LOCUS       NZ_CP087347             5402 bp    DNA     linear   CON 12-SEP-2023
DEFINITION  Acinetobacter baumannii strain DB007 plasmid p3DB007.
ACCESSION   NZ_CP087347
VERSION     NZ_CP087347.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN23078449
            Assembly: GCF_024749665.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 5402)
  AUTHORS   Mellmann,A.
  TITLE     Sequencing of Acinetobacter baumannii genomes to construct genome
            database for SNP detection
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5402)
  AUTHORS   Mellmann,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-NOV-2021) Inst. Hygiene, University Hospital Muenster,
            Robert-Koch-Str. 41, Muenster 48149, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 147x
            Sequencing Technology             :: PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/12/2023 05:22:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,128
            CDSs (total)                      :: 4,030
            Genes (coding)                    :: 3,924
            CDSs (with protein)               :: 3,924
            Genes (RNA)                       :: 98
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 39 of 106
            Pseudo Genes (incomplete)         :: 61 of 106
            Pseudo Genes (internal stop)      :: 14 of 106
            Pseudo Genes (multiple problems)  :: 7 of 106
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP087347.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5402
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="DB007"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p3DB007"
                     /geo_loc_name="Germany"
     gene            complement(5..120)
                     /gene="rrf"
                     /locus_tag="LOZ99_RS20650"
     rRNA            complement(5..120)
                     /gene="rrf"
                     /locus_tag="LOZ99_RS20650"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
                     /name="rrf"
     gene            complement(224..3131)
                     /locus_tag="LOZ99_RS20655"
     rRNA            complement(224..3131)
                     /locus_tag="LOZ99_RS20655"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
                     /name="23S ribosomal RNA"
     gene            complement(3371..3446)
                     /locus_tag="LOZ99_RS20660"
     tRNA            complement(3371..3446)
                     /locus_tag="LOZ99_RS20660"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3410..3412),aa:Glu,seq:ttc)
                     /name="tRNA-Glu"
     gene            complement(3535..5076)
                     /locus_tag="LOZ99_RS20665"
     rRNA            complement(3535..5076)
                     /locus_tag="LOZ99_RS20665"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
                     /name="16S ribosomal RNA"
ORIGIN
        1 tgatgcctgg cagtgtccta ctctcgcatg gggagacccc acactaccat cggcgctacg
       61 gcgtttcact tctgagttcg gcatggggtc aggtgggacc accgcgctat tgccgccagg
      121 caaattctgt ttcattccaa ccgcttcact tcgtgtcgcc atcagaacca atctcggaac
      181 ttcgctgaaa atctcttcgt ctctaaaaca ccttcggtgt tgtaaggtta agcctcacgg
      241 atcattagta ctggttagct caatgcatcg ctgcacttac acacccagcc tatcaacgtc
      301 ttagtcttaa acgttccttc agtggactca aagtccaagg gaagactcat cttgaggcaa
      361 gtttcgcgct tagatgcttt cagcgcttat cttttccgca cttagctacc gggcaatgcc
      421 attggcatga caacccgaac accagtggtg cgttcactcc ggtcctctcg tactaggagc
      481 aacccctctc aatcttccaa cgcccacggc agatagggac cgaactgtct cacgacgttc
      541 taaacccagc tcgcgtacca ctttaaatgg cgaacagcca tacccttggg acctacttca
      601 gccccaggat gtgatgagcc gacatcgagg tgccaaacac cgccgtcgat atgaactctt
      661 gggcggtatc agcctgttat ccccggagta ccttttatcc gttgagcgat ggcccttcca
      721 ttcagaacca ccggatcact aagacctact ttcgtacctg ctcgagccgt cactctcgca
      781 gtcaagctag cttatgcctt tgcactaacc tcacgatgtc cgaccgtgat tagctaacct
      841 tcgtgctcct ccgttactct ttgggaggag accgccccag tcaaactacc caccagacac
      901 tgtcctcacc ccggatcacg gggccgagtt agaacatcaa acattaaagg gtggtatttc
      961 aaggatggct ccacgcagac tggcgtccac gcttcaaagc ctcccaccta tcctacacat
     1021 caaggctcaa tgttcagtgt caagctatag taaaggttca cggggtcttt ccgtcttgcc
     1081 gcgggtacac tgcatcttca cagcgagttc aatttcactg agtctcgggt ggagacagcc
     1141 tggccatcat tacgccattc gtgcaggtcg gaacttaccc gacaaggaat ttcgctacct
     1201 taggaccgtt atagttacgg ccgccgttta ctggggcttc gatcaagagc ttcgccttgc
     1261 ggctgacccc atcaattaac cttccagcac cgggcaggcg tcacaccgta tacgtccact
     1321 ttcgtgtttg cacagtgctg tgtttttatt aaacagttgc agccagctgg tatcttcgac
     1381 tggcttcagc tccatccgca agggacttca cctacatgcc agcgtgcctt ctcccgaagt
     1441 tacggcacca ttttgcctag ttccttcacc cgagttctct caagcgcctt ggtattctct
     1501 acctgaccac ctgtgtcggt ttggggtacg atttaatgtt acctggagct tagaggattt
     1561 tcctggaagc agggcatcaa ctacttctgc accgtagtgc atcgtcatca cgcctcaggg
     1621 ttagtatgca accggattta ccaggtcaca ccccctacac gcttaaaccg ggacaaccgt
     1681 cgcccggcca gcctagcctt ctccgtcccc ccttcgcagt aacaccaagt acaggaatat
     1741 taacctgttt cccatcgact acgcttttca gcctcgcctt aggggtcgac tcaccctgcc
     1801 ccgattaacg ttggacagga acccttggtc ttccggcgag cgggcttttc acccgcttta
     1861 tcgttactta tgtcagcatt cgcacttctg atacctccag caaccctcac aggccacctt
     1921 caacggctta cagaacgctc ccctacccaa caacgcctaa gcgtcgctgc cgcagcttcg
     1981 gtgcatggtt tagccccgtt acatcttccg cgcaggccga ctcgaccagt gagctattac
     2041 gctttcttta aatgatggct gcttctaagc caacatcctg gctgtctgtg ccttcccaca
     2101 tcgtttccca cttaaccatg actttgggac cttagctggc ggtctgggtt gtttccctct
     2161 tcacgacgga cgttagcacc cgccgtgtgt ctcccgtgat aacattcttc ggtattcgga
     2221 gtttgcatcg gtttggtaag ccgggatggc cccctagccg aaacagtgct ctacccccga
     2281 agatgagttc acgaggcgct acctaaatag ctttcgggga gaaccagcta tctcccggtt
     2341 tgattggcct ttcaccccca gccacaagtc atccgctaat ttttcaacat tagtcggttc
     2401 ggtcctccag ttagtgttac ccaaccttca acctgcccat ggctagatca ccgggtttcg
     2461 ggtctatacc ttgcaactat tcgcccagtt aagactcggt ttccctacgg ctcccctata
     2521 cggttaacct tgctacaaaa tataagtcgc tgacccatta tacaaaaggt acgcagtcac
     2581 accacgaagg tgctcccact gcttgtacgt acacggtttc aggttctatt tcactcccct
     2641 cgccggggtt cttttcgcct ttccctcacg gtactggttc actatcggtc agtcaggagt
     2701 atttagcctt ggaggatggt ccccccatat tcagacagga tgtcacgtgt cccgccctac
     2761 tcatcgaact cacgacctgt gcattttagt gtacggggct atcacccttt gctgcgcgac
     2821 tttccagacg cttccactaa cacacaagcc gattcaggtt ctgggctcct ccccgttcgc
     2881 tcgccgctac tgggggaatc tcggttgatt tcttttcctc ggggtactta gatgtttcag
     2941 ttcccccggt tcgcctcatg ccactatgta ttcatgacat gatagtgtgt cgaaacacac
     3001 tgggtttccc cattcgggta tcgccggtta taacggttca tatcacctta ccgacgcttt
     3061 tcgcagatta gcacgccctt catcgcctct gactgcctag gcatccaccg tgtacgctta
     3121 gtcacttaac ctcacaaccc gaagatgttt ccatcgttca agttgcaaac atttgagaga
     3181 ctctatgaca ggttactctt cattccggta cttctacgga ggaatgaatt tcagccgtca
     3241 tgtttcaatt ttcagcttgt tccagattgt taaagagcaa tatcttaaac atgactcgaa
     3301 agtcatcttt aagatatggt gtatcgtcag atactgaaga ccgccgcttt caccgggtgg
     3361 gtcggaagct tggcgtcccc taggggattc gaacccctgt taccgccgtg aaagggcggt
     3421 gtcctaggcc tctagacgaa ggggacacga caccgtactt ttatgacgct tttgctcgtt
     3481 actttttcat cagacaatct gtgtgagcac gccactcgaa gcaatatctt taggtaagga
     3541 ggtgatccaa ccgcaggttc ccctacggtt accttgttac gacttcaccc cagtcatgaa
     3601 tcacaaagtg gtaagcgccc tcccgaaggt taagctacct acttcttttg caacccactc
     3661 ccatggtgtg acgggcggtg tgtacaaggc ccgggaacgt attcaccgta gcattctgat
     3721 ctacgattac tagcgattcc gacttcatgg agtcgagttg cagactccaa tccggactac
     3781 gacgtacttt atgaggtccg cttgctctcg cgaggtcgct tctctttgta tacgccattg
     3841 tagcacgtgt gtagccctac tcgtaagggc catgatgact tgacgtcatc cccaccttcc
     3901 tccagtttat cactggcagt ctcctttgag ttcccggccg aaccgctggc aacaaaggat
     3961 aagggttgcg ctcgttgcgg gacttaaccc aacatttcac aacacgagct gacgacagcc
     4021 atgcagcacc tgtctcagag ttcccgaagg caccaatcca tctctggaaa gttctctgga
     4081 tgtcaagagt aggtaaggtt cttcgcgttg catcgaatta aaccacatgc tccaccgctt
     4141 gtgcgggccc ccgtcaattc atttgagttt taaccttgcg gccgtactcc ccaggcggtc
     4201 gatttaacgc gttagctccg gaagccacgc ctcaagggca caacctccaa atcgacatcg
     4261 tttacagcgt ggactaccag ggtatctaat cctgtttgct ccccacgctt tcgcacctga
     4321 gcgtcagtct tcgtccaggg ggccgccttc gccaccggta ttcctccaga tctctacgca
     4381 tttcaccgct acacctggaa ttctaccccc ctctacgaga ctctagcttg ccagtttcaa
     4441 atgcagttcc caggttgagc ccggggattt cacatctgac ttaacaaacc gcctgcgtgc
     4501 gctttacgcc cagtaattcc gattaacgct tgcaccctcc gtattaccgc ggctgctggc
     4561 acggagttag ccggtgcttc ttctgcgagt aacgtcaatt gatgaacgta ttaagttcac
     4621 caccttcctc ctcgctgaaa gtgctttaca acccgaaggc cttcttcaca cacgcggcat
     4681 ggctgcatca ggcttgcgcc cattgtgcaa tattccccac tgctgcctcc cgtaggagtc
     4741 tggaccgtgt ctcagttcca gtgtggctgg tcatcctctc agaccagcta gggatcgtcg
     4801 cctaggtgag ccattacccc acctactagc taatcccatc tgggcacatc tgatggcaag
     4861 aggcccgaag gtccccctct ttggtcttgc gacgttatgc ggtattagct accgtttcca
     4921 gtagttatcc ccctccatca ggcagtttcc cagacattac tcacccgtcc gccgctcgtc
     4981 acccggggag caagctcccc tgtgctaccg ctcgacttgc atgtgttaag cctgccgcca
     5041 gcgttcaatc tgagccatga tcaaactctt caattaaaag cttgatgtgc ttccactcga
     5101 gaagcgatgc tcaaagattt actgcatgaa ttttacttca gttagtcact cttcaagact
     5161 tgatattttt ttgcatccga agatgctgga tatcgtcttg tggagtgccc acacagattg
     5221 gtctgataaa ttgtttaaag agcagtgccg agaaactcat cggcgcggtc tgcgtatatt
     5281 acgcttttag cccggagagt caagcgtttt atttcgctgt cttctcgctg acccggcggc
     5341 ttgtcagtcg ttgttcccgg tcagtggagg cgccattata gggagttctc gcaggccgca
     5401 ac
//
