LOCUS       NZ_CP090149             2495 bp    DNA     circular CON 03-APR-2024
DEFINITION  Enterobacter hormaechei strain TUECL19001 plasmid pTUECL19001-3,
            complete sequence.
ACCESSION   NZ_CP090149
VERSION     NZ_CP090149.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24341409
            Assembly: GCF_021397695.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Chen,C.M., Chen,B.H., Hong,Y.P. and Tang,H.L.
  TITLE     The emergence of mcr-9 and carbapenemase gene co-harboring
            Enterobacter hormaechei in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Chen,C.M., Chen,B.H., Hong,Y.P. and Tang,H.L.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-DEC-2021) Microbiology and Immunology, China Medical
            University, No. 91, Xueshi Road, Taichung 40402, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_021397695.1-RS_2024_04_03
            Annotation Date                   :: 04/03/2024 06:14:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,880
            CDSs (total)                      :: 4,763
            Genes (coding)                    :: 4,681
            CDSs (with protein)               :: 4,681
            Genes (RNA)                       :: 117
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 82
            CDSs (without protein)            :: 82
            Pseudo Genes (ambiguous residues) :: 0 of 82
            Pseudo Genes (frameshifted)       :: 34 of 82
            Pseudo Genes (incomplete)         :: 54 of 82
            Pseudo Genes (internal stop)      :: 11 of 82
            Pseudo Genes (multiple problems)  :: 16 of 82
            Pseudo Genes (short protein)      :: 1 of 82
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090149.1.
            Bacteria and source DNA available from Tungs' Taichung MetroHarbor
            Hospital (TTMHH).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="TUECL19001"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pTUECL19001-3"
                     /geo_loc_name="Taiwan: Taichung"
                     /lat_lon="24.24 N 120.54 E"
                     /collection_date="2018-02-28"
                     /collected_by="Tungs' Taichung MetroHarbor Hospital
                     (TTMHH)"
     gene            686..913
                     /locus_tag="LXD76_RS24345"
                     /old_locus_tag="LXD76_24345"
     CDS             686..913
                     /locus_tag="LXD76_RS24345"
                     /old_locus_tag="LXD76_24345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1279..1464
                     /locus_tag="LXD76_RS24350"
                     /old_locus_tag="LXD76_24350"
     CDS             1279..1464
                     /locus_tag="LXD76_RS24350"
                     /old_locus_tag="LXD76_24350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1755..1973)
                     /locus_tag="LXD76_RS24355"
                     /old_locus_tag="LXD76_24355"
     CDS             complement(1755..1973)
                     /locus_tag="LXD76_RS24355"
                     /old_locus_tag="LXD76_24355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1512..1599)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          18..451
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.772"
                     /coverage="85.0"
                     /evalue="8.43e-111"
     Typing          2226..2495
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.051"
                     /coverage="96.0"
                     /evalue="4.03e-89"
ORIGIN
        1 ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcactccgct gttatggccg
       61 cggtttctca ttccacgcct gacactcagt tccgggaagg cagttcgctc caggatggac
      121 tgtatgcacg aaccccccgt tcagtccgac cgctgcgcct tatccggtaa ctatcaactt
      181 gagtccaacc cggaaagaca cgactaatcg ccattggcaa cggccattgg caaacaggat
      241 gtgcgagaga tgtctcaaga gttcttgaag tggcggcctt agtgaggcta cactgaaagg
      301 acaaatttgg tgacatgtct cgcacaagac tgttaccacg gttaggggat ctgccaggat
      361 tacctaacct tcgaaaaacc acctgccagg gtggtttttt cgtttacagg gcaagagatt
      421 acgcgcggaa aaaaaggatc tcaagaagat cctttataaa ttagacatcc aacctcacaa
      481 agaggaatac ttaaatcatc ttggtatatg tatcggccgg attacatctc atataagcct
      541 cctccccgcc tgacaccaca ctttgaccat agcacctcgc gcctaactcg atatacagcc
      601 caccatcaag cctcttttca cataaaaaat gacctatagt tagatggtta gtgaccaaaa
      661 ctgatatgga taaaaggagc tggctttgaa aaagattttt gtttcagtgt tcgcagcggc
      721 agttgcgctt tcagccctca ccggctgcac gcgcacaagc tatgccatac acaccaatga
      781 cggtcgcact attgtcagcg acggcaaacc taaagaatca gactcaggcc tgcttggcta
      841 tacagacgcg aatggtgtca aacagcagat caataaaacc gacgttaaag aagtctccga
      901 aattccgcac tgagcatctt ctccgaaaaa ggccgctaat gtggcctttt tctttacctg
      961 tggttctccg ccaaaatccc agcaaattgc atcaccaaag ctaaaagctt tcagggttgt
     1021 ctaaaaagca caagacataa gaggaagtgc ggtattttat aatcaagccc ccaagaattt
     1081 accataacat ccgttgcccg caccgcctga gacgcgttca gcgcgttcct gacgaaacca
     1141 tgacaaaaac cacaacaaac caccccggaa cccgtcagaa acgcgcctgt taaattttaa
     1201 cggcatgcat gactatgcac cagaatgacg ccatgctctt ttcacgcaaa aatcatcacc
     1261 agacggggaa aatcaccagt gaccagacag gaatccgccg ccctcaatat ggccaaattt
     1321 atccgcgcac agacacttct cctccttgag cggctcgagc agatggatct ggatgaggct
     1381 gccggctgct gtgagcacct gcacgatcag gccgaagcgc tttacgccat gctgaacgca
     1441 cagataggcg aggaaaatgc gtgaaaatcg gtgaacgggt gcgcaattca gtgcgcggcc
     1501 gtgaggcgat ggcggggtgt cggggcgcag ccctgaccag ggtatttgtg atgccggcgc
     1561 gtgcgcggta ttacaaatgc acatcctgtc ccggaacgga caccgggaaa cagcaaaaaa
     1621 aaccgggcgg cacgcccgga actcaatcaa gttagattag attactctca ctcgtccata
     1681 acagcatcat ggaacgacga ccaccgtccg tgacggccgc ctcgtttaag tatggacaga
     1741 aatacagaaa atgctcagga cgaaatgtaa tgaatgcgaa cggattcaag aaattcgagc
     1801 atgacagtcc ttacggccgg ttcggtttca gacaaaatct gccggtatgc atccagcatc
     1861 atggctccgg catcccctcc ggcacgccgt agccagaccg aaacaacgga cacaagcagg
     1921 tgtcgctcat catcactaag agtcatcagg gctccggaag aaaaaccaaa catggcttac
     1981 ctactgttaa cggcaacgca gaagaaaggt ttacagggta gcgggcaggg atgaaaaaaa
     2041 aaaaattgca gtcaggccgg aacggctgct gaaccggtac aggcgggttc cgggcgcagc
     2101 gccggaccag tcacggagca ctagcggagt gtatactggc ttaagatgta gcatggcagt
     2161 aacacatagc attaatgcca cataagacag gcgcagaaag tgaaagaaaa cgcgtcagga
     2221 gaaaatgtga tacagaatat attccgcttc ctcgctcact gactcgctcc gctcggtcgt
     2281 tcggctgcgg cgagcgggac gggcttacgg atggatcaga aatttcctgg gggatgccag
     2341 gaagatactt aacgaagaaa gcataaggcc gcgccaaagc cgtttttcca taggctccgc
     2401 ccccctgaca agcatcacag aatctgacgc tcaaatcagt ggtggcgaaa cccgatgcgg
     2461 cttaaagata ccaggcgttt ccccctggtg gctcc
//
