LOCUS       NZ_CP088144             4634 bp    DNA     circular CON 16-JUN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Gallinarum strain
            SCPM-O-B-4548 plasmid pB-4548_2, complete sequence.
ACCESSION   NZ_CP088144
VERSION     NZ_CP088144.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23378277
            Assembly: GCF_023518195.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Gallinarum
  ORGANISM  Salmonella enterica subsp. enterica serovar Gallinarum
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4634)
  AUTHORS   Bogun,A., Kislichkina,A., Mukhina,T., Solomentsev,V., Skryabin,Y.,
            Shishkina,L., Sizova,A., Galkina,E. and Kurilova,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2021) Science Department, SRCAMB, Building 1,
            Obolensk, Moscow region 142279, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 330.23x
            Sequencing Technology :: Oxford Nanopore MinION; MGISeq-2000
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023518195.1-RS_2024_06_15
            Annotation Date                   :: 06/15/2024 05:08:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,646
            CDSs (total)                      :: 4,528
            Genes (coding)                    :: 4,299
            CDSs (with protein)               :: 4,299
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 229
            CDSs (without protein)            :: 229
            Pseudo Genes (ambiguous residues) :: 0 of 229
            Pseudo Genes (frameshifted)       :: 115 of 229
            Pseudo Genes (incomplete)         :: 112 of 229
            Pseudo Genes (internal stop)      :: 54 of 229
            Pseudo Genes (multiple problems)  :: 45 of 229
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP088144.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4634
                     /organism="Salmonella enterica subsp. enterica serovar
                     Gallinarum"
                     /mol_type="genomic DNA"
                     /strain="SCPM-O-B-4548"
                     /serovar="Gallinarum"
                     /sub_species="enterica"
                     /db_xref="taxon:594"
                     /plasmid="pB-4548_2"
     gene            complement(501..692)
                     /locus_tag="LRM93_RS23145"
                     /old_locus_tag="LRM93_23145"
     CDS             complement(501..692)
                     /locus_tag="LRM93_RS23145"
                     /old_locus_tag="LRM93_23145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165986.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            755..1078
                     /locus_tag="LRM93_RS23150"
                     /old_locus_tag="LRM93_23150"
     CDS             755..1078
                     /locus_tag="LRM93_RS23150"
                     /old_locus_tag="LRM93_23150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1287..>1724
                     /locus_tag="LRM93_RS23155"
                     /old_locus_tag="LRM93_23155"
                     /pseudo=""
     CDS             1287..>1724
                     /locus_tag="LRM93_RS23155"
                     /old_locus_tag="LRM93_23155"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1756..2316
                     /locus_tag="LRM93_RS23160"
                     /old_locus_tag="LRM93_23160"
     CDS             1756..2316
                     /locus_tag="LRM93_RS23160"
                     /old_locus_tag="LRM93_23160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            2323..2556
                     /locus_tag="LRM93_RS23165"
                     /old_locus_tag="LRM93_23165"
     CDS             2323..2556
                     /locus_tag="LRM93_RS23165"
                     /old_locus_tag="LRM93_23165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3285..4124)
                     /locus_tag="LRM93_RS23170"
                     /old_locus_tag="LRM93_23170"
     CDS             complement(3285..4124)
                     /locus_tag="LRM93_RS23170"
                     /old_locus_tag="LRM93_23170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(4316..4465)
                     /locus_tag="LRM93_RS23330"
     CDS             complement(4316..4465)
                     /locus_tag="LRM93_RS23330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     Typing          329..413
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          complement(2..309)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="90.415"
                     /coverage="100.0"
                     /evalue="3.1700000000000015e-110"
     Typing          4124..4575
                     /name="ColRNAI_rep_cluster_1857"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          1069..2654
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.811"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ctttatagtc ctgtcgggtt tcgccacctc tgacttgagc gtctgttttt gtgatgctcg
       61 tcaggggggc ggagcctatg gaaaaacgcc agcggcgcgg ccttcttcct gttcctggtc
      121 ttttgctcac atgtttcttt tggcgttatc ccctgattct gtggataacc gcatcaccgt
      181 ctttgagtga gctgataccg ctcgccgcag ccgaacgacc gagcgtagcg agtcagtgag
      241 cgaggaagcg gaagagcgcc tgatgcggca ttttctcctt acgcatatgt gcggtatttc
      301 acaccgcata tggtgcactt ttcttataat ccgcactgat gccacatagt taagccagta
      361 tacactccgc tatcgctacg tgactgggtc agggctgcgc cccgacaccc gctaaaaccc
      421 gctgacgcgc cctgacgggc ttgtctgctc ccggcatccg ctcacaggca agctgtgaac
      481 gtctccggga gctgcatgtt tcagttgctt tcaccgtcat cgccgaagcg tgcgaggcaa
      541 ctacggtaga gttcgtcggc gtggtcgtga agtgattcgc agatgtctgc ctgttcgtcc
      601 gcgtccagct cgttgagttt ttccagcagg gtcagcgtct ggcttctgat aaagcgggcc
      661 atgttaaggg ctgttttttc ctgtttggtc atggtcttaa ggctccttaa taggggattt
      721 tttaggggga atgataccga tgaaacgcga gaagatgctc acgatacggg ttagcgatga
      781 ggagcacgcc cggttactgg aacgctgcga gggtaaacga ctggcagaat ggatgcggcg
      841 ggtctgtctg ggggagccgg ttgcgcgcac aggaaaactg ccgacactat cgccgccatt
      901 gctgcggcat ctggctgcca tcgggaacaa tctgaaccag acagcccgga aggtgaacag
      961 cggccactgg tcttcgattg accgggttca tgtggtggcc gcactgatgg ccatcgaggg
     1021 tgaattgcgc cagttgcggc aggctgtcag ggaacagggg ggacgggatg atagttaaat
     1081 ttcatgccag ggggaaaggc ggtggaagtg gcccggtcga ttacctgctg gggcgggagc
     1141 gtaaccgcga aggcgcaacg gtgctccggg gtaacccgga agaaatccgg gaactcattg
     1201 atgccacgcc attttcgaag aaatacacgt caggcgttct gtcgttcgcg gagaaggagt
     1261 taccgccggg tgaacgcgaa agagtgatga cgagctttga gcgtgttctt atgcccggtc
     1321 tcgaaaaaga ccagtacagc attctctggg tggaacacca ggataagggg cggctcgaac
     1381 tgaattttgt cattccgaac atggaactac agagcggtaa gcgcctccag ccgtactacg
     1441 accgtgcgga caggccgagg ataaatgcct ggcagacgct ggttaatcat cattacgggc
     1501 tgcgtgaccc gaacgcaccg gagaacagac ggacgcttgt cacaccgaat aatctgccaa
     1561 aagcgaaaca ggaggccgca gaagcgatta cacggggtct tgaggcgctt taccgtgccg
     1621 gagcaataaa aacgcgtcag gatgtcactg aggcgctcac agcggcaggt tttgaggtgg
     1681 tgaggacaac cagaagcagt atcagtattg ccgacccgga gggggggcgg aatctcaggc
     1741 taaagggggc gctgtatgag caatctttta caaatgggaa cagacttcga gaagaaactg
     1801 aaagagcgag ccgcttctac cgagaacatg ctgaacagcg agttcaggaa gctagaagag
     1861 tctgtagaca aggcactgag cttaaacagg cagaaaatca gagacgctat cagcgaacat
     1921 acaacatccg tgaaacagca actggatacg ctgagcacca ccgtgagcac gcagctcagc
     1981 accacagagg ccgaactgtc ccggcagcag aaaaacctgc tctggcaggt gatcaaaggg
     2041 cgggtactgt ttccggcgct gaccgcgctc agcgtcacgg gcggcatttt cctggggtgc
     2101 tgggggctga ttcagtggca ggaaagcagg attgcgaaaa atatcttgac catcagagag
     2161 caggaaaaca cgctggcgaa actcgaggca aaaacctggg gggtgacgtt cgtcaatggc
     2221 gagaacggga aatttctggt gctgccggac ggggtgaaag gggaaaacac ctggacggtg
     2281 ggcgacaaga acgccgtgag gctggtcagg gagtaaacga gtatgacgga actggaaggg
     2341 catttgctga acgccttaga gcatttgcaa caggactata tgcggcggct gaacgagtgg
     2401 gagagcgcct tcgcagaatt gcagaagatg cacgcggtta cgcaacagaa caacgcgata
     2461 ctgaacgagc gtgtcgtgaa cttgagtcag caggtgcagc tattagccgg acaagtcgac
     2521 cgcttgagtc ggttatttat cacgaacaac agataaggga tgaacaggag cgtcaggcgc
     2581 aggagcttgc ccggcgctgg catgaagagc aggaacccga agcgcggatc tggcgtggcc
     2641 cgtcaatggg gatgtgaccg gggtgccccc tgaaatcgag ccagtttgtg gcacgcccta
     2701 cccggatggc gccaatgtta atgtacgtac attagcatta acaatatcca aacctcccca
     2761 ttttgccccg ttcgacggct ggaacgtgcg aaactgatcg tcattcagtt tcgcgcataa
     2821 ctatgcatga ggttaaaatt taccaggcgc gatcgcggca gtttttcggg tggtttgttg
     2881 ctgtttttac ctgtctgctg ccgtgatcgc gctgaacgcg tttaagcggt acgcgcaatg
     2941 cgacgttatg gtaaatacgg agtattttaa ttgcgggaat taaaacaaca aaggcccgct
     3001 gtactctata cagcgggcct ttgttgtata tctctgtcgt ttgtccccgg gggggaagca
     3061 ttactgctaa caagtcccgt gagaaaactg cgcaatcgta ttgcgcacca tgaacctatt
     3121 ctcaaccgca atctggagga tgattttgct acgataaaga gaattatcgc gtatcggtgt
     3181 cagcattcat tggagtggat gctgaaaaac caggtgttac tccctctact tacacttaaa
     3241 cctctctaaa aatataagta agtactatcg agggctatca tgaactatgg tgccctctga
     3301 gcatagctac ccattacttc ttctatgtca ttgaataatt catttcttaa ctctaagtat
     3361 tctagtaact ccatttctaa tgactctgtc gtgaacttaa atctagaagg atctttgatt
     3421 gagtttacta gtcttgataa cgctctatat gttttgagtg aaggttgcat tatagatgga
     3481 aagtatttga aaacctcttc atctctgttg aaattaacta aaaacttgta gtcatcattt
     3541 ataaatctca agcatacagc gtcaagctta tcgccttttc ttattattat ttctttatag
     3601 gaaagatatt tttcagaaga taagtcccac atcaagcgaa aatctctctt tgcgaacgag
     3661 ttcgcgtcat cattgaaaag agatgatgtg atggctttgg atagaccttc tgtgtttatc
     3721 tctttgttgg atgggtagta aattttatta attgctttca ttctctcaaa tgatgaatat
     3781 aggtcattat gccaccttgt tgaaatcacc cctttagtta tattctcctt gctaaaatta
     3841 agccctgtat caaaaataaa tgcagccatc agtgaatatg atatgttttt tattaactca
     3901 gacttaaatg gttccgctat ggagtagtac agtgataaaa taactaaaaa taaaaggtat
     3961 tgtcttacct ttcccgatga gtatatgtaa aggcgatatt tatttattga tagttttatt
     4021 ttgtatggaa tgatctcatt tctgtcatat cctcttcgtg gtggagcaaa acaaaagaaa
     4081 catgcagcta ttaataaaac aaaaaagatg aacagtgtaa gcaagttcgg ctcctgtgta
     4141 tgctcactat gcatgattgt cttgagatct aacgatcctg aaggtagtct tgtccgtaaa
     4201 cgaaaaaacc gcccagcaag gcggcttttc gaaggttctc agagcagcaa ctctttgaac
     4261 caaggtaact ggcttggagg agcacagcca ccaaatctgt cctttcagtt tagccttaac
     4321 cggcgcataa cttcaagact aactcctcta aacggttacc aatggctgct gccagtggcg
     4381 tttttacgtg tctttccggg ttggactcaa gacgatagtt accggataag gcgcagcggt
     4441 cgggctgaac ggggggttcg tgcacacagc ccagcttgga gcgaacgacc tacaccgggc
     4501 cgagatacca acagcgtgag ctatgagaaa gcgccacgct tcccgaaggg agaaaggcgg
     4561 acaggtatcc ggtaagcggc agggtcggaa caggagagcg cacgagggag cttccagggg
     4621 gaaacgcctg gtat
//
