat accggcagat tttgtctgaa accgaaccgg ccgtaaggac tgtcatgctc
     2161 gaatttcttg aatccgttcg cattcattac atttcgtcct gagcattttc tgtatttctg
     2221 tccatactta aacgaggcgg ccgtcacgga cggtggtcgt cgttccatga tgctgttatg
     2281 gacgagtgag agtaatctaa tctaacttga ttgagttccg ggcgtgccgc ccggtttttt
     2341 ttgctgtttc ccggtgtccg ttccgggaca ggatgtgcat ttgtaatacc gcgcacgcgc
     2401 cggcatcaca aataccctgg tcagggctgc gccccgacac cccgccatcg cctcacggcc
     2461 gcgcactgaa ttgcgcaccc gttcaccgat tttca
//
