LOCUS       NZ_CP090136             4593 bp    DNA     circular CON 20-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Goldcoast strain 5ASAL07
            plasmid p5ASAL07_4.6k, complete sequence.
ACCESSION   NZ_CP090136
VERSION     NZ_CP090136.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN24108483
            Assembly: GCF_021397675.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Goldcoast
  ORGANISM  Salmonella enterica subsp. enterica serovar Goldcoast
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Chen,C.M.
  TITLE     A nosocomial salmonellosis outbreak caused by blaOXA-48-carrying
            extensively drug-resistant Salmonella enterica serovar Goldcoast in
            a hospital respiratory care ward in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4593)
  AUTHORS   Chiou,C.S., Chen,B.H., Wang,Y.W. and Chen,C.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2021) Center for Diagnostics and Vaccine
            Development, Centers for Disease Control, Taiwan, No.20, Wenxin S.
            3rd Rd., Nantun Dist., Taichung City 408, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 08-NOV-2021
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 139.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/20/2023 04:00:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,838
            CDSs (total)                      :: 4,723
            Genes (coding)                    :: 4,590
            CDSs (with protein)               :: 4,590
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 47 of 133
            Pseudo Genes (incomplete)         :: 98 of 133
            Pseudo Genes (internal stop)      :: 26 of 133
            Pseudo Genes (multiple problems)  :: 33 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP090136.1.
            Bacteria and source DNA available from Tungs' Taichung MetroHarbor
            Hospital.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Goldcoast"
                     /mol_type="genomic DNA"
                     /strain="5ASAL07"
                     /serovar="Goldcoast"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:260678"
                     /plasmid="p5ASAL07_4.6k"
                     /geo_loc_name="Taiwan: Taichung"
                     /lat_lon="24.14 N 120.33 E"
                     /collection_date="2021-01-24"
                     /collected_by="Tungs' Taichung MetroHarbor Hospital
                     (TTMHH)"
     gene            join(4507..4593,1..237)
                     /locus_tag="LZK29_RS24170"
                     /old_locus_tag="LZK29_24170"
     CDS             join(4507..4593,1..237)
                     /locus_tag="LZK29_RS24170"
                     /old_locus_tag="LZK29_24170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            446..>880
                     /locus_tag="LZK29_RS24175"
                     /old_locus_tag="LZK29_24175"
                     /pseudo=""
     CDS             446..>880
                     /locus_tag="LZK29_RS24175"
                     /old_locus_tag="LZK29_24175"
                     /inference="COORDINATES: protein motif:HMM:NF015397.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            915..1475
                     /locus_tag="LZK29_RS24180"
                     /old_locus_tag="LZK29_24180"
     CDS             915..1475
                     /locus_tag="LZK29_RS24180"
                     /old_locus_tag="LZK29_24180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            1482..1715
                     /locus_tag="LZK29_RS24185"
                     /old_locus_tag="LZK29_24185"
     CDS             1482..1715
                     /locus_tag="LZK29_RS24185"
                     /old_locus_tag="LZK29_24185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2403..3242)
                     /locus_tag="LZK29_RS24190"
                     /old_locus_tag="LZK29_24190"
     CDS             complement(2403..3242)
                     /locus_tag="LZK29_RS24190"
                     /old_locus_tag="LZK29_24190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(4253..4444)
                     /locus_tag="LZK29_RS24195"
                     /old_locus_tag="LZK29_24195"
     CDS             complement(4253..4444)
                     /locus_tag="LZK29_RS24195"
                     /old_locus_tag="LZK29_24195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001677262.1"
                     /translation="MTKQEKTAINMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          4081..4165
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(3512..4070)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.761"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          228..1813
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          4475..4593
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="82.5"
                     /coverage="100.0"
                     /evalue="2.78e-13"
ORIGIN
        1 gtctgtctgg gggagccggt tgcgcgcaca ggaaaactgc cgacactatc gccgccattg
       61 ctgcggcatc tggctgccat cgggaacaat ctgaaccaga cagcccggaa ggtgaacagc
      121 ggccactggt cttcgattga ccgggttcat gtggtggccg ctctgatggc catcgagggt
      181 gaattgcgcc agttgcggca ggctgtcagg gaacaggggg gacgggatga tagttaaatt
      241 tcatgccagg gggaaaggcg gtggaagtgg cccggtcgat tacctgctgg ggcgggagcg
      301 taaccgcgaa ggcgcaacgg tgctccgggg taacccggaa gaaatccggg aactcattga
      361 tgccacgcca ttttcgaaga aatacacgtc aggcgttctg tcgttcgcgg agaaggagtt
      421 accgccgggt gaacgcgaaa gagtgatgac gagctttgag cgtgttctta tgcccggtct
      481 cgaaaaagac cagtacagca ttctctgggt ggaacaccag gataaggggc ggctcgaact
      541 gaattttgtc attccgaaca tggaactaca gagcggtaag cgcctccagc cgtactacga
      601 ccgtgcggac aggccgagga taaatgcctg gcagacgctg gttaatcatc attacgggct
      661 gcgtgacccg aacgcaccgg agaacagacg gacgcttgtc acaccgaata atctgccaaa
      721 agcgaaacag gaggccgcag aagcgattac acggggtctt gaggcgcttt accgtgccgg
      781 agcaataaaa acgcgtcagg atgtcactga ggcgctcaca gcggcaggtt ttgaggtggt
      841 gaggacaacc agaagcagta tcagtattgc cgacccggag ggggggcgga atctcaggct
      901 aaagggggcg ctgtatgagc aatcttttac aaatgggaac ggacttcgag aagaaactga
      961 aagagcgagc cgcttctacc gagaacatgc tgaacagcga gttcaggaag ctagaagagt
     1021 ctgtagacaa ggcactgagc ttaaacaggc agaaaatcag agacgctatc agcgaacata
     1081 caacatccgt gaaacagcaa ctggatacgc tgagcaccac cgtgagcacg cagctcagca
     1141 ccacagaggc cgaactgtcc cggcagcaga aaaacctgct ctggcaggtg atcaaagggc
     1201 gggtactgtt tccggcgctg accgcgctca gcgtcacggg cggcattttc ctggggtgct
     1261 gggggctgat tcagtggcag gaaagcagga ttgcgaaaaa tatcttgacc atcagagagc
     1321 aggaaaacac gctggcgaaa ctcgaggcaa aaacctgggg ggtgacgttc gtcaatggcg
     1381 agaacgggaa atttctggtg ctgccggacg gggtgaaagg ggaaaacacc tggacggtgg
     1441 gcgacaagaa cgccgtgagg ctggtcaggg agtaaacgag tatgacggaa ctggaagggc
     1501 atttgctgaa cgccttagag catttgcaac aggactatat gcggcggctg aacgagtggg
     1561 agagcgcctt cgcagaattg cagaagatgc acgcggttac gcaacagaac aacgcgatac
     1621 tgaacgagcg tgtcgtgaac ttgagtcagc aggtgcagct attagccgga caagtcgacc
     1681 gcttgagtcg gttatttatc acgaacaaca gataagggat gaacaggagc gtcaggcgca
     1741 ggagcttgcc cggcgctggc atgaagagca ggaacccgaa gcgcggatct ggcgtggccc
     1801 gtcaatgggg atgtgaccgg ggtaccccct gaaatcgagc cagtttgtgg cacgccctac
     1861 ccggatggcg ccaatgttaa tgtacgtaca ttagcattaa caatatccaa acctccccat
     1921 tttgccccgt tcgacggctg gaacgtgcga aactgatcgt cattcagttt cgcgcataac
     1981 tatgcatgag gttaaaattt accaggcgcg atcgcggcag tttttcgggt ggtttgttgc
     2041 tgtttttacc tgtctgctgc cgtgatcgcg ctgaacgcgt ttaagcggta cgcgcaatgc
     2101 gacgttatgg taaatacgga gtattttaat tgcgggcctt tgttgtatat ctctgtcgtt
     2161 tgtccccggg gggaagcatt actgctaaca agtcccgtga gaaaactgcg caatcgtatt
     2221 gcgcaccatg aacctattct caaccgcaat ctggaggatg attttgctac gataaagaga
     2281 attatcgcgt atcggtgtca gcattcattg gagtggatgc tgaaaaacca ggtgttactc
     2341 cctctactta cacttaaacc tctctaaaaa tataagtaag tactatcgag ggctatcatg
     2401 aactatggtg ccctctgagc atagctaccc attacttctt ctatgtcatt gaataattca
     2461 tttcttaact ctaagtattc tagtaactcc atttctaatg actctgtcgt gaacttaaat
     2521 ctagaaggat ctttgattga gtttactagt cttgataacg ctctatatgt tttgagtgaa
     2581 ggttgcatta tagatggaaa gtatttgaaa acctcttcat ctctgttgaa attaactaaa
     2641 aacttgtagt catcatttat aaatctcaag catacagcgt caagcttatc gccttttctt
     2701 attattattt ctttatagga aagatatttt tcagaagata agtcccacat caagcgaaaa
     2761 tctctctttg cgaacgagtt cgcgtcatca ttgaaaagag atgatgtgat ggctttggat
     2821 agaccttctg tgtttatctc tttgttggat gggtagtaaa ttttattaat tgctttcatt
     2881 ctctcaaatg atgaatatag gtcattatgc caccttgttg aaatcactcc tttagttata
     2941 ttctccttgc taaaattaag ccctgtatca aaaataaatg cagccatcag tgaatatgat
     3001 atgtttttta ttaactcaga cttaaatggt tccgctatgg agtagtacag tgataaaata
     3061 actaaaaata aaaggtattg tcttaccttt cccgatgagt atatgtaaag gcgatattta
     3121 tttattgata gttttatttt gtatggaatg atctcatttc tgtcatatcc tcttcgtggt
     3181 ggagcaaaac aaaagaaaca tgcagctatt aataaaacaa aaaagatgaa cagtgtaagc
     3241 aagttcggct cctgtgtatg ctcactatgc atgattgtct tgagatctaa cgatcctgaa
     3301 ggtagtcttg tccgtaaacg aaaaaaccgc ccagcaaggc ggcttttcga aggttctcag
     3361 agcagcaact ctttgaacca aggtaactgg cttggaggag cacagccacc aaatctgtcc
     3421 tttcagttta gccttaaccg gcgcataact tcaagactaa ctcctctaaa cggttaccaa
     3481 tggctgctgc cagtggcgtt tttacgtgtc tttccgggtt ggactcaaga cgatagttac
     3541 cggataaggc gcagcggtcg ggctgaacgg ggggttcgtg cacacagccc agcttggagc
     3601 gaacgaccta caccgggccg agataccaac agcgtgagct atgagaaagc gccacgcttc
     3661 ccgaagggag aaaggcggac aggtatccgg taagcggcag ggtcggaaca ggagagcgca
     3721 cgagggagct tccaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc
     3781 tctgacttga gcatctgttt ttgtgatgct cgtcaggggg gcggagccta tggaaaaacg
     3841 ccagcggcgc ggccttcttc ctgttcctgg ccttttgctc acatgtttct tttggcgtta
     3901 tcccctgatt ctgtggataa ccgcatcacc gtctttgagt gagctgatac cgctcgccgc
     3961 agccgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaagagcg cctgatgcgg
     4021 cattttctcc ttacgcatct gtgcggtatt tcacaccgca tatggtgcac ttttcttata
     4081 atccgcactg atgccacata gttaagccag tatacactcc gctatcgcta cgtgactggg
     4141 tcagggctgc gccccgacac ccgctaaaac ccgctgacgc gccctgacgg gcttgtctgc
     4201 tcccggcatc cgctcacagg caagctgtga acgtctccgg gagctgcatg tttcagttgc
     4261 tttcaccgtc atcgccgaag cgtgcgaggc aactacggta gagttcgtcg gcgtggtcgt
     4321 gaagtgattc gcagatgtct gcctgttcgt ccgcgtccag ctcgttgagt ttttccagca
     4381 gggtcagcgt ctggcttctg ataaagcggg ccatgttaat ggctgttttt tcctgtttgg
     4441 tcatggtctt aaggctcctt aataggggat tttttagggg gaatgatacc gatgaaacgc
     4501 gagaagatgc tcacaatacg ggttagcgat gaggagcacg cccggttact ggaacgctgc
     4561 gagggtaaac gactggcaga atggatgcgg cgg
//
