LOCUS       NZ_CP087596             5870 bp    DNA     circular CON 23-JAN-2024
DEFINITION  Acinetobacter baumannii strain SHOU-Ab01 plasmid pAb01-2, complete
            sequence.
ACCESSION   NZ_CP087596
VERSION     NZ_CP087596.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23235066
            Assembly: GCF_020985285.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5870)
  AUTHORS   Yuan,L., Zhang,X., Wang,D., Lv,Y., Guo,Y., Wang,L., Liu,X. and
            Wang,H.
  TITLE     Characterization of a strain of Acinetobacter baumannii isolated
            from ascites of Andrias davidianus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5870)
  AUTHORS   Yuan,L., Zhang,X., Wang,D., Lv,Y., Guo,Y., Wang,L., Liu,X. and
            Wang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-NOV-2021) State Key Laboratory of Pathogen and
            Biosecurity, Beijing Institute of Biotechnology, 20 Dongdajie Street
            Fengtai District, Beijing 100071, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 17-NOV-2021
            Assembly Method                   :: Canu v. v.1.6
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 272.0x
            Sequencing Technology             :: PacBio RS; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/23/2024 02:03:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,753
            CDSs (total)                      :: 3,658
            Genes (coding)                    :: 3,567
            CDSs (with protein)               :: 3,567
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 50 of 91
            Pseudo Genes (incomplete)         :: 43 of 91
            Pseudo Genes (internal stop)      :: 16 of 91
            Pseudo Genes (multiple problems)  :: 14 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP087596.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5870
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="SHOU-Ab01"
                     /isolation_source="Andrias davidianus"
                     /db_xref="taxon:470"
                     /plasmid="pAb01-2"
                     /geo_loc_name="China: Shanghai"
                     /lat_lon="31.23 N 121.47 E"
                     /collection_date="2021-07-11"
                     /collected_by="Xiaoyan Zhang; Lu Yuan"
     gene            complement(25..294)
                     /locus_tag="LOZ89_RS18690"
                     /old_locus_tag="LOZ89_18690"
     CDS             complement(25..294)
                     /locus_tag="LOZ89_RS18690"
                     /old_locus_tag="LOZ89_18690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061781.1"
                     /translation="MTKAAETLEKKIEAQLEKLKQLKAQKQAIEARERTKKKEQERKDD
                     TRRKILLGSYLIKKMNANETNKEKILAELNEYLTEDRDRQLFNL"
                     /name="hypothetical protein"
     gene            675..1637
                     /gene="mobQ"
                     /locus_tag="LOZ89_RS18695"
                     /old_locus_tag="LOZ89_18695"
     CDS             675..1637
                     /gene="mobQ"
                     /locus_tag="LOZ89_RS18695"
                     /old_locus_tag="LOZ89_18695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004917616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_057061782.1"
                     /translation="MAIYHCSTKTVNRSSGRTAVASMAYRAGEKLKDERTGLTHDFTRK
                     NGVAHSEIISNLDIEIDRNDLWNLAEQSENRKDARTAREWVIALPDELDADQRKDLAKA
                     FARSLVDRYDVIADLAIHEPSKGGSDKNYHAHIMLTTRKAELDADNKLTLTTKTDIELS
                     NAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEG
                     TKVTQLRRQGIDTEISRYNDKVKQHNAQYLNQKEQQKETMLQRGFNRVEQGFDQWQKDR
                     EAKRLELERQAEQKRQQEREMKKAEQKASPNLNKGGWSR"
                     /name="mobQ"
     gene            1634..2107
                     /locus_tag="LOZ89_RS18700"
                     /old_locus_tag="LOZ89_18700"
     CDS             1634..2107
                     /locus_tag="LOZ89_RS18700"
                     /old_locus_tag="LOZ89_18700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004282271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061783.1"
                     /translation="MSNQNDDLDDQLYILLASMKEYREAIADDKKRLEQFYNQVAIGVL
                     DKAEKSLQDTNKQAIGALKSRILELDKATSRLNTQFIIVYASAFIGLVIILFLALFLFV
                     PSMDEIQQRRSEVNNLKQYSLDISKCEGQTCVKVMKKQCGYGKNGDYCVIDPK"
                     /name="hypothetical protein"
     gene            complement(2227..2994)
                     /locus_tag="LOZ89_RS18705"
                     /old_locus_tag="LOZ89_18705"
     CDS             complement(2227..2994)
                     /locus_tag="LOZ89_RS18705"
                     /old_locus_tag="LOZ89_18705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017397198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061777.1"
                     /translation="MKLVLAIILLVTSSLTFASKENAIRNAIIYDDFSVWLDDGKSLFN
                     WSKITNTILQEPVTPKKIRTDFEGNEVSAHRAYTNKWTRIQATVKNVKLDKEGRMYADL
                     TENYIGFKAYISNEDFASSLKPNQKIDMNCFNSTVDSTNNCISYPELVWRNALSKPYLP
                     MLMNSDFISFISFTISRSIPDDSFKIFCSKDIYSANCHNFLIKEIRKNGFFSKGFDKEL
                     KKKFEQVCGKNKDIKACEKFKDEIVKIEDLINK"
                     /name="hypothetical protein"
     gene            3086..3418
                     /locus_tag="LOZ89_RS18710"
                     /old_locus_tag="LOZ89_18710"
     CDS             3086..3418
                     /locus_tag="LOZ89_RS18710"
                     /old_locus_tag="LOZ89_18710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005642272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061778.1"
                     /translation="MALINCRECNHTVSDKALDCPSCGAKLRKPTRGFFGKIFKWLFIL
                     FNLFMLVMTFKSCGTASEVIISSQNEYEQAGATLGTTLGLGMIITFWALVDVILGLFVL
                     FTRPKN"
                     /name="hypothetical protein"
     gene            complement(3537..3929)
                     /locus_tag="LOZ89_RS18715"
                     /old_locus_tag="LOZ89_18715"
     CDS             complement(3537..3929)
                     /locus_tag="LOZ89_RS18715"
                     /old_locus_tag="LOZ89_18715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_053502710.1"
                     /translation="MSYTWEFGKKFAVEFGRYPENQQDKILDFTDVYEEFGLRDFSKYQ
                     GKISPSWRGIDKTDPIYNYSYSNNLWHYHIGIPDYVKSKYNNYLTSDMILHFQRKQQID
                     HIRLVDITWHYKANGMFWLPSPEYLE"
                     /name="hypothetical protein"
     gene            complement(3930..4100)
                     /locus_tag="LOZ89_RS18720"
                     /old_locus_tag="LOZ89_18720"
     CDS             complement(3930..4100)
                     /locus_tag="LOZ89_RS18720"
                     /old_locus_tag="LOZ89_18720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017284728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_019767309.1"
                     /translation="MNVMGFVITQASNQKTVPVRINLDRMKSALASETFVMPQGLSREE
                     KRRLILEAGKK"
                     /name="hypothetical protein"
     gene            4405..5334
                     /gene="repM"
                     /locus_tag="LOZ89_RS18725"
                     /old_locus_tag="LOZ89_18725"
     CDS             4405..5334
                     /gene="repM"
                     /locus_tag="LOZ89_RS18725"
                     /old_locus_tag="LOZ89_18725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767308.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_057061779.1"
                     /translation="MDLVVKDNNLINASYSLGLVEQRLVLLAIIEARESSKGIDSETFL
                     EIHAQHYADRFDVNVKNTYAMLSEAAQTLFNRQVTYMMLDEKRNKPEKRVIRWVSGISY
                     VEGAGVLKLRFSPEIVPLITRLEQNFTSYELEQVKSLNVYATRLYELLVCWRSTGKTPI
                     IEIEDFRSKIGVLPTEYKLMSDFKKRVFEPAIQQINENTDLTVKYDQHKSGRTITGFSF
                     KFKQKKTKSEKVVIAKRDPNTPDFFVKMTDSQRHLFATKLSEMPEMGKYSHGTESYQQF
                     AIRIADMLLEPEKFRELYPILEKAGFKS"
                     /name="repM"
     gene            complement(5324..5863)
                     /locus_tag="LOZ89_RS18730"
                     /old_locus_tag="LOZ89_18730"
     CDS             complement(5324..5863)
                     /locus_tag="LOZ89_RS18730"
                     /old_locus_tag="LOZ89_18730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019767307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057061780.1"
                     /translation="MEYCITTNFDLLETVRIFSPWLLAFVVYLVWHWQKEKEVIANETK
                     DILQIIDGLKASYTTLYIHHHLYLNSNNHFNEENFQKSKDEHYKIEKEFTAKITFLLTL
                     ITDAEIYKIYKNFELNEAKFSSTQLLFEGIQDEVDFFKTLSERINEDLDQLKIKLVGYA
                     MYKNKIKSRNRKCFNF"
                     /name="hypothetical protein"
     Typing          676..1631
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="86.957"
                     /coverage="99.0"
                     /evalue="1.74e-177"
ORIGIN
        1 cctaaagata cgatgtataa gaaattaaag attaaaaagt tgtctatctc gatcttctgt
       61 taaatactcg ttgagttcag cgagtatttt ttctttattg gtttcattgg cattcatttt
      121 tttaattaaa taagagccaa gcaaaatttt acgtctagta tcatccttgc gctcctgttc
      181 ttttttcttg gtacgttctc ttgcttcaat agcctgtttc tgagctttta actgtttcag
      241 cttctctaac tgggcttcaa ttttcttttc aagagtttca gcagcttttg tcatgattca
      301 gatttcggga tatagaaaac cactcaagca taaggcccta tgaattgaaa ttcaagcggg
      361 ctatatgcta tcgtgttttt catgaaatgc gcacttacga cttggatttc atccaagtca
      421 aagtttgcgt aaggggaatc cccttaaccc caaaaaattg ctacgcaatt ttaaaaagca
      481 aaaggaaaat aaaaatgtat cgttataatt ttagagaagc gcacctttat ctttgtccaa
      541 attgcggaca cgaatgcact tataaaatgc ctgaactgat ggcacaacat gcagaagaaa
      601 gagaagttca gaacctaaaa agagaatgcg aaaaatgcgg ttattacgtc cctgctagtc
      661 ggaagtgtta atcgatggcg atttatcatt gctcgaccaa aaccgtaaac cgcagttcgg
      721 gcagaaccgc agttgcatct atggcttatc gtgcagggga aaagctcaag gatgaacgga
      781 caggattgac ccacgacttt acgagaaaga atggtgttgc tcattctgaa attatctcga
      841 atctcgatat tgaaattgac cgtaacgacc tttggaactt ggcagaacag tccgaaaacc
      901 gcaaagatgc ccgaaccgct agagaatggg taatcgccct acccgatgaa ttagacgctg
      961 atcaacgtaa ggacttggca aaagcctttg ccaggtcctt agttgatcgc tatgacgtaa
     1021 tcgcagattt agccatccat gaaccgagta aaggcggtag tgataaaaac tatcacgccc
     1081 atatcatgct cacaacccga aaagccgaat tggatgcaga caataaactc actctgacca
     1141 ccaaaaccga tattgaactc agcaacgcca aacgaaaaag ccttggtatg gggacaaccc
     1201 aagacgaaat taaacagatt cgggaaacgt gggcaaattt agccaatcac gcattagaac
     1261 gtgcaggcta ccgagaaaaa atagaccacc gcagctatgc cgatcagaac aacggactac
     1321 aagccaccat ccatgaaggc accaaagtca cccaattacg cagacaaggc atagacactg
     1381 aaatcagccg ttataacgac aaagttaaac agcacaacgc ccaatacttg aaccaaaaag
     1441 aacagcagaa agaaaccatg ctccaacgtg gttttaaccg tgtagaacaa ggctttgacc
     1501 aatggcagaa agaccgagaa gccaaacgct tagaactaga acgccaagcg gaacagaagc
     1561 gacagcaaga acgagaaatg aaaaaagccg aacaaaaggc atcacctaat ttgaataaag
     1621 gcggatggtc aagatgagca accaaaacga tgatttagac gaccagttat atattttatt
     1681 ggcatccatg aaggaatatc gagaagccat agcagacgat aagaagcgat tagagcagtt
     1741 ttacaaccaa gtcgctatag gtgtgctcga taaggctgaa aaatcgctac aggacaccaa
     1801 taaacaagct ataggtgcat taaagagccg tattctggaa ctagacaaag caacaagccg
     1861 tctgaatacc caatttatca ttgtgtacgc cagcgccttt attgggctgg tcattattct
     1921 atttttggcg ttattcctat tcgtcccaag catggacgaa attcaacagc gtagatcgga
     1981 agtaaacaac ctcaagcaat acagcctaga catatccaaa tgtgagggac aaacctgcgt
     2041 caaggtcatg aaaaaacagt gtggatatgg gaaaaatggc gattactgtg tgattgaccc
     2101 taaataattt cgggcggtac tttgctctgt tcttttagta atgactaaat aatttttttc
     2161 agtcgcaaag tggctcgact ttgaaatatg gctttagcca tatttcaaag tatcgagctt
     2221 tgtaatttat ttgtttatca aatcttctat ttttactatc tcatctttga atttttcaca
     2281 agctttaata tctttatttt ttccgcaaac ttgttcaaac ttctttttaa gttctttatc
     2341 aaaacccttt gaaaaaaatc cattttttct tatttccttt attaagaaat tatgacaatt
     2401 agctgaatat atatcttttg aacaaaagat tttaaaacta tcgtctggaa tgcttcttga
     2461 aatagtgaat gatataaacg agataaagtc gctattcatt aacattggca aataaggttt
     2521 tgatagtgca ttacgccata ctagttcagg ataactaata cagttatttg ttgaatctac
     2581 tgttgagtta aagcaattca tatctatttt ttgattaggt ttaagactgg aagcaaagtc
     2641 ctcgttagag atatatgctt taaaacctat gtagttttct gtcagatctg catacattcg
     2701 accctcttta tctaatttca cattttttac agtagcctgt atacgagtcc atttattcgt
     2761 atatgcccta tgggctgata cttcatttcc ctcaaaatca gttctaattt tttttggagt
     2821 tacaggctct tgaaggatcg tattagttat ttttgaccag ttaaacaatg actttccatc
     2881 atctagccat acagaaaaat catcataaat tattgcattt cttattgcgt tttctttact
     2941 agcgaaagta agtgatgatg ttactaacaa aattatagcc agaactaatt tcatgtaatt
     3001 aatctttaaa tatttacttt aagatagagt tttataaaac aatgatttga ttaaaagcaa
     3061 atatctaact agaggagaat tttttatggc attaattaac tgtcgagaat gcaatcatac
     3121 agtgagtgac aaggctttag attgtccatc ttgtggcgcg aaattaagaa aacctactag
     3181 aggcttcttc ggtaaaattt ttaagtggct atttattctt tttaatctgt ttatgcttgt
     3241 tatgaccttc aaatcatgtg gaacagcatc tgaagttatt atatctagtc aaaatgaata
     3301 cgaacaagct ggggctacgt tgggcacaac tcttggttta ggaatgatta taactttttg
     3361 ggcattagtt gatgtgatac taggtctgtt tgtcttattt actagaccta aaaattaaaa
     3421 aacagagcga gtgtctacga gcgatcacct ggcatcaaaa ttgatgtgtt tttctctctg
     3481 attacaatta atcccttttg tttaataaag agattaacag agcaaagcga ctgtacttat
     3541 tctaaatatt caggacttgg taaccagaac attccattgg ctttatagtg ccaagtaata
     3601 tctaccaagc gaatatgatc tatttgctgc tttctctgga aatgaagaat catgtccgaa
     3661 gttaaatagt tgttatattt acttttaaca tagtctggaa taccaatatg gtaatgccaa
     3721 agattatttg aatatgagta attataaatt ggatcagttt tatctattcc acgccatgat
     3781 ggggagattt taccttggta tttggaaaag tcccttaaac caaactcttc atagacatca
     3841 gtgaaatcta gaattttatc ttgttggttt tcaggataac gaccaaattc aactgcaaat
     3901 ttttttccaa attcccaagt gtatgacaat tattttttcc ctgcttccaa tattaatctt
     3961 cttttctctt ctctgcttaa accttgaggc ataacaaagg tttctgaagc aagagctgat
     4021 ttcattctat caagattaat acgaacaggt actgtttttt gatttgatgc ttgggtaata
     4081 acaaagccca ttacattcat ttgccacctc gacaaataaa gatctctgtt aaaattttaa
     4141 caaaaaaaat agcgtagcgg gtttttaatt gtttttaaat acttttaatt gtttttagac
     4201 acgctgaaac ccgctatacc aaaggatttc agacgctata aaaagacatt taccctgcta
     4261 taaaaagaca tttaccctgc tataaaaaga catttaccct gctataaaaa gacatttacc
     4321 ctgcttaaaa agacatttta caaaatgtct ttttaatggt agttttagat tgttttttat
     4381 aaaaaaaatt ggcgtcaaaa aaatatggat ttagtcgtta aagataataa tttgatcaat
     4441 gctagttact ctctgggtct agttgagcaa cgtcttgtat tgttagctat cattgaagct
     4501 agagaatcta gtaaggggat agattcagag acatttttag aaatacatgc tcaacactat
     4561 gcagatagat ttgatgtaaa tgtaaaaaat acgtatgcca tgctttcaga agcggctcaa
     4621 actcttttta atcgtcaagt cacttacatg atgcttgatg aaaaaagaaa taaacctgaa
     4681 aagcgtgtaa ttcggtgggt tagtggtatt tcatatgtag aaggtgcagg agttcttaaa
     4741 cttcgctttt ctccagaaat tgtccctcta ataactagac tagagcaaaa ttttacgagt
     4801 tatgagctag aacaagttaa aagcttaaac gtgtatgcaa ctcgactata tgaattatta
     4861 gtttgttggc gtagtacagg taaaaccccc attattgaaa tagaagattt ccgttcaaaa
     4921 ataggggttt tacctactga atataaatta atgagtgatt tcaaaaagcg agttttcgag
     4981 ccagcaatac agcaaattaa tgaaaacaca gatctgacgg ttaaatatga tcaacataaa
     5041 tcaggccgta caattacagg attctcattt aaatttaagc aaaagaaaac gaaatcagaa
     5101 aaggtcgtaa tcgctaaacg agatccaaat acacctgact tttttgtaaa aatgaccgat
     5161 tctcaacgtc atttattcgc tactaaactt tctgaaatgc ctgaaatggg taaatattct
     5221 catggtactg aaagctacca gcagtttgcc attcgtattg ctgacatgct tttagaacct
     5281 gaaaaattta gagagcttta tccaatccta gaaaaagcag gatttaaaag ttaaaacact
     5341 ttctattccg gctttttatt ttatttttat acatcgcata acccactaac ttaattttaa
     5401 gttggtctaa atcttcattt attctttcac taagtgtttt aaaaaaatcc acttcatctt
     5461 ggataccttc aaataataac tgagtgctag aaaatttagc ttcatttagt tcaaaatttt
     5521 tatatatttt atatatttcg gcatctgtaa taagtgttag taaaaaggta attttagcag
     5581 tgaactcttt ttcaatttta taatgttcat cctttgattt ttgaaaattt tcctcattga
     5641 agtgattatt actattgaga tataagtgat ggtggatata tagcgttgta taagatgctt
     5701 tcaatccgtc tattatttgt aatatatcct ttgtttcgtt tgctataact tctttttctt
     5761 tttgccaatg ccaaactaaa tagacaacaa aagccagtaa ccatggtgag aaaattctta
     5821 ccgtttctaa taaatcaaaa ttcgtagtta tgcaatattc cacacatcct
//
