LOCUS       NZ_CP087709             4052 bp    DNA     circular CON 01-FEB-2024
DEFINITION  Klebsiella pneumoniae strain YZH2487 plasmid pYUYZH2487-3, complete
            sequence.
ACCESSION   NZ_CP087709
VERSION     NZ_CP087709.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23249428
            Assembly: GCF_020991145.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Whole genome of Klebsiella pneumoniae YZH2487
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4052)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-NOV-2021) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/01/2024 04:10:48
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,664
            CDSs (total)                      :: 5,539
            Genes (coding)                    :: 5,374
            CDSs (with protein)               :: 5,374
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 165
            CDSs (without protein)            :: 165
            Pseudo Genes (ambiguous residues) :: 0 of 165
            Pseudo Genes (frameshifted)       :: 64 of 165
            Pseudo Genes (incomplete)         :: 107 of 165
            Pseudo Genes (internal stop)      :: 24 of 165
            Pseudo Genes (multiple problems)  :: 27 of 165
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP087709.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="YZH2487"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="pYUYZH2487-3"
                     /geo_loc_name="China: Yangzhou"
                     /lat_lon="32.15 N 119.01 E"
                     /collection_date="2020-10-24"
                     /collected_by="Li Guiling"
     gene            complement(340..798)
                     /locus_tag="LO768_RS28215"
                     /old_locus_tag="LO768_28220"
     CDS             complement(340..798)
                     /locus_tag="LO768_RS28215"
                     /old_locus_tag="LO768_28220"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            2164..2505
                     /locus_tag="LO768_RS28220"
                     /old_locus_tag="LO768_28225"
     CDS             2164..2505
                     /locus_tag="LO768_RS28220"
                     /old_locus_tag="LO768_28225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_085859042.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2714..>3145
                     /locus_tag="LO768_RS28225"
                     /old_locus_tag="LO768_28230"
                     /pseudo=""
     CDS             2714..>3145
                     /locus_tag="LO768_RS28225"
                     /old_locus_tag="LO768_28230"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3183..3668
                     /locus_tag="LO768_RS28230"
                     /old_locus_tag="LO768_28235"
     CDS             3183..3668
                     /locus_tag="LO768_RS28230"
                     /old_locus_tag="LO768_28235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_055314654.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            3672..3884
                     /locus_tag="LO768_RS28235"
                     /old_locus_tag="LO768_28240"
     CDS             3672..3884
                     /locus_tag="LO768_RS28235"
                     /old_locus_tag="LO768_28240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          1898..2077
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          complement(1435..1915)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.501"
                     /coverage="92.0"
                     /evalue="5.96e-162"
     Typing          2496..4000
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.223"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gctaaatacg gtcgtgatga aaacatcacg gcgtatacaa cggagggatt atgagactgt
       61 ttaacgtgat tgagacggtg ctgaactgcc tgtacatggc gctggagatc tgggactggc
      121 tggagaagca ttttcctgtt tttaaggcgt tcatccagat tctggcctga aatcagaccg
      181 tatgcatctg gctgcatgac catgcagccg ggtaaaattt atctgtcacg aacggggcgg
      241 tgtatcgggt ggtttgttgc cggttttacc tgactgccgc cccgtttgtg acgaacatgt
      301 ccggagcggt gcgggcaaga gatgttatgg taaatcatat tagttctgaa tgattcgggc
      361 tccaccagtc attactattt gagcaccacc tgacattttt atacttgtac cctggctagt
      421 cattgtcgta tcaccttgta tgatcgtttt tccagtagca tgttgacctc caccagtgac
      481 taaaattgac gcttgtactt gagatccatt tatcaaaaca gttccggctt ggtgatcaaa
      541 ttttattccg ctcaatgctt ttaattcagc tccatctagc tgaatttcac cattggctgc
      601 tgcagcctga atggccccct gcatctgaga aaataattta tcaacttcgt caaaaggtaa
      661 tggtgtttca agcagtgagg cttgttgttc aacttcagga tgtttacttg ctaacttccc
      721 tatgatgcct ttgattgcat cagaagtaag attgcttaat gcgccagtga gaacggcaag
      781 tagtgtggtt tcaatcatta tatttccctc gttagattgc tgtgatgcgt attatttact
      841 ctttataatc tccgattctg tccatatggt tagttgcact attacgttta taagtgccac
      901 ttttaccata tatatatcca acgctacatt gtggacattt tggcgtctcg tcattatgag
      961 tgaaatttat ttctcctccg acagataggg tttttacgtt ttccggataa tctaatgtag
     1021 ccacgccggt ccattcacaa ttcgagcaga caacatcgaa agatgttggg atactcttgc
     1081 agttgatgtt gatttgcata tgcataacct cgattttgca cagaaattac agtgttatta
     1141 gttgcatacc gactataacc tgagtttgtg atggagtggt gtttttttgc tttgacttga
     1201 gtaagagaaa gagatgatct tcttgagata atctctttct gagcgtagtc ttttgctctg
     1261 taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt tagttaatcc tggcagattt
     1321 actaaccgtg gtaacagtct tgtgcgagac atgtcaccaa agctgtcctt ccagtgtagc
     1381 cgcagtaagg ccaccacttc aagaactctg aatacatctc tcgcacatcc tgtttaccag
     1441 tggctactgc caatggcgat ttgtcgtgcc ttttcgggtt ggactcaaga cgatagttac
     1501 cgaaaagagc gtggtagtcg gactgaacgg ggggatcgtg catacagtcc agcttggagc
     1561 gaactgccta cccggaactg agtgtcaggc gtggaatgag acaaacgcgg ccataacagc
     1621 ggaatgacac cggtaaaccg aatggcagga acaggagagc gcacgaggga gctaccaggg
     1681 ggaaacgcct gggatcttta tagtcctgtc gggtttcgcc accactgatt tgagcgtcag
     1741 attttatgat actcgtcagg ggggcggagc ctatggaaaa acggcaacgc cgcatcctct
     1801 tcccggcttc tcctgatttg agcgctgctt gcgtatcccg tcatctgtga gctggtaacg
     1861 cccgccgcag tctcacggca ggagcgcagc gactgagtga gcgaggaggc gtcatttcac
     1921 ctttaccagc atgttgcact tacgcccgtc agccacattt tccccttccc acatgaagca
     1981 ctttcataca ttaccactcc gccgtaacat atttagccag tatacactcc gctagcgcta
     2041 cgtgactggt tcagggctgc gccccgaaac ccgctaaaag ccactgacgc gcctgcggct
     2101 tgtccaacac cgtgccgacc gggaaacatt tcccgcccgt cccggtgtta tcaggaggct
     2161 actctggcag acaaacgcaa caagatgctc acgatgtggg tgacggaaga cgaacaccgg
     2221 cggctgctcg agcggtgcga cggcaggcag ctggcggcgt ggatgcgtca gacctgcctc
     2281 gatgagaagc cggcgcgtgc ctgcagactg ccgtcaatat cgccggcgct gctgcgccag
     2341 cttgccggta tgggtaacaa cctgaaccag atcgcccgga aagtgaatgc cgttggtgcc
     2401 ggtcatgatc gggtgcagat tgtggccgcc ctgatggcaa tagacgcggg actggagcgg
     2461 ctgcggcatg cggtgctgga aaaagggggg gatgatgatc gttaaatttc atccccgggg
     2521 gcgcggtggt ggtgccggtc cggtggatta cctgctggga aaagaccggc agcgcgaggg
     2581 ggcgaccgtg ctgcagggaa aaccggagga agtccgggag cttatcgatg cctcgccgta
     2641 tgcgaaaaag tacacctccg gcgtgctgtc gttcgcggag gctgaactgc tgcccgggca
     2701 gcgggagcag atcatggcca gctttgagcg ggttctgatg cccgggctcg ataaagacca
     2761 gtacagcatt ctgtgggtgg agcacaccga caaggggcgg ctggagctga atttcctgat
     2821 ccccaacact gaactgctga ccgggaaacg cctgcagccg tattacgatc gcgccgaccg
     2881 gccgcgcatc gatgcctggc agaccgtggt gaacggcaga ctgggactgc atgatccaaa
     2941 cgccccggag aaccggcggt tactggttac gccgtccgca ctgccggaaa cgaagctgga
     3001 agccgctcag gcgattacac gtgggttgct ggccttagcc tcatccgggg agctcaaaac
     3061 tcgcgaggac gtcacaggtg cgctcacagc ggcaggtttt gaggtggtcc gcactacaaa
     3121 aaacagtatc agcattgccg acccggacgg ggggcgaaac atccgactga agggagccat
     3181 ttatgagcag tcttttagcg ctggcgaagg acttggagca gcaatcgaaa gcgcagcagc
     3241 agagtaccgg cgagatgctg aaagccgcat tcagcgagca cgagaaatct gtaaaagcgg
     3301 aactgagcgc aagcgcgaag agaatcagcg acgccatcag cgcccacgag cagggtatga
     3361 ccgcggcgat gcagtcgaac cgcctgagcg tgctgcgtat ggtcggccgg acgtggctga
     3421 ccatcaccct ggtctcggta ctgctgatcg ccatgagcgg gagcattctg tggtggcagg
     3481 ggcagcagat caccgggaat taccagacta tccgggcgca ggagcggacg caggccatgt
     3541 tgtcggagaa aaaccacggc gttcagctgt cgctctgcgg ggagaagaaa ctgtcctgcg
     3601 tcaaagtgaa cccgaaagcg ggagcttacg gggaggaagg gaactggatg gtactggaga
     3661 ggaaatagcc catgacggaa ctggaaaaac agttgctgac cgcattagag cagctacatc
     3721 aggactactc gcaaaggctg gacgagtggg agagcgcctt cgcggaatgg cagaagatgt
     3781 ctggtcttat gcaacgggag aacgcggcgc tgaacgagcg cgtcacgcgc ttgagtcagc
     3841 aggtggcgaa cttgagcagg cagttacagc gtttgagcca gtagtgcagc ggcatgaaat
     3901 ggcggtggcc gccgaacggg catacgagca gcgacagcac gaaaaagagc tggcggaagc
     3961 ccgttcccgt cagcggagct ataacggtcc gacgctgggc tgacaggctt caccagtgac
     4021 aaaccccacg aagaagggct cataaatttc cc
//
