LOCUS       NZ_CP090144             4593 bp    DNA     circular CON 20-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain 5ASAL09
            plasmid p5ASAL09_4.6k, complete sequence.
ACCESSION   NZ_CP090144
VERSION     NZ_CP090144.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24108485
            Assembly: GCF_021397645.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Chen,C.M.
  TITLE     A nosocomial salmonellosis outbreak caused by blaOXA-48-carrying
            extensively drug-resistant Salmonella enterica serovar Goldcoast in
            a hospital respiratory care ward in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Chen,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2021) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-NOV-2021
            Assembly Method                   :: unicycler v. 0.8.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 319.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/20/2023 04:10:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,837
            CDSs (total)                      :: 4,722
            Genes (coding)                    :: 4,590
            CDSs (with protein)               :: 4,590
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 132
            CDSs (without protein)            :: 132
            Pseudo Genes (ambiguous residues) :: 0 of 132
            Pseudo Genes (frameshifted)       :: 46 of 132
            Pseudo Genes (incomplete)         :: 98 of 132
            Pseudo Genes (internal stop)      :: 27 of 132
            Pseudo Genes (multiple problems)  :: 34 of 132
            Pseudo Genes (short protein)      :: 1 of 132
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090144.1.
            Bacteria and source DNA available from Tungs' Taichung MetroHarbor
            Hospital.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="5ASAL09"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="p5ASAL09_4.6k"
                     /geo_loc_name="Taiwan: Taichung"
                     /lat_lon="24.14 N 120.33 E"
                     /collection_date="2021-01-24"
                     /collected_by="Tungs' Taichung MetroHarbor Hospital
                     (TTMHH)"
     gene            717..1556
                     /locus_tag="LZK30_RS24170"
                     /old_locus_tag="LZK30_24170"
     CDS             717..1556
                     /locus_tag="LZK30_RS24170"
                     /old_locus_tag="LZK30_24170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(2244..2477)
                     /locus_tag="LZK30_RS24175"
                     /old_locus_tag="LZK30_24175"
     CDS             complement(2244..2477)
                     /locus_tag="LZK30_RS24175"
                     /old_locus_tag="LZK30_24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2484..3044)
                     /locus_tag="LZK30_RS24180"
                     /old_locus_tag="LZK30_24180"
     CDS             complement(2484..3044)
                     /locus_tag="LZK30_RS24180"
                     /old_locus_tag="LZK30_24180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<3079..3513)
                     /locus_tag="LZK30_RS24185"
                     /old_locus_tag="LZK30_24185"
                     /pseudo=""
     CDS             complement(<3079..3513)
                     /locus_tag="LZK30_RS24185"
                     /old_locus_tag="LZK30_24185"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3722..4045)
                     /locus_tag="LZK30_RS24190"
                     /old_locus_tag="LZK30_24190"
     CDS             complement(3722..4045)
                     /locus_tag="LZK30_RS24190"
                     /old_locus_tag="LZK30_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4108..4299
                     /locus_tag="LZK30_RS24195"
                     /old_locus_tag="LZK30_24195"
     CDS             4108..4299
                     /locus_tag="LZK30_RS24195"
                     /old_locus_tag="LZK30_24195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001677262.1"
                     /translation="MTKQEKTAINMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(4388..4472)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(267..718)
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(2147..3732)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggcgagcggt atcagctcac tcaaagacgg tgatgcggtt atccacagaa tcaggggata
       61 acgccaaaag aaacatgtga gcaaaaggcc aggaacagga agaaggccgc gccgctggcg
      121 tttttccata ggctccgccc ccctgacgag catcacaaaa acagatgctc aagtcagagg
      181 tggcgaaacc cgacaggact ataaagatac caggcgtttc cccctggaag ctccctcgtg
      241 cgctctcctg ttccgaccct gccgcttacc ggatacctgt ccgcctttct cccttcggga
      301 agcgtggcgc tttctcatag ctcacgctgt tggtatctcg gcccggtgta ggtcgttcgc
      361 tccaagctgg gctgtgtgca cgaacccccc gttcagcccg accgctgcgc cttatccggt
      421 aactatcgtc ttgagtccaa cccggaaaga cacgtaaaaa cgccactggc agcagccatt
      481 ggtaaccgtt tagaggagtt agtcttgaag ttatgcgccg gttaaggcta aactgaaagg
      541 acagatttgg tggctgtgct cctccaagcc agttaccttg gttcaaagag ttgctgctct
      601 gagaaccttc gaaaagccgc cttgctgggc ggttttttcg tttacggaca agactacctt
      661 caggatcgtt agatctcaag acaatcatgc atagtgagca tacacaggag ccgaacttgc
      721 ttacactgtt catctttttt gttttattaa tagctgcatg tttcttttgt tttgctccac
      781 cacgaagagg atatgacaga aatgagatca ttccatacaa aataaaacta tcaataaata
      841 aatatcgcct ttacatatac tcatcgggaa aggtaagaca atacctttta tttttagtta
      901 ttttatcact gtactactcc atagcggaac catttaagtc tgagttaata aaaaacatat
      961 catattcact gatggctgca tttatttttg atacagggct taattttagc aaggagaata
     1021 taactaaagg agtgatttca acaaggtggc ataatgacct atattcatca tttgagagaa
     1081 tgaaagcaat taataaaatt tactacccat ccaacaaaga gataaacaca gaaggtctat
     1141 ccaaagccat cacatcatct cttttcaatg atgacgcgaa ctcgttcgca aagagagatt
     1201 ttcgcttgat gtgggactta tcttctgaaa aatatctttc ctataaagaa ataataataa
     1261 gaaaaggcga taagcttgac gctgtatgct tgagatttat aaatgatgac tacaagtttt
     1321 tagttaattt caacagagat gaagaggttt tcaaatactt tccatctata atgcaacctt
     1381 cactcaaaac atatagagcg ttatcaagac tagtaaactc aatcaaagat ccttctagat
     1441 ttaagttcac gacagagtca ttagaaatgg agttactaga atacttagag ttaagaaatg
     1501 aattattcaa tgacatagaa gaagtaatgg gtagctatgc tcagagggca ccatagttca
     1561 tgatagccct cgatagtact tacttatatt tttagagagg tttaagtgta agtagaggga
     1621 gtaacacctg gtttttcagc atccactcca atgaatgctg acaccgatac gcgataattc
     1681 tctttatcgt agcaaaatca tcctccagat tgcggttgag aataggttca tggtgcgcaa
     1741 tacgattgcg cagttttctc acgggacttg ttagcagtaa tgcttccccc cggggacaaa
     1801 cgacagagat atacaacaaa ggcccgcaat taaaatactc cgtatttacc ataacgtcgc
     1861 attgcgcgta ccgcttaaac gcgttcagcg cgatcacggc agcagacagg taaaaacagc
     1921 aacaaaccac ccgaaaaact gccgcgatcg cgcctggtaa attttaacct catgcatagt
     1981 tatgcgcgaa actgaatgac gatcagtttc gcacgttcca gccgtcgaac ggggcaaaat
     2041 ggggaggttt ggatattgtt aatgctaatg tacgtacatt aacattggcg ccatccgggt
     2101 agggcgtgcc acaaactggc tcgatttcag ggggtacccc ggtcacatcc ccattgacgg
     2161 gccacgccag atccgcgctt cgggttcctg ctcttcatgc cagcgccggg caagctcctg
     2221 cgcctgacgc tcctgttcat cccttatctg ttgttcgtga taaataaccg actcaagcgg
     2281 tcgacttgtc cggctaatag ctgcacctgc tgactcaagt tcacgacacg ctcgttcagt
     2341 atcgcgttgt tctgttgcgt aaccgcgtgc atcttctgca attctgcgaa ggcgctctcc
     2401 cactcgttca gccgccgcat atagtcctgt tgcaaatgct ctaaggcgtt cagcaaatgc
     2461 ccttccagtt ccgtcatact cgtttactcc ctgaccagcc tcacggcgtt cttgtcgccc
     2521 accgtccagg tgttttcccc tttcaccccg tccggcagca ccagaaattt cccgttctcg
     2581 ccattgacga acgtcacccc ccaggttttt gcctcgagtt tcgccagcgt gttttcctgc
     2641 tctctgatgg tcaagatatt tttcgcaatc ctgctttcct gccactgaat cagcccccag
     2701 caccccagga aaatgccgcc cgtgacgctg agcgcggtca gcgccggaaa cagtacccgc
     2761 cctttgatca cctgccagag caggtttttc tgctgccggg acagttcggc ctctgtggtg
     2821 ctgagctgcg tgctcacggt ggtgctcagc gtatccagtt gctgtttcac ggatgttgta
     2881 tgttcgctga tagcgtctct gattttctgc ctgtttaagc tcagtgcctt gtctacagac
     2941 tcttctagct tcctgaactc gctgttcagc atgttctcgg tagaagcggc tcgctctttc
     3001 agtttcttct cgaagtccgt tcccatttgt aaaagattgc tcatacagcg ccccctttag
     3061 cctgagattc cgccccccct ccgggtcggc aatactgata ctgcttctgg ttgtcctcac
     3121 cacctcaaaa cctgccgctg tgagcgcctc agtgacatcc tgacgcgttt ttattgctcc
     3181 ggcacggtaa agcgcctcaa gaccccgtgt aatcgcttct gcggcctcct gtttcgcttt
     3241 tggcagatta ttcggtgtga caagcgtccg tctgttctcc ggtgcgttcg ggtcacgcag
     3301 cccgtaatga tgattaacca gcgtctgcca ggcatttatc ctcggcctgt ccgcacggtc
     3361 gtagtacggc tggaggcgct taccgctctg tagttccatg ttcggaatga caaaattcag
     3421 ttcgagccgc cccttatcct ggtgttccac ccagagaatg ctgtactggt ctttttcgag
     3481 accgggcata agaacacgct caaagctcgt catcactctt tcgcgttcac ccggcggtaa
     3541 ctccttctcc gcgaacgaca gaacgcctga cgtgtatttc ttcgaaaatg gcgtggcatc
     3601 aatgagttcc cggatttctt ccgggttacc ccggagcacc gttgcgcctt cgcggttacg
     3661 ctcccgcccc agcaggtaat cgaccgggcc acttccaccg cctttccccc tggcatgaaa
     3721 tttaactatc atcccgtccc ccctgttccc tgacagcctg ccgcaactgg cgcaattcac
     3781 cctcgatggc catcagagcg gccaccacat gaacccggtc aatcgaagac cagtggccgc
     3841 tgttcacctt ccgggctgtc tggttcagat tgttcccgat ggcagccaga tgccgcagca
     3901 atggcggcga tagtgtcggc agttttcctg tgcgcgcaac cggctccccc agacagaccc
     3961 gccgcatcca ttctgccagt cgtttaccct cgcagcgttc cagtaaccgg gcgtgctcct
     4021 catcgctaac ccgtattgtg agcatcttct cgcgtttcat cggtatcatt ccccctaaaa
     4081 aatcccctat taaggagcct taagaccatg accaaacagg aaaaaacagc cattaacatg
     4141 gcccgcttta tcagaagcca gacgctgacc ctgctggaaa aactcaacga gctggacgcg
     4201 gacgaacagg cagacatctg cgaatcactt cacgaccacg ccgacgaact ctaccgtagt
     4261 tgcctcgcac gcttcggcga tgacggtgaa agcaactgaa acatgcagct cccggagacg
     4321 ttcacagctt gcctgtgagc ggatgccggg agcagacaag cccgtcaggg cgcgtcagcg
     4381 ggttttagcg ggtgtcgggg cgcagccctg acccagtcac gtagcgatag cggagtgtat
     4441 actggcttaa ctatgtggca tcagtgcgga ttataagaaa agtgcaccat atgcggtgtg
     4501 aaataccgca cagatgcgta aggagaaaat gccgcatcag gcgctcttcc gcttcctcgc
     4561 tcactgactc gctacgctcg gtcgttcggc tgc
//
