LOCUS       NZ_CP087617             1283 bp    DNA     circular CON 08-JUN-2024
DEFINITION  Klebsiella pneumoniae subsp. pneumoniae strain DD02172 plasmid
            pDD02172-6, complete sequence.
ACCESSION   NZ_CP087617
VERSION     NZ_CP087617.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN22822728
            Assembly: GCF_023066625.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae subsp. pneumoniae
  ORGANISM  Klebsiella pneumoniae subsp. pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Jiang,J., Su,J., Xu,X. and Wang,M.
  TITLE     Insertion sequence medicated mrgB disruption is the major mechanism
            of polymyxin resistance in carbapenem-resistant Klebsiella
            pneumoniae isolates from China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Jiang,J., Su,J., Xu,X. and Wang,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-NOV-2021) Institute of Antibiotics, Institute of
            Antibiotics, No. 12 Wulumuqi Road, Shanghai, Shanghai 200000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 01-AUG-2021
            Assembly Method                   :: Unicycler v. v0.4.9
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200x
            Sequencing Technology :: Illumina+Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_023066625.1-RS_2024_06_08
            Annotation Date                   :: 06/08/2024 04:22:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,673
            CDSs (total)                      :: 5,549
            Genes (coding)                    :: 5,388
            CDSs (with protein)               :: 5,388
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 69 of 161
            Pseudo Genes (incomplete)         :: 96 of 161
            Pseudo Genes (internal stop)      :: 27 of 161
            Pseudo Genes (multiple problems)  :: 27 of 161
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP087617.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Klebsiella pneumoniae subsp. pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="DD02172"
                     /host="Homo sapiens"
                     /sub_species="pneumoniae"
                     /db_xref="taxon:72407"
                     /plasmid="pDD02172-6"
                     /geo_loc_name="China:Shanghai"
                     /lat_lon="39.87 N 116.28 E"
                     /collection_date="2017-12-01"
                     /collected_by="Jiachun Su"
     gene            join(1161..1283,1..747)
                     /locus_tag="LMH59_RS28320"
                     /old_locus_tag="LMH59_28320"
     CDS             join(1161..1283,1..747)
                     /locus_tag="LMH59_RS28320"
                     /old_locus_tag="LMH59_28320"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phasyl DNA replicon protein arp"
                     /protein_id="WP_180398993.1"
                     /translation="MLLNKDRFGKLTSKSLDSIAALGLREANAELPCLFRNNSTEISLK
                     TPPEPLSPLAFELSTNLKKSASALAWNVQYFVDTYGLSNVGFLTLTFRDHVTDPKEAQR
                     RFNSLKTHILAKRYRAYIRVMEPMKSGRIHYHLLVALHSDIRTGFDFPAVYRQDYSSAN
                     KAIRSEWSFWRKTAPKYGFGRTELMPVRSNSEGIGRYVGKYISKGIESRTEQFKGVRLV
                     EYSRKAKIASTRFQFVSDGSYEWRRKLSIFVHYIADNMGCEPSFDGLRRVLGSRWSYHW
                     RDFIMNIE"
                     /name="phasyl DNA replicon protein arp"
ORIGIN
        1 atttctttaa aaacacctcc agaaccctta tcacctctgg cttttgagct ttctacaaac
       61 ctcaaaaaat ctgcctcggc tctggcatgg aatgtacagt attttgtcga tacctacggc
      121 ctttcaaacg ttggtttttt aaccctgact tttcgtgacc atgtgaccga ccccaaagag
      181 gcgcagcgcc gttttaactc cctcaaaaca catatccttg ccaaaagata ccgcgcttac
      241 atccgtgtta tggagcctat gaagtcaggg cgcatccact atcacttact cgttgcactg
      301 cactccgaca ttcgtaccgg attcgatttc cccgctgtat atcgccagga ctactcctcc
      361 gcaaacaagg ctatccgctc cgagtggtca ttctggcgca agactgcgcc gaaatatggc
      421 ttcggtcgca ctgaattgat gcccgttcgg tcaaattctg aggggatagg gcgctatgta
      481 ggcaaataca tttctaaggg catagaatcg cgtacagagc aatttaaggg cgttaggctg
      541 gtagagtatt cccgcaaggc taaaatcgct tctacgcgct tccagttcgt ttctgacggg
      601 tcttatgagt ggcgtcgcaa actttctatc ttcgttcact acatcgcgga taacatgggt
      661 tgtgaaccat cattcgacgg cttacgccgt gtccttggct ctcgttggtc ttatcactgg
      721 cgtgatttca tcatgaacat cgaatagtcc acgctgttta atagtggact cttgttccaa
      781 tatggaacac tttccgcctc acgcagccag attgtaaatc tgtcagcgtt caccgttgct
      841 gaactcgtca aatgctaaat cgggggtccc tttagggttc cgatttagtg tttgtacgac
      901 accccgatta aagacacttc ttgctggtgt gtgttacgtg cgcagcaggt gacacacacc
      961 tgtaagacgg gttttaaggg gttccgacca ctgactaatc cgtaacacca tgagagaccc
     1021 ccgtttgacc acgttgccga atcgctgtaa cgttgccccg atggctaaaa agtaaaaccc
     1081 ccgatgcgca aacatcaggg gtctttagtc agtaagcatt tctagggctc attctgtact
     1141 ttacttaact ggacaactgg atgttactca acaaagaccg ctttggcaaa ctcacgtcaa
     1201 aatccctcga ttcgattgct gctctcggac tccgcgaggc gaatgccgag cttccttgtc
     1261 tatttagaaa caactcaacc gag
//
