LOCUS       NZ_CP089002             1916 bp    DNA     circular CON 12-FEB-2024
DEFINITION  Klebsiella pneumoniae strain 56661 plasmid p56661-1.9, complete
            sequence.
ACCESSION   NZ_CP089002
VERSION     NZ_CP089002.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23552368
            Assembly: GCF_021166135.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Chen,L., Hao,M., Lin,Y. and Kreiswirth,B.
  TITLE     Whole genome sequencing of K. pneumoniae isolates
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Chen,L., Hao,M., Lin,Y. and Kreiswirth,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-DEC-2021) HMH-CDI, Hackensack-Meridian Health Center
            for Discovery and Innovation, 111 Ideation Way, Nutley, NJ 07110,
            USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-SEP-2021
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology :: Oxford Nanopore MiniION and Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/12/2024 03:45:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,968
            CDSs (total)                      :: 5,844
            Genes (coding)                    :: 5,674
            CDSs (with protein)               :: 5,674
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 70 of 170
            Pseudo Genes (incomplete)         :: 104 of 170
            Pseudo Genes (internal stop)      :: 30 of 170
            Pseudo Genes (multiple problems)  :: 31 of 170
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP089002.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="56661"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p56661-1.9"
                     /geo_loc_name="Russia"
     gene            839..1075
                     /locus_tag="LRZ77_RS26340"
                     /old_locus_tag="LRZ77_26340"
     CDS             839..1075
                     /locus_tag="LRZ77_RS26340"
                     /old_locus_tag="LRZ77_26340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012772745.1"
                     /translation="MARLTNLTPAEKKFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IELQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1334..1636)
                     /locus_tag="LRZ77_RS26345"
                     /old_locus_tag="LRZ77_26345"
     CDS             complement(1334..1636)
                     /locus_tag="LRZ77_RS26345"
                     /old_locus_tag="LRZ77_26345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005161566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="WP_031942343.1"
                     /translation="MSSMVYCRGCGKEIHETAKSCPHCGATNASSGSGEKSRIAAALLA
                     FFLGGFGAHKFYLGKIGQGFLYLIFCWTFIPAIIAFIEFIIYLCDSDEKFARKYG"
                     /name="TM2 domain-containing protein"
     Typing          501..674
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.5600000000000002e-86"
     Typing          complement(31..522)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.51"
                     /coverage="81.0"
                     /evalue="0.0"
ORIGIN
        1 taacttcaag actaactcct ctaaatcagt taccagtggc tgctgccagt ggcgataagt
       61 cgtgtctttc cgggttggac tcaagatgat agttaccgga taaggcgcag cagtcggact
      121 gaacgggggg ttcgtgcata cagtccatcc aggagcgaac tgccttcgcg gaactgagtg
      181 tcaggcgtgg aatgagataa acgcggccat aacagcggaa tgacaccggt aaaccgaaag
      241 gcaggaatgc gggggagcac gagggagcca ccagggggaa acgcctggta tctttaagcc
      301 gcatcgggtt tcgccaccac tgatttgagc gtcagatttc atgatgtttg tcaggggggc
      361 ggagcctatg gaaaaacggc ttcgccgcgg ccttatctct tccctgttaa gctccttcct
      421 ggtatctccc aggaaatttc cgccccgcct gtaagccggc accgctcgcc gcagccgaac
      481 gaccgagcgc agcgagtcag tgagcgagga agcggaatat atcctgtact acatatcctg
      541 ctgacgcgct ggtgccgcct tttttctcct gctacatgaa gcacttcact gatttccaca
      601 tccgtgccaa catagtcagc cagtatacac tccgctagcg ctacgtgact ggttcagggc
      661 tgcgccccga aacccgctaa aagctaatga cgcgcctgcg gcttgtccaa cgcctcacgg
      721 caccggatta aaatccgctc ccgttcaccg tttctgactg cctttcaccg tcgctggcgc
      781 ttcatcgttt ctactgtgtc tggcagactg tgctgattta ttctgactgg agaacgttat
      841 ggccagactg acaaacttga cgcctgcaga gaaaaaattt cttgatgatg ctgttgccgc
      901 agctgaaaga gcgtcaggta aaaagctaaa tcagcctaac cggcacatcg tcctgaacag
      961 agcgcgtgcg caaattgagt tgcagcgtta cgccgaccgc cagcgtgcat tacgtgagga
     1021 tgagcggcag cagtccgatt ttgcctggtc acgtccgcgc gcgccgcgcc gctgattttg
     1081 gcttttggcg gtttagtggt gctgacgctg cgaaatcacc tgccattcac ctgcgtgcat
     1141 agccatgcag tcgcgcagaa atcatcaggg gcgtttttcc gggatactgg tgaggaaagg
     1201 tgctggaaac ggccctgatg cagcaggatt gcgctgaggg cgcctgcggg ggtgcgggca
     1261 agggatgtta tgtttaatcg gtctgaccgt caggtacaaa aaaagccctt agggggcttt
     1321 tttttgctat gagttagcca tattttcgtg cgaatttttc atcggaatcg catagataaa
     1381 taataaactc aataaacgcg atgatcgcgg gtatgaatgt ccagcaaaaa attagataca
     1441 ggaacccctg tcctattttt cctaagtaaa atttatgtgc gccaaatcca ccaaggaaga
     1501 atgctaatag cgcggctgcg attctacttt tttcacctga acctgaagag gcgtttgtgg
     1561 ctccgcagtg cgggcatgac tttgctgttt cgtgtatttc cttgccacat cctcggcagt
     1621 aaaccattga actcattttt tatcctcgag cttattttaa ttgggatcat aatatccgat
     1681 gttttataac gatgtgtatc ctatgtgctc ggattggata gatttccatt acggtgaagg
     1741 atcttcttga gatcctttct gtggcgtcgt aatctcttgc tctgtaaacg aaaaaaccgc
     1801 cctgcaaggc ggtttttcga aggttctcag aacagcaact ctttgaaccg tggtaactgg
     1861 cttacgagga gcgcagtaac caaatctgtt ctttcagttt agccttaaca ggcgca
//
